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A cross-sectional study evaluating insulin injection techniques and the impact of instructions from various healthcare professionals on insulin users in the southern region of Saudi Arabia. 一项横断面研究评估胰岛素注射技术和各种医疗保健专业人员对沙特阿拉伯南部地区胰岛素使用者的指示的影响。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-12 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19394
Sirajudeen Shaik Alavudeen, Md Sayeed Akhtar, Sultan Mohammed Alshahrani, Vigneshwaran Easwaran, Asif Ansari Shaik Mohammad, Noohu Abdulla Khan, Abubakr Taha Hussein, Salem Salman Almujri, Abdulrahman Saeed Alshaiban, Khalid Orayj
{"title":"A cross-sectional study evaluating insulin injection techniques and the impact of instructions from various healthcare professionals on insulin users in the southern region of Saudi Arabia.","authors":"Sirajudeen Shaik Alavudeen, Md Sayeed Akhtar, Sultan Mohammed Alshahrani, Vigneshwaran Easwaran, Asif Ansari Shaik Mohammad, Noohu Abdulla Khan, Abubakr Taha Hussein, Salem Salman Almujri, Abdulrahman Saeed Alshaiban, Khalid Orayj","doi":"10.7717/peerj.19394","DOIUrl":"https://doi.org/10.7717/peerj.19394","url":null,"abstract":"<p><strong>Background: </strong>It is evident that proper use of the insulin injection technique (IIT) is important for optimizing the efficacy of the therapy. Despite the readily available manufacturers' instructions, healthcare professionals (HCPs) play a major role in educating patients. This study aims to investigate the knowledge, practices, and challenges faced by insulin users regarding IIT, as well as the impact of healthcare professionals' education on it.</p><p><strong>Methods: </strong>We conducted a questionnaire-based cross-sectional study using a validated online questionnaire to gather demographic and clinical data, as well as the participants' knowledge, practices, and challenges related to insulin therapy.</p><p><strong>Results: </strong>The mean age of the participants was 38.25 ± 15.58 (mean ± SD) years, with a nearly equal distribution of genders. Thirty-six percent of the participants educated by the diabetes educators demonstrated an appropriate IIT, such as storage, priming the insulin pen (54%), skin folding (63%), injection hold time, and \"use-by\" date. Furthermore, the absence of diabetes education specialist training increases the likelihood of errors, potentially leading to a loss of glycemic control. Patients reported carrying insulin when traveling as one of the major challenges (27.9%), followed by timely injections (23.7%), priming (21.6%), and adjusting the insulin dose (16.8%). Forgetfulness (47.7%), traveling or altering the regular routine (15.5%), missing a meal (15.5%), and being overly busy (13.5%) were among the reasons for missing the insulin dose; all of which are easily manageable with proper education.</p><p><strong>Conclusion: </strong>Consistent education and re-education are necessary for the insulin users to resolve the issues associated with suboptimal IIT. The inclusion of all stakeholders in insulin therapy, particularly the diabetes education specialists, is essential. Therefore, the Ministry of Health in Saudi Arabia should take the initiative to ensure that appropriately trained diabetes education specialists, pharmacists, nurses and other HCPs assess and follow up on patients.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19394"},"PeriodicalIF":2.3,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12080473/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144079294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Perceived fear and exercise difficulty in patients with migraine and their association with psychosocial factors: a cross-sectional study. 偏头痛患者的感知恐惧和运动困难及其与社会心理因素的关系:一项横断面研究。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-12 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19342
Álvaro Reina-Varona, Beatriz Madroñero-Miguel, Alba Paris-Alemany, Roy La Touche
{"title":"Perceived fear and exercise difficulty in patients with migraine and their association with psychosocial factors: a cross-sectional study.","authors":"Álvaro Reina-Varona, Beatriz Madroñero-Miguel, Alba Paris-Alemany, Roy La Touche","doi":"10.7717/peerj.19342","DOIUrl":"10.7717/peerj.19342","url":null,"abstract":"<p><strong>Purpose: </strong>Although pharmacological treatments for migraine have advanced, non-pharmacological approaches, such as exercise, offer additional benefits. However, many patients avoid physical activity due to fear of symptom exacerbation. This study aims to identify the most threatening and difficult exercises for patients with migraine and examine the relationship between exercise perceptions and factors such as physical activity levels, kinesiophobia, catastrophizing, and self-efficacy.