Biodegradation最新文献

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Bioconversion of wheat and bean straw by thermo-alkaliphilic actinomycetes for enhanced polygalacturonase yield: statistical optimization and industrial application 热嗜碱放线菌对小麦和豆秸进行生物转化以提高聚半乳糖醛酸酶产量:统计优化和工业应用
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-17 DOI: 10.1007/s10532-026-10338-2
Abd El-Rahman Fathy Gomaa, Mohamed H. El-Sayed, Omar Mohammad Atta, Sheng Qin, Amany A. Hassan
{"title":"Bioconversion of wheat and bean straw by thermo-alkaliphilic actinomycetes for enhanced polygalacturonase yield: statistical optimization and industrial application","authors":"Abd El-Rahman Fathy Gomaa,&nbsp;Mohamed H. El-Sayed,&nbsp;Omar Mohammad Atta,&nbsp;Sheng Qin,&nbsp;Amany A. Hassan","doi":"10.1007/s10532-026-10338-2","DOIUrl":"10.1007/s10532-026-10338-2","url":null,"abstract":"<div><p>Extremophilic actinomycetes are promising microbial candidates in biotechnology due to their ability to decompose various agricultural wastes and are used to produce several enzymes with important applied properties. This study explored the biotechnological potential of <i>Streptomyces griseorubens</i> NBR14 and <i>Nocardiopsis synnemataformans</i> NBR9 by evaluating their polygalacturonase production from wheat and bean straw, and assessing the enzyme’s efficacy in fruit juice clarification, as well as their ability to decolorize crystal violet. To optimize enzyme production, experiments with four variables were conducted using Box-Behnken design (BBD), followed by analysis of variance (ANOVA). The enzyme was then partially purified using acetone, followed by analyzing its properties and potential applications in fruit juice clarification. The optimal conditions for polygalacturonase (PG) activity by NBR14 and NBR9 were 40 °C, pH 9 and 7, incubation for 7 days, and substrate concentrations 2 and 3 g/100 mL, resulting in enzyme yields of 3.54- and 2.20-folds respectively. Partially purified polygalacturonase resulted in 7.07 and 2.99-fold purification, with recoveries of 33.5% and 16.61%, and specific activities of 177.9 and 72.13 U/mg, respectively. Both NBR14 and NBR9 partially purified polygalacturonase exhibited high relative activity at 40 °C and pH value 7. It remained 90% and 88% active at pH 9.0 and 64% and 81% at 60 °C, respectively. The maximum clarity recorded for apple juice was 82.75% and 85.75%, while orange juice clarity was noted at 61.77% and 83.31% for NBR14 and NBR9, respectively. These results highlight the potential of thermo-alkali stable polygalacturonase from extremophilic actinomycetes as a long-term and cost-effective biocatalyst for agro-waste valorization and industrial fruit juice processing.</p><h3>Graphical Abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148466418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Microbial biodegradation of polypropylene microplastics: a comparative assessment of single- and dual-species models 聚丙烯微塑料的微生物生物降解:单物种和双物种模型的比较评估
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-17 DOI: 10.1007/s10532-026-10333-7
Veena Vinod, P. S. Amritha, P. B. Harathi
{"title":"Microbial biodegradation of polypropylene microplastics: a comparative assessment of single- and dual-species models","authors":"Veena Vinod,&nbsp;P. S. Amritha,&nbsp;P. B. Harathi","doi":"10.1007/s10532-026-10333-7","DOIUrl":"10.1007/s10532-026-10333-7","url":null,"abstract":"<div><p>Microplastics (MPs) are persistent environmentalpollutants with adverse effects on ecosystems and health. Microbial biodegradation is a promising remediation strategy, yet microbial efficiency varies based on species and experimental conditions. However, comparative studies evaluating the performance of single-species and dual-species degradation of polypropylene microplastics (PPMPs) remain limited. Therefore, the present study investigated the PPMP- degradation potential of <i>Pseudomonas aeruginosa</i>, <i>Bacillus subtilis</i>, and <i>Lactobacillus plantarum</i> in single- and dual-species systems over a 30-day incubation period under controlled conditions on PPMPs. Growth kinetics, weight loss, FTIR spectroscopy, SEM imaging, and GC–MS analysis were employed to assess microbial degradation of PPMPS. The results demonstrated significant MP degradation in the presence of all bacterial species, with the dual-species model showing enhanced degradation efficiency compared to individual strains. Single-species degradation yielded 28.6% weight loss of MP for <i>P. aeruginosa</i>, 