{"title":"Transition from Noncovalent Interaction to Covalent Bond Based on One-Electron Potential, Quantum Chemical Topology, and Molecular Face Theory.","authors":"Xin-Meng Liu, Dong-Xia Zhao, Zhong-Zhi Yang","doi":"10.1021/acs.jpca.5c01773","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c01773","url":null,"abstract":"<p><p>Noncovalent interactions and covalent bonds can be distinguished via quantum chemical topology analysis and molecular face theory, which are based on the potential acting on one electron in a molecule or molecular system (PAEM). A covalent bond forms when a PAEM bond critical point (BCP) occurs on the line connecting two atoms and when their molecular faces contact or fuse together, whereas a noncovalent interaction occurs between two adjacent atoms or chemical species when their molecular faces remain separate. The force acting on one electron within a molecule, which starts at infinity and ends at the BCP, forms nonoverlapping boundary surfaces that partition a molecule into distinct atomic regions. This is demonstrated with the following example reactions: H + H → H<sub>2</sub>, H + <i>X</i> → H<i>X</i> (<i>X</i> = F, Cl, Br, I), O (<sup>1</sup><i>D</i>) + H<sub>2</sub> → H<sub>2</sub>O, and S (<sup>1</sup><i>D</i>) + H<sub>2</sub> → H<sub>2</sub>S. The exploration of the physical quantities at PAEM critical points, such as the eigenvalues of the Hessian matrix, ellipticity, and electron interflow frequency, reveals their changing trends during the transition from a noncovalent interaction to a covalent bond or vice versa. These changes can help predict chemical bond formation or breakage, providing insight into chemical bonding.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Interactions of Neodymium(III) with Small-Molecule Ligands and Coronene Evaluated with DLPNO-CCSD(T).","authors":"Garima S Dobhal, Tiffany R Walsh","doi":"10.1021/acs.jpca.5c01797","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c01797","url":null,"abstract":"<p><p>Determination of the interactions between critical metal ions and single-molecule ligands is key to improving sustainable reclamation processes for critical metals such as electrodeposition of these metals from liquid media. Neodymium, Nd, is one such critical metal that faces rising demand due to its application in permanent strong magnets used in wind turbines and in electric motors of electric vehicles. Previous experimental work identified that trace quantities of water facilitated Nd electrodeposition from ionic liquid (IL) media. Here, interactions of Nd<sup>3+</sup> with TFSI<sup>-</sup> (bis(trifluoromethylsulfonyl)imide), a common anion in ILs, H<sub>2</sub>O (water), C<sub>2</sub>H<sub>6</sub> (ethane, an approximation for long-chained phosphonium and ammonium cations in ILs) and coronene (an approximation for a graphitic electrode surface) are obtained using high-level DLPNO-CCSD(T) calculations. A range of binding orientations/conformations for each small molecule ligand are investigated. The nonadditivity effect is explored to identify the scaling of the interaction energy when one TFSI<sup>-</sup> is added to complexes of Nd(TFSI)<sub><i>x</i></sub> (where <i>x</i> = 1-3) and when one water molecule is added to a Nd(TFSI)<sub>3</sub> complex. The most stable binding configuration is further analyzed using a relativistic Hamiltonian and also, using the local energy decomposition method. The LED method revealed that the interaction is mainly driven by electrostatics and polarization, and that correlation contributes insignificantly to the total interaction energy. This work provides high-quality benchmark data that cannot be obtained from experiment alone, to enable the design of high-quality force fields for simulation studies of the phenomena related to the electrodeposition processes.