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Characterization of MSC Growth, Differentiation, and EV Production in CNF Hydrogels Under Static and Dynamic Cultures in Hypoxic and Normoxic Conditions. 低氧和常氧条件下静态和动态培养 CNF 水凝胶中间叶干细胞的生长、分化和 EV 生成特征。
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-21 DOI: 10.3390/bioengineering11101050
Ilias Nikolits, Farhad Chariyev-Prinz, Dominik Egger, Falk Liebner, Nicolas Mytzka, Cornelia Kasper
{"title":"Characterization of MSC Growth, Differentiation, and EV Production in CNF Hydrogels Under Static and Dynamic Cultures in Hypoxic and Normoxic Conditions.","authors":"Ilias Nikolits, Farhad Chariyev-Prinz, Dominik Egger, Falk Liebner, Nicolas Mytzka, Cornelia Kasper","doi":"10.3390/bioengineering11101050","DOIUrl":"https://doi.org/10.3390/bioengineering11101050","url":null,"abstract":"<p><p>Mesenchymal stem cells (MSCs) hold immense therapeutic potential due to their regenerative and immunomodulatory properties. However, to utilize this potential, it is crucial to optimize their in vitro cultivation conditions. Three-dimensional (3D) culture methods using cell-laden hydrogels aim to mimic the physiological microenvironment in vitro, thus preserving MSC biological functionalities. Cellulosic hydrogels are particularly promising due to their biocompatibility, sustainability, and tunability in terms of chemical, morphological, and mechanical properties. This study investigated the impact of (1) two physical crosslinking scenarios for hydrogels derived from anionic cellulose nanofibers (<i>to</i>-CNF) used to encapsulate adipose-derived MSCs (adMSCs) and (2) physiological culture conditions on the in vitro proliferation, differentiation, and extracellular vesicle (EV) production of these adMSCs. The results revealed that additional Ca<sup>2+</sup>-mediated crosslinking, intended to complement the self-assembly and gelation of aqueous <i>to</i>-CNF in the adMSC cultivation medium, adversely affected both the mechanical properties of the hydrogel spheres and the growth of the encapsulated cells. However, cultivation under dynamic and hypoxic conditions significantly improved the proliferation and differentiation of the encapsulated adMSCs. Furthermore, it was demonstrated that the adMSCs in the CNF hydrogel spheres exhibited potential for scalable EV production with potent immunosuppressive capacities in a bioreactor system. These findings underscore the importance of physiological culture conditions and the suitability of cellulosic materials for enhancing the therapeutic potential of MSCs. Overall, this study provides valuable insights for optimizing the in vitro cultivation of MSCs for various applications, including tissue engineering, drug testing, and EV-based therapies.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11504186/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142493997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Scoping Review of 'Smart' Dressings for Diagnosing Surgical Site Infection: A Focus on Arthroplasty. 用于诊断手术部位感染的 "智能 "敷料的范围研究:聚焦关节成形术。
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-21 DOI: 10.3390/bioengineering11101049
Samuel W King, Alexander Abouharb, Thomas Doggett, Mohamad Taufiqurrakhman, Jeya Palan, Bulut Freear, Hemant Pandit, Bernard H van Duren
{"title":"A Scoping Review of 'Smart' Dressings for Diagnosing Surgical Site Infection: A Focus on Arthroplasty.","authors":"Samuel W King, Alexander Abouharb, Thomas Doggett, Mohamad Taufiqurrakhman, Jeya Palan, Bulut Freear, Hemant Pandit, Bernard H van Duren","doi":"10.3390/bioengineering11101049","DOIUrl":"https://doi.org/10.3390/bioengineering11101049","url":null,"abstract":"<p><p>Early diagnosis and treatment of surgical wound infection can be challenging. This is especially relevant in the management of periprosthetic joint infection: early detection is key to success and reducing morbidity, mortality and resource use. 'Smart' dressings have been developed to detect parameters suggestive of infection. This scoping review investigates the current status of the field, limited to devices tested in animal models and/or humans, with a focus on their application to arthroplasty. The literature was searched using MEDLINE/PubMed and Embase databases from 2000 to 2023. Original articles assessing external sensing methods for the detection of wound infection in animal models or human participants were included. Sixteen articles were eligible. The results were broadly divided by sensing method: colorimetric, electrochemical and fluorescence/photothermal responses. Six of the devices detected more than one parameter (multimodal), while the rest were unimodal. The most common parameters examined were temperature and pH. Most 'smart' dressings focused on diagnosing infection in chronic wounds, and none were tested in humans with wound infections. There is limited late-stage research into using dressing sensors to diagnose wound infection in post-surgical patients. Future research should explore this to enable inpatient and remote outpatient monitoring of post-operative wounds to detect wound infection.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11505597/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142493980","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Wearable Online Freezing of Gait Detection and Cueing System. 可穿戴在线步态冻结检测和提示系统。