12% for <i>B. subtilis</i>, and 16% for <i>L. plantarum</i>. Dual-species models achieved 49% weight loss in <i>P. aeruginosa</i> and <i>B. subtilis</i>, 32% in <i>B. subtilis</i> and <i>L. plantarum</i>, and 20% in <i>L. plantarum</i> and <i>P. aeruginosa</i>, indicating higher polymer breakdown in the dual-species model. FTIR spectra revealed chemical modifications indicative of polymer oxidation, increased transmittance, e.g., 2978 cm<sup>−1</sup> (C–H alkane, up to 101%), 1735 cm<sup>−1</sup> (C=O carbonyl), 3657 cm<sup>−1</sup> (O–H), new peaks like 1450 cm<sup>−1</sup> (C–H bend). SEM imaging confirmed microbial colonisation, biofilm formation, and structural deterioration of PPMP surfaces. GC–MS analysis identified degradation byproducts, including monomers, acids, esters, and additives, confirming microbial catabolism of PPMPs. This study highlights the effectiveness of microbial biodegradation and underscores the potential of microbial consortia for MP remediation.</p></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148466417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A review of toxicity and remediation: thorium uptake by woody plants 木本植物对钍的毒性及修复研究进展。
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-14 DOI: 10.1007/s10532-026-10335-5
P. K. Manigandan
{"title":"A review of toxicity and remediation: thorium uptake by woody plants","authors":"P. K. Manigandan","doi":"10.1007/s10532-026-10335-5","DOIUrl":"10.1007/s10532-026-10335-5","url":null,"abstract":"<div><p>Thorium is an extremely radioactive and hazardous material and there is increasing concern over the environmental impact of thorium on the health of soils. There have been a limited number of investigations into phytotoxicity, phytoremediation, and the mechanisms of thorium absorption by woody plants. The purpose of this review is to assess the impact of thorium on soil's physical, chemical, and biological characteristics and quantify how much thorium is available for woody plant uptake and how much thorium will be moved around within different parts of the plant. This review also examines the bioavailability, mobility and root uptake of thorium by woody plants. The extent to which woody plants absorb thorium has been reviewed according to three activity concentration rates: low, moderate and high. Furthermore, literature was reviewed and analyzed as to how woody plant absorption may be influenced by having elevated quantities of thorium in the soil, which exceeds the toxic threshold. Thorium adversely affects all living things through hindering seed germination, reducing plant growth, inhibiting photosynthetic rate, and reducing the plants’ ability to absorb nutrients; thorium has not been demonstrated to have any biological function. Woody Plants can employ several methods to combat the negative effects of thorium, such as producing phytochelatins, utilizing multiple compartments for storing thorium, and producing many different types of enzymes that function as antioxidants. Therefore, there are numerous technologically based and microbially based methods available for remediating thorium-contaminated soils, one of which is the use of specific plant species as remedial agents. Finally, a thorough review of literature was performed to identify all native woody plants that are best adapted for phytoremediation of thorium-contaminated soils and the mechanisms used by these native woody plant species to protect themselves from the toxic effects of thorium contamination were determined.</p><h3>Graphical abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148434646","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacteria in bioremediation of metal waste-contaminated soils across sub-saharan Africa: mechanisms, driving factors, and efficiency 撒哈拉以南非洲金属废物污染土壤生物修复中的细菌:机制、驱动因素和效率。
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-14 DOI: 10.1007/s10532-026-10339-1
Agnes Uwimbabazi, Subbaiya Ramasamy, Theodore M. Mwamba, Stephen Syampungani
