{"title":"On how some fundamental chemical concepts are correlated by arithmetic, geometric and harmonic means","authors":"Francesco Di Giacomo","doi":"10.1007/s10698-023-09466-x","DOIUrl":"10.1007/s10698-023-09466-x","url":null,"abstract":"<div><p>Examples are given of applications by Pauling, Mulliken, Marcus and G.E.Kimball of the three Pythagorian means to formulate the scales of electronegativity of the elements, to the calculations of rate constants of electron transfer cross-reactions, to the calculation of the observed rate constant as function of activation and diffusion rate constants in the case of mixed reaction-diffusion rates and to the calculation of the effective diffusion coefficient in solution of a salt AB as a whole from the diffusion coefficients of the ions in which it dissociates.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 2","pages":"265 - 268"},"PeriodicalIF":0.9,"publicationDate":"2023-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4595979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Revolutions in science, revolutions in chemistry","authors":"Jeffrey I. Seeman","doi":"10.1007/s10698-023-09467-w","DOIUrl":"10.1007/s10698-023-09467-w","url":null,"abstract":"<div><p>Despite decades of research and thought on the meaning and identification of revolutions in science, there is no generally accepted definition for this concept. This paper presents 13 different characteristics that have been used by philosophers and historians of science to characterize revolutions in science, in general, and in chemistry, in particular. These 13 characteristics were clustered into six independent factors. Suggestions are provided as to the use of these characteristics and factors to evaluate historical events as to their possible categorization as revolutions in chemistry. Challenges to the goal of creating a consensus definition of “revolutions in science” are also presented in this publication.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 2","pages":"321 - 335"},"PeriodicalIF":0.9,"publicationDate":"2023-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4727642","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Why do prima facie intuitive theories work in organic chemistry?","authors":"Hirofumi Ochiai","doi":"10.1007/s10698-023-09470-1","DOIUrl":"10.1007/s10698-023-09470-1","url":null,"abstract":"<div><p>In modern German ‘Anschauung’ is translated as intuition. But in Kant’s technical philosophical context, it means an intuition derived from previous visualizations of physical processes in the world of perceptions. The nineteenth century chemists’ predilection for Kantian Anschauung led them to develop an intuitive representation of what exists beyond the bounds of the senses. Molecular structure is one of the illuminating outcomes. (Ochiai 2021, pp. 1–51) This mental habit seems to be dominant among chemists even in the twentieth century, as is illustrated by the electronic theory of organic chemistry and the frontier orbital theory as well. The former assumes that (1) bonds are paired electrons shared by bonded atoms—in fact, electrons in molecules are not localized in bonds; (2) the difference of electronegativities between bonded atoms causes electron drifts—expressed by the curly arrow—that result in bond formation or bond cleavage. The latter focuses on the orbitals that make the greatest contribution to the energy of a system undergoing electron delocalization, while the LCAO method says, as is suggested by the word Linear Combination of Atomic Orbitals, molecular orbitals should be constructed from all of the atomic orbitals that have the appropriate symmetry. In other words, every molecular orbital contributes to some extent to the electronic state of a molecule. The curly arrow in the electronic theory and the orbital lobe in the frontier orbital theory illustrate an intuitive character of these theories. Although both theories rely on such simple and qualitative models rather than mathematically rigid quantum mechanical calculations, they are successful in explaining, predicting, and designing chemical reactions. What makes these <i>prima facie</i> intuitive theories so successful? In this study we address this problem from a historical and philosophical as well as scientific point of view. The key to solve this problem is that they are concerned with only bond formation or bond cleavage, in which the localized-bond principle holds.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 3","pages":"359 - 367"},"PeriodicalIF":0.9,"publicationDate":"2023-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"77827493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Interpreting the bonding of B2H6 and the nature of the 3-center-2-electron bond: decisive test of theory of valency","authors":"Gareth R. Eaton","doi":"10.1007/s10698-023-09469-8","DOIUrl":"10.1007/s10698-023-09469-8","url":null,"abstract":"<div><p>Many pictures of the bonding of B<sub>2</sub>H<sub>6</sub> have been presented over the past century, starting with a strong effort to force B<sub>2</sub>H<sub>6</sub> to fit the ideas that were current for C<sub>2</sub>H<sub>6</sub> and building to now viewing the molecular orbital model as the basis for a new transferrable concept of a 3-center-2-electron bond that stimulates creation of new chemistry. Even now, though, some would view this special bond more like a protonated double bond. The historical development of the current understanding of bonding in B<sub>2</sub>H<sub>6</sub> is summarized here.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 2","pages":"285 - 298"},"PeriodicalIF":0.9,"publicationDate":"2023-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4176100","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The poetry of the universe, the periodic table, and the scientific progress: a review of new studies on the periodic table of the elements","authors":"Klaus Ferdinand Gärditz","doi":"10.1007/s10698-023-09468-9","DOIUrl":"10.1007/s10698-023-09468-9","url":null,"abstract":"<div><p>In 1869, two distinguished scientists, Dimitri Mendeleev and Lothar Meyer, discovered a certain periodicity among the chemical characteristics of the then known elements. Both developed first versions of the periodic table, independently. In the wake of the 150th anniversary, UNESCO proclaimed 2019 the “International Year of the Periodic Table of Chemical Elements”. Two lucid and detailed studies on the periodic table—accompanied by smaller studies on the occasion of the anniversary—have been published, recently, one of them analysing the scientific history, contributing to the (philosophical) theory of science (Eric Scerri), the other analysing the structures, patterns, and irregularities of the table (Geoff Rayner-Canham). Both studies are profound and vivid examples how scientific progress works. They illustrate that even in hard sciences—mirroring Merton’s concept of middle range theory—the required degree of exactness can remain on an intermediate level, as imperfection allows interpretations which could not (yet) be reached by pure mathematics and logic. Both of these brilliant studies provide valuable material, especially for a social science, to better understand how scientific ideas develop, how the power of visualization helps shape ideas, and how contingency is absorbed by the scientific process.