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-20 DOI: 10.3390/bioengineering11101048
Jan Slemenšek, Jelka Geršak, Božidar Bratina, Vesna Marija van Midden, Zvezdan Pirtošek, Riko Šafarič
{"title":"Wearable Online Freezing of Gait Detection and Cueing System.","authors":"Jan Slemenšek, Jelka Geršak, Božidar Bratina, Vesna Marija van Midden, Zvezdan Pirtošek, Riko Šafarič","doi":"10.3390/bioengineering11101048","DOIUrl":"https://doi.org/10.3390/bioengineering11101048","url":null,"abstract":"<p><p>This paper presents a real-time wearable system designed to assist Parkinson's disease patients experiencing freezing of gait episodes. The system utilizes advanced machine learning models, including convolutional and recurrent neural networks, enhanced with past sample data preprocessing to achieve high accuracy, efficiency, and robustness. By continuously monitoring gait patterns, the system provides timely interventions, improving mobility and reducing the impact of freezing episodes. This paper explores the implementation of a CNN+RNN+PS machine learning model on a microcontroller-based device. The device operates at a real-time processing rate of 40 Hz and is deployed in practical settings to provide 'on demand' vibratory stimulation to patients. This paper examines the system's ability to operate with minimal latency, achieving an average detection delay of just 261 milliseconds and a freezing of gait detection accuracy of 95.1%. While patients received on-demand stimulation, the system's effectiveness was assessed by decreasing the average duration of freezing of gait episodes by 45%. These preliminarily results underscore the potential of personalized, real-time feedback systems in enhancing the quality of life and rehabilitation outcomes for patients with movement disorders.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11505507/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142494066","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Mamba- and ResNet-Based Dual-Branch Network for Ultrasound Thyroid Nodule Segmentation. 基于 Mamba 和 ResNet 的双分支网络用于超声甲状腺结节分类
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-20 DOI: 10.3390/bioengineering11101047
Min Hu, Yaorong Zhang, Huijun Xue, Hao Lv, Shipeng Han
{"title":"Mamba- and ResNet-Based Dual-Branch Network for Ultrasound Thyroid Nodule Segmentation.","authors":"Min Hu, Yaorong Zhang, Huijun Xue, Hao Lv, Shipeng Han","doi":"10.3390/bioengineering11101047","DOIUrl":"https://doi.org/10.3390/bioengineering11101047","url":null,"abstract":"<p><p>Accurate segmentation of thyroid nodules in ultrasound images is crucial for the diagnosis of thyroid cancer and preoperative planning. However, the segmentation of thyroid nodules is challenging due to their irregular shape, blurred boundary, and uneven echo texture. To address these challenges, a novel Mamba- and ResNet-based dual-branch network (MRDB) is proposed. Specifically, the visual state space block (VSSB) from Mamba and ResNet-34 are utilized to construct a dual encoder for extracting global semantics and local details, and establishing multi-dimensional feature connections. Meanwhile, an upsampling-convolution strategy is employed in the left decoder focusing on image size and detail reconstruction. A convolution-upsampling strategy is used in the right decoder to emphasize gradual feature refinement and recovery. To facilitate the interaction between local details and global context within the encoder and decoder, cross-skip connection is introduced. Additionally, a novel hybrid loss function is proposed to improve the boundary segmentation performance of thyroid nodules. Experimental results show that MRDB outperforms the state-of-the-art approaches with DSC of 90.02% and 80.6% on two public thyroid nodule datasets, TN3K and TNUI-2021, respectively. Furthermore, experiments on a third external dataset, DDTI, demonstrate that our method improves the DSC by 10.8% compared to baseline and exhibits good generalization to clinical small-scale thyroid nodule datasets. The proposed MRDB can effectively improve thyroid nodule segmentation accuracy and has great potential for clinical applications.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11504408/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142494013","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring NRB Biofilm Adhesion and Biocorrosion in Oil/Water Recovery Operations Within Pipelines. 探索管道内油水回收作业中的 NRB 生物膜粘附和生物腐蚀。