{"title":"Bacteria in bioremediation of metal waste-contaminated soils across sub-saharan Africa: mechanisms, driving factors, and efficiency","authors":"Agnes Uwimbabazi,&nbsp;Subbaiya Ramasamy,&nbsp;Theodore M. Mwamba,&nbsp;Stephen Syampungani","doi":"10.1007/s10532-026-10339-1","DOIUrl":"10.1007/s10532-026-10339-1","url":null,"abstract":"<div><p>In recent years, the negative environmental and health impacts of mining activities have significantly expanded in Sub-Saharan Africa (SSA) due to large volumes of metal waste. This systematic review identified metal-resistant bacteria, mechanisms and drivers of tolerance, and efficiency of bacterial bioremediation in metal-contaminated soils across SSA. Gaps in the literature and future research directions were also highlighted. We conducted a systematic review and synthesize information from articles published from 2005 to February 2026. Our results documented 26 types of metal waste generated from mining across SSA, with heavy metals predominating (87.4%). Notably, members of the <i>Bacillus</i> and <i>Pseudomonas</i> genera were prevalent across multiple metals, highlighting their functional redundancy and multiple bioremediation mechanisms in response to metal stress. The bacteria associated with Pb and Cd showed a high Pairwise Jaccard similarity index (0.78). The most frequently reported driving factors of bacterial bioremediation included environmental factors, metal chemistry, bacterial genetic and molecular resistance, with certain bacteria demonstrating high metal removal efficiencies under laboratory conditions. Despite these useful findings, this systematic review identified a restricted geographical scope among the studies and limited field-based application, which may limit our understanding of the field application of bacterial bioremediation of metal waste across SSA. However, diverse and indigenous bacterial microbiomes adapted to complex regional conditions present the opportunities to advance bacterial bioremediation through the integration of emerging techniques such as microbial-assisted phytoremediation, nanotechnology and genetic modification.</p><h3>Graphical abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148434759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Screening for potent Polyethylene terephthalate (PET) degrading fungi: optimization of lipase production media and assessment of PET fabric waste degradation 高效聚对苯二甲酸乙二醇酯(PET)降解真菌的筛选:脂肪酶生产培养基的优化和PET织物废弃物降解评价。
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-14 DOI: 10.1007/s10532-026-10334-6
Koushika Saravanan, Sudharshini Elumalai, Preethi Kathirvel
{"title":"Screening for potent Polyethylene terephthalate (PET) degrading fungi: optimization of lipase production media and assessment of PET fabric waste degradation","authors":"Koushika Saravanan,&nbsp;Sudharshini Elumalai,&nbsp;Preethi Kathirvel","doi":"10.1007/s10532-026-10334-6","DOIUrl":"10.1007/s10532-026-10334-6","url":null,"abstract":"<div><p>The escalating environmental impact of polyethylene terephthalate (PET) waste, particularly from synthetic fabrics, necessitates sustainable degradation strategies. This study focused on the screening of potent fungal isolates capable of degrading PET, with a specific emphasis on optimizing lipase production, a key enzyme involved in ester bond hydrolysis. The isolates were primarily screened for the production of PET degradation enzymes qualitatively and quantitatively. Among the screened isolates, PPS3 showed the highest PET fabric waste degradation efficiency of 13.6 ± 1.31% in quantitative screening. Based on 18S rRNA partial gene sequencing, this potent isolate was identified as <i>Aspergillus niger</i> and was utilized for further optimization and degradation experiments. Bioprocess variables influencing fungal lipase enzyme production were optimized through ‘One-factor-at-a-time’ (OFAT) approach. The optimized lipase production media was inoculated with the potent fungal isolate along with the PET waste and kept for 10 weeks of incubation. A weight loss of approximately 55 ± 2.38% was recorded, corresponding to the reduction in PET substrate mass, which demonstrates the degradation potential of the lipase enzyme. The PET degradation potential of the selected isolate was assessed through surface morphology changes (FESEM), and functional group modification (FTIR). Results demonstrated substantial PET fabric degradation, confirming the efficacy of the fungal strain and the importance of lipase in the biodegradation process. This study presents a promising biotechnological approach for mitigating PET pollution through microbial intervention and enzyme optimization.</p></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148434751","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Revolutionizing the potential of laccase from Bacillus paralicheniformis as an eco-friendly solution to reduce polychlorinated dibenzofurans contamination through integrated computational approach 通过综合计算方法,革新副青衣芽孢杆菌漆酶作为减少多氯二苯并呋喃污染的环保解决方案的潜力。