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Time Delay Distribution and Laser Stability in Arbitrary Detuning Asynchronous Optical Sampling.","authors":"L Antonucci, A Bonvalet, X Solinas, M Joffre","doi":"10.1021/acs.jpca.5c01853","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c01853","url":null,"abstract":"<p><p>Arbitrary Detuning ASynchronous OPtical Sampling (ADASOPS) is an emerging technique for extending standard pump-probe experiments performed with two femtosecond lasers to multitimescale experiments, which are of great interest for the study of complex systems. Although no specific requirements are needed for laser repetition rates, their ratio determines the achievable delay distribution and therefore is strongly related to the temporal resolution of the technique. We report a detailed theoretical analysis of measurement performances with respect to laser repetition rates, and we validate our model with experimental data. In the case of amplified laser systems, we demonstrate that achieved delays are inherently correlated to the time interval between amplified pulses, which affects the pulse energy and can generate artifacts. Nevertheless, a deep understanding of the origin of such artifacts allows to suggest several compensation strategies, either during data analysis or at the conception of the experimental setup. Finally we present a new algorithm integrated into the ADASOPS device: by selecting pairs of probe pulses having the same elapsed time with respect to the previous pulse, it automatically compensates any effect of energy fluctuation.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Anion Resonances and Autodetachment Dynamics of Fluoranthene.","authors":"Kenneth D Wilson, Dillon C Dodge, Etienne Garand","doi":"10.1021/acs.jpca.5c03418","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c03418","url":null,"abstract":"<p><p>Anion resonances could play a key role in anion formation by electron attachment to polycyclic aromatic hydrocarbons which are widely considered to be ubiquitous in the interstellar medium. If present in appreciable abundance, anionic species could facilitate many important astrochemical processes in those environments. Here, we probe the energies, lifetimes, and detachment dynamics of the fluoranthene anion resonances using total photoelectron yield (TPY) spectroscopy in combination with resonant photoelectron imaging of cryogenically cooled ions. Our experiments reveal seven anion resonances in the 6000-34,000 cm<sup>-1</sup> range, two of which are optically dark and only observed after being populated via internal conversion from higher resonances. We show that fast autodetachment from the vibrationally resolved lowest-energy resonance is Franck-Condon in nature and that resonances in the ultraviolet region undergo autodetachment into the T<sub>1</sub> neutral state of fluoranthene. Our resonances assignments are well supported by TD-DFT calculations that consider geometry relaxation and zero-point energy effects.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anh H M Nguyen, Ibrahim Muddasser, David T Anderson
{"title":"High-Resolution Infrared Spectroscopy and Nuclear Spin Conversion of CH<sub>3</sub>D in Solid Parahydrogen: Crystal Field Effects in Nuclear Spin Conversion.","authors":"Anh H M Nguyen, Ibrahim Muddasser, David T Anderson","doi":"10.1021/acs.jpca.5c02100","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c02100","url":null,"abstract":"<p><p>The nuclear spin conversion of CH<sub>3</sub>D isolated in solid parahydrogen (pH<sub>2</sub>) was investigated by high-resolution Fourier transform infrared (FTIR) spectroscopy. From the analysis of the temporal changes in the CH<sub>3</sub>D/pH<sub>2</sub> rovibrational absorption spectra, the nuclear spin conversion rates associated with rotational relaxation from the <i>J</i> = 1, <i>K</i> = 1 state to the <i>J</i> = 0, <i>K</i> = 0 state were determined over the 1.5-4.3 K temperature range. As-deposited CH<sub>3</sub>D/pH<sub>2</sub> samples contain two different crystal structures allowing the CH<sub>3</sub>D nuclear spin conversion rates to be measured for two different trapping sites, which revealed that CH<sub>3</sub>D trapped in hexagonal close-packed (hcp) crystal sites relax more than twice as fast as CH<sub>3</sub>D isolated in face centered cubic (fcc) crystal sites. The nuclear spin conversion rates of CH<sub>3</sub>D trapped in single substitution hcp crystal sites increase rapidly above 2.5 K, but the rates were almost temperature independent below 2 K leading to a limiting nonzero conversion rate of <i>k</i> = 2.76(8) × 10<sup>-3</sup> min<sup>-1</sup> at 1.58(1) K. Comparison of the temperature dependence of the CH<sub>3</sub>D nuclear spin conversion rate measured here with analogous measurements for CH<sub>4</sub> and CD<sub>4</sub> trapped in solid pH<sub>2</sub> shows that CH<sub>3</sub>D relaxes with a rate constant intermediate between CH<sub>4</sub> and CD<sub>4</sub>, and the faster relaxation for species containing deuterium atoms can be qualitatively explained by the quadrupole interaction that is absent in all hydrogen containing CH<sub>4</sub> isotopomers.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525514","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rui-Ping Huo, Xiang Zhang, Kai-Xin Xie, Cai-Feng Zhang, Meng-Yao Li