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-20 DOI: 10.3390/bioengineering11101046
Hadjer Didouh, Hifsa Khurshid, Mohammed Hadj Meliani, Rami K Suleiman, Saviour A Umoren, Izzeddine Sameut Bouhaik
{"title":"Exploring NRB Biofilm Adhesion and Biocorrosion in Oil/Water Recovery Operations Within Pipelines.","authors":"Hadjer Didouh, Hifsa Khurshid, Mohammed Hadj Meliani, Rami K Suleiman, Saviour A Umoren, Izzeddine Sameut Bouhaik","doi":"10.3390/bioengineering11101046","DOIUrl":"https://doi.org/10.3390/bioengineering11101046","url":null,"abstract":"<p><p>Microbially influenced corrosion represents a critical challenge to the integrity and durability of carbon steel infrastructure, particularly in environments conducive to biofilm formation by nitrate-reducing bacteria (NRB). This study investigated the impact of NRB biofilms on biocorrosion processes within oil/water recovery operations in Algerian pipelines. A comprehensive suite of experimental and analytical techniques, including microbial analysis, gravimetric methods, and surface characterization, were employed to elucidate the mechanisms of microbially influenced corrosion (MIC). Weight loss measurements revealed that carbon steel samples exposed to injection water exhibited a corrosion rate of 0.0125 mm/year, significantly higher than the 0.0042 mm/year observed in crude oil environments. The microbial analysis demonstrated that injection water harbored an average of (4.4 ± 0.56) × 10<sup>6</sup> cells/cm<sup>2</sup> for sessile cells and (3.1 ± 0.25) × 10<sup>5</sup> CFU/mL for planktonic cells, in stark contrast to crude oil, which contained only (2.4 ± 0.34) × 10<sup>3</sup> cells/cm<sup>2</sup> for sessile cells and (4.5 ± 0.12) × 10<sup>2</sup> CFU/mL for planktonic cells, thereby highlighting the predominant role of injection water in facilitating biofilm formation. Contact angle measurements of injection water on carbon showed 45° ± 2°, compared to 85° ± 4° for crude oil, suggesting an increased hydrophilicity associated with enhanced biofilm adhesion. Scanning electron microscopy further confirmed the presence of thick biofilm clusters and corrosion pits on carbon steel exposed to injection water, while minimal biofilm and corrosion were observed in the crude oil samples.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11505479/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142494048","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Remote Monitoring of Sympathovagal Imbalance During Sleep and Its Implications in Cardiovascular Risk Assessment: A Systematic Review. 远程监测睡眠期间交感神经失衡及其对心血管风险评估的影响:系统回顾
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-19 DOI: 10.3390/bioengineering11101045
Valerie A A van Es, Ignace L J de Lathauwer, Hareld M C Kemps, Giacomo Handjaras, Monica Betta
{"title":"Remote Monitoring of Sympathovagal Imbalance During Sleep and Its Implications in Cardiovascular Risk Assessment: A Systematic Review.","authors":"Valerie A A van Es, Ignace L J de Lathauwer, Hareld M C Kemps, Giacomo Handjaras, Monica Betta","doi":"10.3390/bioengineering11101045","DOIUrl":"https://doi.org/10.3390/bioengineering11101045","url":null,"abstract":"<p><p>Nocturnal sympathetic overdrive is an early indicator of cardiovascular (CV) disease, emphasizing the importance of reliable remote patient monitoring (RPM) for autonomic function during sleep. To be effective, RPM systems must be accurate, non-intrusive, and cost-effective. This review evaluates non-invasive technologies, metrics, and algorithms for tracking nocturnal autonomic nervous system (ANS) activity, assessing their CV relevance and feasibility for integration into RPM systems. A systematic search identified 18 relevant studies from an initial pool of 169 publications, with data extracted on study design, population characteristics, technology types, and CV implications. Modalities reviewed include electrodes (e.g., electroencephalography (EEG), electrocardiography (ECG), polysomnography (PSG)), optical sensors (e.g., photoplethysmography (PPG), peripheral arterial tone (PAT)), ballistocardiography (BCG), cameras, radars, and accelerometers. Heart rate variability (HRV) and blood pressure (BP) emerged as the most promising metrics for RPM, offering a comprehensive view of ANS function and vascular health during sleep. While electrodes provide precise HRV data, they remain intrusive, whereas optical sensors such as PPG demonstrate potential for multimodal monitoring, including HRV, SpO2, and estimates of arterial stiffness and BP. Non-intrusive methods like BCG and cameras are promising for heart and respiratory rate estimation, but less suitable for continuous HRV monitoring. In conclusion, HRV and BP are the most viable metrics for RPM, with PPG-based systems offering significant promise for non-intrusive, continuous monitoring of multiple modalities. Further research is needed to enhance accuracy, feasibility, and validation against direct measures of autonomic function, such as microneurography.