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-07 DOI: 10.1007/s10532-026-10337-3
Muhammad Naveed, Ayesha Saleem, Tariq Aziz, Urooj Rasheed, Arooj Azeem, Maryum Rasheed, Manal F. Elkhadragy, Ashwag Shami, Hanan Abdulrahman Sagini, Rewaa S. Jalal, Hayam A. Alwabsi, Fakhria A. Al-Joufi
{"title":"Revolutionizing the potential of laccase from Bacillus paralicheniformis as an eco-friendly solution to reduce polychlorinated dibenzofurans contamination through integrated computational approach","authors":"Muhammad Naveed,&nbsp;Ayesha Saleem,&nbsp;Tariq Aziz,&nbsp;Urooj Rasheed,&nbsp;Arooj Azeem,&nbsp;Maryum Rasheed,&nbsp;Manal F. Elkhadragy,&nbsp;Ashwag Shami,&nbsp;Hanan Abdulrahman Sagini,&nbsp;Rewaa S. Jalal,&nbsp;Hayam A. Alwabsi,&nbsp;Fakhria A. Al-Joufi","doi":"10.1007/s10532-026-10337-3","DOIUrl":"10.1007/s10532-026-10337-3","url":null,"abstract":"<div><p>Several risks to ecosystems and human health are increasing day by day and among them, Polychlorinated dibenzofurans (PCDFs) are persistent environmental pollutants which pose significant risks because of its resistance, bioaccumulation, and toxicity. Their effective degradation remains a pressing challenge for sustainable environmental remediation. This study investigates the potential of the laccase enzyme from <i>Bacillus paralicheniformis</i> as an eco-friendly solution to reduce PCDF contamination. The enzyme’s structural and functional properties were analyzed using advanced computational tools such as Discovery Studio, Prankweb, and MetaCyc, which identified key binding sites and metabolic pathways involved in aromatic compound degradation. Toxicity assessments using ToxinPred and Toxtree confirmed the non-toxic nature of laccase and the systemic toxicity of PCDFs. Molecular docking studies showed high binding affinities between laccase and PCDFs, particularly 1,2,3,4,7,8-Hexachlorodibenzofuran and 1,2,3,7,8-Pentachlorodibenzofuran, with binding energies of −7.3 and −7.2 kcal/mol, respectively. Interaction analyses highlighted PRO A:433, HIS B:431, and LYS B:466 residues involved in the stabilization of the enzyme–substrate complex. Molecular dynamics simulations for 100 ns further indicated the stability of the docked complex. These findings demonstrate the laccase enzyme’s potential as a safe and effective tool for bioremediation, providing a foundation for eco-friendly strategies to mitigate PCDF contamination.</p></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148403162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Next-generation biodegradation of chlorpyrifos: integrative microbial strategies, molecular mechanisms, and environmental impacts 毒死蜱下一代生物降解:综合微生物策略、分子机制和环境影响。
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-06 DOI: 10.1007/s10532-026-10329-3
Sushma Gautam, Jyoti Sharma, Monu Sharma, Sonu Sharma, Raman Kumar, Vivek Sheel, Parul Gautam, Ahmad Umar, Abdulrab Ahmed M. Alkhanjaf, Ahmed A. Ibrahim, Sotirios Baskoutas
{"title":"Next-generation biodegradation of chlorpyrifos: integrative microbial strategies, molecular mechanisms, and environmental impacts","authors":"Sushma Gautam,&nbsp;Jyoti Sharma,&nbsp;Monu Sharma,&nbsp;Sonu Sharma,&nbsp;Raman Kumar,&nbsp;Vivek Sheel,&nbsp;Parul Gautam,&nbsp;Ahmad Umar,&nbsp;Abdulrab Ahmed M. Alkhanjaf,&nbsp;Ahmed A. Ibrahim,&nbsp;Sotirios Baskoutas","doi":"10.1007/s10532-026-10329-3","DOIUrl":"10.1007/s10532-026-10329-3","url":null,"abstract":"<div><p>Chlorpyrifos (CP) belongs to organophosphate pesticide group. It is extensively applied in agricultural and household settings due to its broad-spectrum insecticidal properties. However, its persistence, bioaccumulative behavior, and toxicological effects on non-target organisms, including humans, pose significant environmental and public health concerns. CP and its metabolites, particularly two including 3,5,6-trichloropyridinol (TCP) and chlorpyrifos-oxon (CPO), have been recently reported to be widely found various samples such as in soils, sediments, water bodies, crops, and even human biological fluids. These compounds disrupt biogeochemical cycles, alter soil microbial communities, inhibit enzyme activities, and are linked to neurotoxicity, endocrine disruption, and genotoxic effects. Conventional remediation strategies such as photodegradation, ultrasonication, and filtration remain ineffective due to incomplete degradation and secondary pollution risks. Recent studies highlight the efficiency of microbial degradation, especially by