{"title":"Exploring the Mechanism of DABCO-Catalyzed Diastereoselective Cyclization for the Synthesis of Azetidine Nitrones.","authors":"Rui-Ping Huo, Xiang Zhang, Kai-Xin Xie, Cai-Feng Zhang, Meng-Yao Li","doi":"10.1021/acs.jpca.5c02187","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c02187","url":null,"abstract":"<p><p>The mechanistic details of the DABCO-catalyzed diastereoselective cyclization between β-alkyl nitroolefins and alkylidene malononitriles were elucidated by using dispersion-corrected density functional theory (DFT-D3) calculations at the M06-2X/6-311G(d,p) level with SMD solvation (dichloromethane). The reaction proceeds through four consecutive steps: (i) deprotonation and Michael addition; (ii) 1,3-proton transfer; (iii) Pinner-type cyclization; and (iv) ring contraction. Our computational results demonstrate DABCO's dual catalytic role in both proton abstraction and proton shuttle mechanisms, rationalizing the observed diastereoselectivity. The rate-determining step (ring contraction) exhibits a moderate barrier of 24.9 kcal/mol, consistent with experimental conditions, and the exclusion of alternative pathways (Δ<i>G</i><sup>‡</sup> > 70 kcal/mol) confirms the mechanistic preference. This study provides fundamental insights into stereochemical control and establishes a theoretical framework for designing related organocatalytic transformations.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
B B Bourgeois, A X Dai, C C Carlin, L Yuan, A Al-Zubeidi, W H Cheng, D F Swearer, J A Dionne
{"title":"Catalight─An Open-Source Automated Photocatalytic Reactor Package Illustrated through Plasmonic Acetylene Hydrogenation.","authors":"B B Bourgeois, A X Dai, C C Carlin, L Yuan, A Al-Zubeidi, W H Cheng, D F Swearer, J A Dionne","doi":"10.1021/acs.jpca.5c02883","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c02883","url":null,"abstract":"<p><p>An open-source and modular Python package, Catalight, is developed and demonstrated to automate (photo)catalysis measurements. (Photo)catalysis experiments require studying several parameters to evaluate performance, including the temperature, gas flow rate and composition, illumination power, and spectral profile. Catalight orchestrates measurements over this complicated parameter space and systematically stores, analyzes, and visualizes the results. To showcase the capabilities of Catalight, we perform an automated apparent activation barrier measurement of acetylene hydrogenation over a plasmonic AuPd catalyst on an Al<sub>2</sub>O<sub>3</sub> support, simultaneously varying laser power, wavelength, and temperature in a multiday experiment controlled by a simple Python script. Our chemical results unexpectedly show an increased activation barrier upon light excitation, contrary to previous findings for other plasmonic reactions and catalysts. We show that the reaction rate order with respect to both acetylene and hydrogen remains unchanged upon illumination, suggesting that molecular surface coverage is not changed by light. By analyzing the inhomogeneity of the laser-induced heating, we attribute these results to a partial photothermal effect combined with a photochemical/hot electron-driven mechanism. Our findings highlight the capabilities of a new experiment automation tool; explore the photocatalytic mechanism for an industrially relevant reaction; and identify systematic sources of error in canonical photocatalysis experimental procedures.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525511","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Multidimensional Morse/Long-Range Potential Energy Surface and Predicted Rotational Spectra of the CH<sub>4</sub>-N<sub>2</sub> Complex.","authors":"Xiao-Long Zhang, Hui Li","doi":"10.1021/acs.jpca.5c02139","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c02139","url":null,"abstract":"<p><p>A five-dimensional intermolecular potential energy surface (PES) was developed for the CH<sub>4</sub>-N<sub>2</sub> complex with methane fixed at its experimental equilibrium geometry. Intermolecular potential energies were calculated using the explicitly correlated coupled-cluster [CCSD(T)-F12] approach and the augmented correlation-consistent aug-cc-pVTZ basis set. A multidimensional Morse/long-range function was fitted to 49,385 ab initio points, yielding an analytic PES with a root-mean-square deviation of 0.441 cm<sup>-1</sup>. Rovibrational levels and corresponding wave functions were determined using a discrete variable representation and angular finite basis representation method in conjunction with the Lanczos algorithm. Furthermore, rotational transition frequencies for the CH<sub>4</sub>-N<sub>2</sub> complex were predicted for the first time. The cross second virial coefficient for CH<sub>4</sub>-N<sub>2</sub> was computed to assess the PES, showing reasonable agreement with the existing experimental data.