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11504514/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142494040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Interdisciplinary Innovations and Applications of Bionics and Bioengineering in Kinesiology. 仿生学和生物工程在运动学中的跨学科创新和应用。
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-18 DOI: 10.3390/bioengineering11101042
Wei-Hsun Tai, Wenjian Wu, Haibin Yu, Rui Zhang
{"title":"Interdisciplinary Innovations and Applications of Bionics and Bioengineering in Kinesiology.","authors":"Wei-Hsun Tai, Wenjian Wu, Haibin Yu, Rui Zhang","doi":"10.3390/bioengineering11101042","DOIUrl":"https://doi.org/10.3390/bioengineering11101042","url":null,"abstract":"<p><p>Kinesiology, as an interdisciplinary field, emphasizes the study of human physical activity, with a particular focus on biomechanics and sports science [...].</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11505414/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142494008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing Bone Formation Through bFGF-Loaded Mesenchymal Stromal Cell Spheroids During Fracture Healing in Mice. 在小鼠骨折愈合过程中通过 bFGF/Loaded 间充质基质细胞球体促进骨形成
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-18 DOI: 10.3390/bioengineering11101041
Kugo Takeda, Hiroki Saito, Shintaro Shoji, Hiroyuki Sekiguchi, Mitsuyoshi Matsumoto, Masanobu Ujihira, Masayuki Miyagi, Gen Inoue, Masashi Takaso, Kentaro Uchida
{"title":"Enhancing Bone Formation Through bFGF-Loaded Mesenchymal Stromal Cell Spheroids During Fracture Healing in Mice.","authors":"Kugo Takeda, Hiroki Saito, Shintaro Shoji, Hiroyuki Sekiguchi, Mitsuyoshi Matsumoto, Masanobu Ujihira, Masayuki Miyagi, Gen Inoue, Masashi Takaso, Kentaro Uchida","doi":"10.3390/bioengineering11101041","DOIUrl":"https://doi.org/10.3390/bioengineering11101041","url":null,"abstract":"<p><p>This study aimed to evaluate the osteogenic potential of mesenchymal stromal cell (MSC) spheroids combined with the basic fibroblast growth factor (bFGF) in a mouse femur fracture model. To begin, MSC spheroids were generated, and the expression of key trophic factors (<i>bFGF Bmp2</i>, and <i>Vegfa</i>) was assessed using quantitative PCR (qPCR). A binding assay confirmed the interaction between the bFGF and the spheroids' extracellular matrix. The spheroid cultures significantly upregulated <i>bFGF</i>, <i>Bmp2</i>, and <i>Vegfa</i> expression compared to the monolayers (<i>p</i> < 0.001), and the binding assay demonstrated effective bFGF binding to the MSC spheroids. Following these in vitro assessments, the mice were divided into five groups for the in vivo study: (1) no treatment (control), (2) spheroids alone, (3) bFGF alone, (4) bFGF-loaded spheroids (bFGF-spheroids), and (5) non-viable (frozen) bFGF-loaded spheroids (bFGF-dSpheroids). Bone formation was analyzed by a micro-CT, measuring the bone volume (BV) and bone mineral content (BMC) of the mice four weeks post-fracture. A high dose of the bFGF (10 µg) significantly promoted bone formation regardless of the presence of spheroids, as evidenced by the increases in BV (bFGF, <i>p</i> = 0.010; bFGF-spheroids, <i>p</i> = 0.006; bFGF-dSpheroids, <i>p</i> = 0.032) and BMC (bFGF, <i>p</i> = 0.023; bFGF-spheroids, <i>p</i> = 0.004; bFGF-dSpheroids, <i>p</i> = 0.014), compared to the controls. In contrast, a low dose of the bFGF (1 µg) combined with the MSC spheroids significantly increased BV and BMC compared to the control (BV, <i>p</i> = 0.012; BMC, <i>p</i> = 0.015), bFGF alone (BV, <i>p</i> = 0.012; BMC, <i>p</i> = 0.008), and spheroid (BV, <i>p</i> < 0.001; BMC, <i>p</i> < 0.001) groups. A low dose of the bFGF alone did not significantly promote bone formation (<i>p</i> > 0.05). The non-viable (frozen) spheroids loaded with a low dose of the bFGF resulted in a higher BV and BMC compared to the spheroids alone (BV, <i>p</i> = 0.003; BMC, <i>p</i> = 0.017), though the effect was less pronounced than in the viable spheroids. These findings demonstrate the synergistic effect of the bFGF and MSC spheroids on bone regeneration. The increased expression of the BMP-2 and VEGF observed in the initial experiments, coupled with the enhanced bone formation in vivo, highlight the therapeutic potential of this combination. Future studies will aim to elucidate the underlying molecular mechanisms and assess the long-term outcomes for bone repair strategies.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11504918/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142494031","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