bacteria such as <i>Bacillus</i>, <i>Klebsiella, Pseudomonas</i> and <i>Enterobacter</i> as a promising, eco-friendly alternative. These microorganisms utilize CP as a only carbon source, and degradation calibre is greatly governed by various abiotic factors like pH, temperature, and moisture. The genetic as well as enzymatic analyses reveal key roles of organophosphorus hydrolases encoded by genes such as <i>opd</i> and <i>mpd</i>. The integration of plant growth-promoting traits and laccase activity further enhances their bioremediation capability. Additionally, recent advancements in biosensing techniques for CP detection offer improved sensitivity and real-time monitoring. This review provides a comprehensive analysis of CP’s environmental fate, toxicological impact, degradation pathways, and the emerging role of bacterial bioremediation, highlighting its potential for sustainable environmental detoxification.</p></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148389633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A nitrification bioreactor applied solely with ammonium and inorganic C maintains a highly diverse bacterial and archaeal community even after nine years 一个硝化生物反应器仅使用氨和无机C,即使在9年后仍保持高度多样化的细菌和古细菌群落。
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-06 DOI: 10.1007/s10532-026-10288-9
Luc Dendooven, Saúl López-Vázquez, Valentín Pérez-Hernández, Mario Hernández-Guzmán, Nina M. Montoya-Ciriaco, Marco Luna-Guido, Frederic Thalasso, Yendi E. Navarro-Noya
{"title":"A nitrification bioreactor applied solely with ammonium and inorganic C maintains a highly diverse bacterial and archaeal community even after nine years","authors":"Luc Dendooven,&nbsp;Saúl López-Vázquez,&nbsp;Valentín Pérez-Hernández,&nbsp;Mario Hernández-Guzmán,&nbsp;Nina M. Montoya-Ciriaco,&nbsp;Marco Luna-Guido,&nbsp;Frederic Thalasso,&nbsp;Yendi E. Navarro-Noya","doi":"10.1007/s10532-026-10288-9","DOIUrl":"10.1007/s10532-026-10288-9","url":null,"abstract":"<div><p>The archaeal and bacterial community was determined in a continuous aerobic nitrifying reactor maintained under similar conditions for &gt; 9 years, applied solely with ammonium as energy source and carbonate as C source. The high-throughput shotgun analysis revealed 4483 bacterial and 245 archaeal species that thrived on the metabolites provided by the autotrophic nitrifying population, mostly the ammonia oxidizing bacteria <i>Nitrosomonas europaea</i> and archaea <i>Candidatus</i> Nitrosocosmicus exaquare, and the nitrite oxidizing bacteria <i>Nitrobacter winogradskyi</i> and <i>N. hamburgensis</i>. <i>Candidatus</i> Nitrospira inopinata capable of oxidizing ammonia to nitrate was also detected. Although the reactor was supplied with sufficient O<sub>2</sub>, the anaerobic bacteria <i>Candidatus</i> Kuenenia stuttgardiensis capable of oxidizing ammonium to dinitrogen gas using nitrite as the electron acceptor under anoxic conditions (anammox) and four archaeal genera of the strict Methanobacteriaceae were detected in the reactor. A wide range of genes encoding for the different processes involved in N cycling were detected including the <i>hzo</i> gene encoding for the hydrazine oxidoreductase participating in the anaerobic anammox process. It was found that a bioreactor applied only with ammonium as energy source and maintained for &gt; 9 years under steady state conditions contained a highly diverse bacterial and archaeal population and a wide range of metabolic processes related to the N cycle, which has not been reported before. This provides us with comprehensive insights into the dynamics of microbial communities in these types of systems.</p><h3>Graphical abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10532-026-10288-9.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148389688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhanced degradation mechanism of pyrene by Fe/Mn-modified biochar immobilized microorganisms under Cd(II) coexistence Fe/ mn改性生物炭固定化微生物在Cd(II)共存条件下增强芘降解机理
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-02 DOI: 10.1007/s10532-026-10331-9
Hongyang Ren, Suping Jing, Shuangli Chen, Jie Jin, Boyu Chen, Xuanbei Wu
