Alex Rodriguez Alonso, Ana Sanchez Diez, Goikoane Cancho Galán, Rafael Ibarrola Altuna, Gonzalo Irigoyen Miró, Cristina Penas Lago, Mª Dolores Boyano López, Rosa Izu Belloso
{"title":"利用深度学习和合成数据增强增强组织病理学中的黑色素瘤诊断。","authors":"Alex Rodriguez Alonso, Ana Sanchez Diez, Goikoane Cancho Galán, Rafael Ibarrola Altuna, Gonzalo Irigoyen Miró, Cristina Penas Lago, Mª Dolores Boyano López, Rosa Izu Belloso","doi":"10.3390/bioengineering12091001","DOIUrl":null,"url":null,"abstract":"<p><p>Accurate diagnosis of melanoma using hematoxylin and eosin (H&E)-stained histological images is often challenged by the scarcity and imbalance of biomedical datasets, limiting the performance of deep learning models. This study investigates the impact of synthetic image generation, via generative adversarial networks (GAN), on training automatic classifiers based on the ResNet-18 architecture. Two experimental setups were designed: one using only real images and another combining real images with synthetic ones of the melanocytic nevus class to balance the dataset. Models were trained and evaluated at resolutions up to 1024 × 1024 pixels, employing standard classification metrics and the Fréchet Inception Distance (FID) to assess the quality of the generated images. The results suggest that although mixed models do not consistently outperform those trained exclusively on real data, they achieve competitive performance, particularly in terms of specificity and reduction in false negatives. This study supports the use of synthetic data as a complementary tool in scenarios where the acquisition of new samples is limited and lays the groundwork for future research in conditional generation and synthesis of malignant samples. In our best-performing model (1024 × 1024 px, 50 epochs, mixed dataset), we achieved an accuracy of 96.00%, a specificity of 97.00%, and a reduction in false negatives from 80 to 75 cases compared with real-only training. These results highlight the potential of synthetic augmentation to improve clinically relevant outcomes, particularly in reducing missed melanoma diagnoses.</p>","PeriodicalId":8874,"journal":{"name":"Bioengineering","volume":"12 9","pages":""},"PeriodicalIF":3.7000,"publicationDate":"2025-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12467037/pdf/","citationCount":"0","resultStr":"{\"title\":\"Enhancing Melanoma Diagnosis in Histopathology with Deep Learning and Synthetic Data Augmentation.\",\"authors\":\"Alex Rodriguez Alonso, Ana Sanchez Diez, Goikoane Cancho Galán, Rafael Ibarrola Altuna, Gonzalo Irigoyen Miró, Cristina Penas Lago, Mª Dolores Boyano López, Rosa Izu Belloso\",\"doi\":\"10.3390/bioengineering12091001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Accurate diagnosis of melanoma using hematoxylin and eosin (H&E)-stained histological images is often challenged by the scarcity and imbalance of biomedical datasets, limiting the performance of deep learning models. This study investigates the impact of synthetic image generation, via generative adversarial networks (GAN), on training automatic classifiers based on the ResNet-18 architecture. Two experimental setups were designed: one using only real images and another combining real images with synthetic ones of the melanocytic nevus class to balance the dataset. Models were trained and evaluated at resolutions up to 1024 × 1024 pixels, employing standard classification metrics and the Fréchet Inception Distance (FID) to assess the quality of the generated images. The results suggest that although mixed models do not consistently outperform those trained exclusively on real data, they achieve competitive performance, particularly in terms of specificity and reduction in false negatives. This study supports the use of synthetic data as a complementary tool in scenarios where the acquisition of new samples is limited and lays the groundwork for future research in conditional generation and synthesis of malignant samples. In our best-performing model (1024 × 1024 px, 50 epochs, mixed dataset), we achieved an accuracy of 96.00%, a specificity of 97.00%, and a reduction in false negatives from 80 to 75 cases compared with real-only training. These results highlight the potential of synthetic augmentation to improve clinically relevant outcomes, particularly in reducing missed melanoma diagnoses.</p>\",\"PeriodicalId\":8874,\"journal\":{\"name\":\"Bioengineering\",\"volume\":\"12 9\",\"pages\":\"\"},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2025-09-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12467037/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Bioengineering\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.3390/bioengineering12091001\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Bioengineering","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.3390/bioengineering12091001","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
Enhancing Melanoma Diagnosis in Histopathology with Deep Learning and Synthetic Data Augmentation.
Accurate diagnosis of melanoma using hematoxylin and eosin (H&E)-stained histological images is often challenged by the scarcity and imbalance of biomedical datasets, limiting the performance of deep learning models. This study investigates the impact of synthetic image generation, via generative adversarial networks (GAN), on training automatic classifiers based on the ResNet-18 architecture. Two experimental setups were designed: one using only real images and another combining real images with synthetic ones of the melanocytic nevus class to balance the dataset. Models were trained and evaluated at resolutions up to 1024 × 1024 pixels, employing standard classification metrics and the Fréchet Inception Distance (FID) to assess the quality of the generated images. The results suggest that although mixed models do not consistently outperform those trained exclusively on real data, they achieve competitive performance, particularly in terms of specificity and reduction in false negatives. This study supports the use of synthetic data as a complementary tool in scenarios where the acquisition of new samples is limited and lays the groundwork for future research in conditional generation and synthesis of malignant samples. In our best-performing model (1024 × 1024 px, 50 epochs, mixed dataset), we achieved an accuracy of 96.00%, a specificity of 97.00%, and a reduction in false negatives from 80 to 75 cases compared with real-only training. These results highlight the potential of synthetic augmentation to improve clinically relevant outcomes, particularly in reducing missed melanoma diagnoses.
期刊介绍:
Aims
Bioengineering (ISSN 2306-5354) provides an advanced forum for the science and technology of bioengineering. It publishes original research papers, comprehensive reviews, communications and case reports. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. All aspects of bioengineering are welcomed from theoretical concepts to education and applications. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. There are, in addition, four key features of this Journal:
● We are introducing a new concept in scientific and technical publications “The Translational Case Report in Bioengineering”. It is a descriptive explanatory analysis of a transformative or translational event. Understanding that the goal of bioengineering scholarship is to advance towards a transformative or clinical solution to an identified transformative/clinical need, the translational case report is used to explore causation in order to find underlying principles that may guide other similar transformative/translational undertakings.
● Manuscripts regarding research proposals and research ideas will be particularly welcomed.
● Electronic files and software regarding the full details of the calculation and experimental procedure, if unable to be published in a normal way, can be deposited as supplementary material.
● We also accept manuscripts communicating to a broader audience with regard to research projects financed with public funds.
Scope
● Bionics and biological cybernetics: implantology; bio–abio interfaces
● Bioelectronics: wearable electronics; implantable electronics; “more than Moore” electronics; bioelectronics devices
● Bioprocess and biosystems engineering and applications: bioprocess design; biocatalysis; bioseparation and bioreactors; bioinformatics; bioenergy; etc.
● Biomolecular, cellular and tissue engineering and applications: tissue engineering; chromosome engineering; embryo engineering; cellular, molecular and synthetic biology; metabolic engineering; bio-nanotechnology; micro/nano technologies; genetic engineering; transgenic technology
● Biomedical engineering and applications: biomechatronics; biomedical electronics; biomechanics; biomaterials; biomimetics; biomedical diagnostics; biomedical therapy; biomedical devices; sensors and circuits; biomedical imaging and medical information systems; implants and regenerative medicine; neurotechnology; clinical engineering; rehabilitation engineering
● Biochemical engineering and applications: metabolic pathway engineering; modeling and simulation
● Translational bioengineering