GPT-Driven Radiology Report Generation with Fine-Tuned Llama 3. 使用微调 Llama 3 生成 GPT 驱动的放射学报告。
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-18 DOI: 10.3390/bioengineering11101043
Ștefan-Vlad Voinea, Mădălin Mămuleanu, Rossy Vlăduț Teică, Lucian Mihai Florescu, Dan Selișteanu, Ioana Andreea Gheonea
{"title":"GPT-Driven Radiology Report Generation with Fine-Tuned Llama 3.","authors":"Ștefan-Vlad Voinea, Mădălin Mămuleanu, Rossy Vlăduț Teică, Lucian Mihai Florescu, Dan Selișteanu, Ioana Andreea Gheonea","doi":"10.3390/bioengineering11101043","DOIUrl":"https://doi.org/10.3390/bioengineering11101043","url":null,"abstract":"&lt;p&gt;&lt;p&gt;The integration of deep learning into radiology has the potential to enhance diagnostic processes, yet its acceptance in clinical practice remains limited due to various challenges. This study aimed to develop and evaluate a fine-tuned large language model (LLM), based on Llama 3-8B, to automate the generation of accurate and concise conclusions in magnetic resonance imaging (MRI) and computed tomography (CT) radiology reports, thereby assisting radiologists and improving reporting efficiency. A dataset comprising 15,000 radiology reports was collected from the University of Medicine and Pharmacy of Craiova's Imaging Center, covering a diverse range of MRI and CT examinations made by four experienced radiologists. The Llama 3-8B model was fine-tuned using transfer-learning techniques, incorporating parameter quantization to 4-bit precision and low-rank adaptation (LoRA) with a rank of 16 to optimize computational efficiency on consumer-grade GPUs. The model was trained over five epochs using an NVIDIA RTX 3090 GPU, with intermediary checkpoints saved for monitoring. Performance was evaluated quantitatively using Bidirectional Encoder Representations from Transformers Score (BERTScore), Recall-Oriented Understudy for Gisting Evaluation (ROUGE), Bilingual Evaluation Understudy (BLEU), and Metric for Evaluation of Translation with Explicit Ordering (METEOR) metrics on a held-out test set. Additionally, a qualitative assessment was conducted, involving 13 independent radiologists who participated in a Turing-like test and provided ratings for the AI-generated conclusions. The fine-tuned model demonstrated strong quantitative performance, achieving a BERTScore F1 of 0.8054, a ROUGE-1 F1 of 0.4998, a ROUGE-L F1 of 0.4628, and a METEOR score of 0.4282. In the human evaluation, the artificial intelligence (AI)-generated conclusions were preferred over human-written ones in approximately 21.8% of cases, indicating that the model's outputs were competitive with those of experienced radiologists. The average rating of the AI-generated conclusions was 3.65 out of 5, reflecting a generally favorable assessment. Notably, the model maintained its consistency across various types of reports and demonstrated the ability to generalize to unseen data. The fine-tuned Llama 3-8B model effectively generates accurate and coherent conclusions for MRI and CT radiology reports. By automating the conclusion-writing process, this approach can assist radiologists in reducing their workload and enhancing report consistency, potentially addressing some barriers to the adoption of deep learning in clinical practice. The positive evaluations from independent radiologists underscore the model's potential utility. While the model demonstrated strong performance, limitations such as dataset bias, limited sample diversity, a lack of clinical judgment, and the need for large computational resources require further refinement and real-world validation. Future work should explore","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-10-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11504957/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142494052","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Local Heating Profile to Manage Lower Back Pain in an Automotive Seat: A Pilot Study. 治疗汽车座椅下背部疼痛的局部加热曲线:一项试点研究。
IF 3.8 3区 医学
Bioengineering Pub Date : 2024-10-18 DOI: 10.3390/bioengineering11101040
Matt M Mallette, Nathaniel Gur-Arie, Nicola Gerrett
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