{"title":"Enhanced degradation mechanism of pyrene by Fe/Mn-modified biochar immobilized microorganisms under Cd(II) coexistence","authors":"Hongyang Ren,&nbsp;Suping Jing,&nbsp;Shuangli Chen,&nbsp;Jie Jin,&nbsp;Boyu Chen,&nbsp;Xuanbei Wu","doi":"10.1007/s10532-026-10331-9","DOIUrl":"10.1007/s10532-026-10331-9","url":null,"abstract":"<div><p>To address the issues of low remediation efficiency and microbial toxicity stress in soils contaminated with both Cd(II) and pyrene, this study prepared Fe/Mn-modified biochar from buckwheat hulls, screened pyrene-degrading bacterial strains, and developed an immobilized bacterial agent (PFMBC). Using free-living bacteria (YL) and unmodified biochar-immobilized bacterial agent (PBC) as controls, to investigate their pyrene degradation performance and mechanisms under different Cd(II) concentrations. Carrier properties were characterized using XPS and FTIR, microbial physiological indicators and enzyme activities were measured, and pyrene metabolites were analyzed via GC–MS. The results showed that PFMBC exhibited the best degradation performance, achieving a 77.23% pyrene degradation rate after 15 days under 20 mg/L Cd(II) conditions and 60.09% under 60 mg/L Cd(II) stress, which was significantly superior to the controls. Fe/Mn modification enhances the Cd(II) adsorption and immobilization capacity of biochar, promotes microbial secretion of extracellular polymeric substances(EPS), increases biofilm stability, reduces cell membrane damage and ROS accumulation, significantly boosts the activity of catechol dioxygenase, dehydrogenase, and catalase, accelerates the ring-opening oxidation and metabolism of pyrene, alters the degradation pathway, and reduces the accumulation of recalcitrant intermediate products. This study elucidated the synergistic mechanism by which Fe/Mn-modified biochar-immobilized bacterial agents enhance pyrene degradation under laboratory simulated Cd(II)-pyrene co-contamination conditions. The results offer a laboratory-scale theoretical basis and experimental reference for the remediation of Cd(II)-pyrene co-contaminated soil, whereas its actual field remediation efficiency and environmental applicability remain to be verified in further field investigations.</p><h3>Graphical abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148366507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Harnessing the power of date fruit: nutritional, bioactive, and functional roles in sustainable nutrition 利用枣果的力量:营养、生物活性和可持续营养中的功能作用。
IF 4.2 4区 生物学
Biodegradation Pub Date : 2026-07-01 DOI: 10.1007/s10532-026-10332-8
Emad H. Khedr, Maryam M. Alomran
{"title":"Harnessing the power of date fruit: nutritional, bioactive, and functional roles in sustainable nutrition","authors":"Emad H. Khedr,&nbsp;Maryam M. Alomran","doi":"10.1007/s10532-026-10332-8","DOIUrl":"10.1007/s10532-026-10332-8","url":null,"abstract":"<div><p>Date fruit is a nutrient-dense and bioactive-rich fruit that has garnered attention for its dual role in athletic performance and sustainable nutrition. Naturally abundant in readily digestible carbohydrates, dietary fiber, essential minerals, vitamins, and polyphenolic compounds, dates provide rapid and sustained energy while supporting glycogen replenishment, oxidative stress mitigation, and metabolic regulation. These functional attributes make dates an ideal candidate for incorporation into sports nutrition products, such as energy bars and functional snacks, offering an alternative to refined carbohydrate supplements and synthetic formulations. The fortification of date-based products with plant proteins, cereals, nuts, seeds, or polyphenol-rich extracts further enhances protein quality, fiber content, antioxidant potential, and micronutrient density without compromising sustainability goals. Moreover, local sourcing, farm engagement, and community-supported agriculture provide educational, cultural, and ecological benefits, fostering mindful dietary behaviors and connecting athletes to their food systems. This review synthesizes recent advances on the chemical composition, functional properties, processing methods, and health-promoting effects of dates, highlighting their strategic potential to support both performance-driven sports nutrition and environmentally responsible diets. Future research should focus on quantifying the environmental impact of date-based functional foods, optimizing formulations for athlete recovery and performance, and translating these findings into practical dietary recommendations.</p></div>","PeriodicalId":486,"journal":{"name":"Biodegradation","volume":"37 4","pages":""},"PeriodicalIF":4.2,"publicationDate":"2026-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148358838","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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