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Gradients of Ground and Excited States for CC2 and ADC(2) in Polarizable Continuum and Atomistic Embeddings within a Generalized PTED Coupling Scheme.","authors":"Christof Hättig, Ansgar Pausch","doi":"10.1021/acs.jpca.5c02873","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c02873","url":null,"abstract":"<p><p>We present a state-specific implementation of ground and excitation energies and analytic gradients thereof for the approximate coupled-cluster singles and doubles model CC2 in polarizable environments that is suitable for the description of long-living charge-transfer excited states. It employs a reaction field potential equilibrated self-consistently with the target state density and includes linear response contributions to account for the excitonic coupling to the optical polarizability of the environment. The implementation is available in combination with the conductor-like screening model COSMO as a polarizable continuum model and an atomistic polarizable embedding in point multipoles and polarizabilities. For COSMO smooth potential energy surfaces and convergence of structure optimizations are obtained with a Gaussian charge model. For the algebraic-diagrammatic construction through second order, ADC(2), with COSMO, it is identical to an earlier implementation [Lunkenheimer, B. and Köhn, A. <i>J. Chem. Theory Comput.</i> <b>2013</b>, <i>9</i>, 977-994] but extends the latter to analytic gradients. Example applications are presented for structures, dipole moments, and emission energies of the charge-transfer and locally excited states of 4-(<i>N</i>,<i>N</i>-dimethylamino)benzonitrile and <i>N</i>-(9-anthryl)carbazole in different solvents. The results demonstrate that not only solvent shifts but also physically correct structures are obtained for strongly polar states in polarizable environments.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144525513","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Anton S Pozdeev, Hyun Wook Choi, Wei-Jia Chen, Lai-Sheng Wang, Ivan A Popov
{"title":"Structural Evolution of Boron Clusters upon Copper Doping in CuB<sub><i>x</i></sub><sup>-</sup> (<i>x</i> = 4-6).","authors":"Anton S Pozdeev, Hyun Wook Choi, Wei-Jia Chen, Lai-Sheng Wang, Ivan A Popov","doi":"10.1021/acs.jpca.5c02881","DOIUrl":"https://doi.org/10.1021/acs.jpca.5c02881","url":null,"abstract":"<p><p>Photoelectron spectroscopy and theoretical calculations are combined to elucidate the structures and chemical bonding of small boron clusters doped with a copper atom, CuB<sub><i>x</i></sub><sup>-</sup> (<i>x</i> = 4-6). Relatively complex spectral features are observed and are interpreted by comparison with the theoretical results. Predicted global minimum structures of CuB<sub><i>x</i></sub><sup>-</sup> (<i>x</i> = 4-6) evince that the Cu atom binds to an apex B atom in each cluster and does not significantly alter the planar boron framework of the corresponding B<sub><i>x</i></sub><sup>-</sup> clusters. Multielectronic transitions (shakeup processes) are observed in all three systems, a manifestation of strong electron correlation effects. Chemical bonding analyses show that the copper atom preferentially binds to the apex sites with the highest electron localization to form a Cu-B covalent bond. The structures and bonding of CuB<sub><i>x</i></sub><sup>-</sup> (<i>x</i> = 4-6) are compared with those of the bare B<sub><i>x</i></sub><sup>-</sup> and the Cu<sub>2</sub>B<sub><i>x</i></sub><sup>-</sup> clusters, providing new insights into the structural and electronic evolution of Cu-doped boron clusters and the transition from Cu-B covalent bonding to ionic bonding.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144504223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}