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 2","pages":"269 - 283"},"PeriodicalIF":0.9,"publicationDate":"2023-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10698-023-09468-9.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4511581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"On a unified theory of acids and bases: Hasok Chang, Eric R. Scerri, modern theoretical chemistry, and the philosophy of chemistry","authors":"Dean J. Tantillo, Jeffrey I. Seeman","doi":"10.1007/s10698-022-09456-5","DOIUrl":"10.1007/s10698-022-09456-5","url":null,"abstract":"<div><p>Recent publications by several leading philosophers of chemistry have focused on the definition, scope, utility, and nomenclature of issues dealing with acidity and basicity. In this paper, molecular orbital theory is used to explain all acid–base reactions, concluding that the interaction of the highest occupied molecular orbital (HOMO) of one substrate, “the base,” with the lowest unoccupied molecular orbital (LUMO) of a second substrate, “the acid,” determines the reactivity of such systems. This paradigm provides an understanding of all acid–base reactions as well as other reactions which, on the surface, may not seem like acid–base reactions but which have fundamental underpinnings of that kind of chemistry. Rather than being unable to determine a unified understanding of acidity and basicity as suggested in the philosophy of chemistry literature, we propose that acidity and basicity fit securely in a classification of many other reactions that, using classical chemistry knowledge, pre-quantum chemistry, would not be possible. We strongly support the use of all scientific knowledge and experience in the development of the ideas in the philosophy science. We further suggest increased interactions between philosophers of science and scientists, so that all scholars benefit from the values, knowledge, and perspectives of other disciplines.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 2","pages":"299 - 320"},"PeriodicalIF":0.9,"publicationDate":"2023-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4132711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction to: A process ontology approach in biochemistry: the case of GPCRs and biosignaling","authors":"Fiorela Alassia","doi":"10.1007/s10698-022-09461-8","DOIUrl":"10.1007/s10698-022-09461-8","url":null,"abstract":"<div><p>According to process ontology in the philosophy of biology, the living world is better understood as processes rather than as substantial individuals. Within this perspective, an organism does not consist of a hierarchy of structures like a machine, but rather a dynamic hierarchy of processes, dynamically maintained and stabilized at different time scales. With this respect, two processual approaches on enzymes by Stein (Hyle Int J Philos Chem 10(4):5–22, 2004, Process Stud 34:62–80, 2005, Found Chem 8:3–29, 2006) and by Guttinger (Everything Flows: Towards a Processual Philosophy of Biology, Oxford University Press, Oxford, 2018) allows to think of macromolecules as relational and processual entities. In this work, I propose to extend their arguments to another case study within the biochemical domain, which is the case of ligand receptors and receptor-mediated biosignaling. The aim of this work is to analyze the case of G Protein-Coupled Receptors and biosignaling under the consideration of a processual ontology. I will defend that the processual ontology framework is adequate for the biochemical domain and that it allows accounting for the current biochemical knowledge related to the case study.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 1","pages":"189 - 206"},"PeriodicalIF":0.9,"publicationDate":"2023-01-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4789118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction to: Name game: the naming history of the chemical elements—part 1—from antiquity till the end of 18th century","authors":"Paweł Miśkowiec","doi":"10.1007/s10698-022-09462-7","DOIUrl":"10.1007/s10698-022-09462-7","url":null,"abstract":"","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 1","pages":"53 - 55"},"PeriodicalIF":0.9,"publicationDate":"2023-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10698-022-09462-7.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4681611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Correction: Book review of Paul Sen’s, “Einstein’s Fridge. How the difference between hot and cold explains the universe” ISBN: 978-1-5011-8130-6","authors":"Robert T. Hanlon","doi":"10.1007/s10698-022-09465-4","DOIUrl":"10.1007/s10698-022-09465-4","url":null,"abstract":"","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 2","pages":"339 - 339"},"PeriodicalIF":0.9,"publicationDate":"2023-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4681618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Entropy and sign conventions","authors":"G. M. Anderson","doi":"10.1007/s10698-022-09463-6","DOIUrl":"10.1007/s10698-022-09463-6","url":null,"abstract":"<div><p>It is a fundamental cornerstone of thermodynamics that entropy (<span>(S_{U,V})</span>) increases in spontaneous processes in isolated systems (often called closed or thermally closed systems when the transfer of energy as work is considered to be negligible) and achieves a maximum when the system reaches equilibrium. But with a different sign convention entropy could just as well be said to decrease to a minimum in spontaneous constant <i>U</i>, <i>V</i> processes. It would then change in the same direction as the thermodynamic potentials in spontaneous processes. This article discusses but does not advocate such a change.</p></div>","PeriodicalId":568,"journal":{"name":"Foundations of Chemistry","volume":"25 1","pages":"119 - 125"},"PeriodicalIF":0.9,"publicationDate":"2023-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10698-022-09463-6.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4253969","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}