</p><p><strong>Methods: </strong>This cross-sectional study explored the perceived fear and difficulty of nine exercises shown <i>via</i> video demonstrations, and their association with psychological variables in patients with migraine. Participants aged 18-65 with physician-diagnosed migraines completed self-report measures of physical activity, kinesiophobia, catastrophizing, fear-avoidance beliefs, headache impact, neck disability, and self-efficacy.</p><p><strong>Results: </strong>A total of 110 patients with migraine participated (88% women), with a mean age of 36 years. Chronic migraine was reported by 53% of participants. Significant differences in perceived fear and difficulty were observed across the nine exercises (<i>p</i> < 0.001), with jumping and spine extension rated as the most fear-inducing and difficult exercises, respectively. Beta regression models showed that the physical activity level, measured by the short form of the International Physical Activity Questionnaire (IPAQ-SF), was negatively associated with fear of jumping and difficulty of spine extension, whereas fear-avoidance beliefs were positively associated with both. A correlation analysis revealed a moderately significant negative association between the IPAQ-SF score and perceived fear of running.</p><p><strong>Conclusion: </strong>Jumping, running, and spine extension were perceived as the most aversive exercises. Perceived fear and difficulty levels were associated with physical activity levels and fear avoidance beliefs, emphasizing the need to assess these factors before implementing therapeutic exercise interventions.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19342"},"PeriodicalIF":2.3,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12085118/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144094637","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The acute effects of simulated hypoxic training at different altitudes on oxidative stress and muscle damage in elite long-distance runners. 不同海拔模拟缺氧训练对优秀长跑运动员氧化应激和肌肉损伤的急性影响。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-12 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19338
Mücahit Sarikaya, Beyza Öğe, Nuri Mert Embiyaoğlu, Muzaffer Selçuk, Vedat Çınar, Salih Öner, Yıldırım Gökhan Gencer, Mehdi Aslan, Mustafa Sencer Ulema, Yunus Emre Yarayan, Kadir Keskin, Nouf H Alkhamees, Bodor Bin Sheeha, Gerasimos V Grivas, Sameer Badri Al-Mhanna, Alexios Batrakoulis
{"title":"The acute effects of simulated hypoxic training at different altitudes on oxidative stress and muscle damage in elite long-distance runners.","authors":"Mücahit Sarikaya, Beyza Öğe, Nuri Mert Embiyaoğlu, Muzaffer Selçuk, Vedat Çınar, Salih Öner, Yıldırım Gökhan Gencer, Mehdi Aslan, Mustafa Sencer Ulema, Yunus Emre Yarayan, Kadir Keskin, Nouf H Alkhamees, Bodor Bin Sheeha, Gerasimos V Grivas, Sameer Badri Al-Mhanna, Alexios Batrakoulis","doi":"10.7717/peerj.19338","DOIUrl":"https://doi.org/10.7717/peerj.19338","url":null,"abstract":"<p><strong>Background: </strong>Understanding the impact of altitude on muscle damage and oxidative stress is essential for optimizing training and recovery strategies for athletes exposed to high-altitude conditions. Therefore, this study aimed to investigate the effects of acute exercise at different altitudes on oxidative stress and muscle damage.</p><p><strong>Methods: </strong>A total of twelve elite long-distance runners (mean age: 20.3 ± 1.5 years) from different branches participated in the study. The exercise protocol was the Bruce submaximal treadmill exercise test, which was conducted under three simulated hypoxic conditions (at 1,700 m, 2,450 m, and 3,200 m) and one normoxic condition (sea level). All measurements took place at the same time of the day. After the exercise protocol, 5 ml venous blood samples were taken from the participants, while heart rate and oxygen saturation were monitored at the 3rd, 6th, 9th, and 12th minutes during the exercise.</p><p><strong>Results: </strong>Significant altitude-dependent variations were observed in oxidative stress markers, with total oxidant status (TOS) (<i>p</i> = 0.017) and malondialdehyde (MDA) (<i>p</i> < 0.001) levels increasing at higher altitudes, while total antioxidant status (TAS) (<i>p</i> < 0.001) exhibited an elevation and oxidative stress index (OSI) (<i>p</i> < 0.001) demonstrated a decline as altitude increased. However, no significant difference was found in creatine kinase (CK, <i>p</i> = 0.059) levels. Additionally, there were significant differences in the oxygen saturation measurement taken at the 3rd (<i>p</i> < 0.001), 6th (<i>p</i> < 0.001), 9th (<i>p</i> < 0.001), and 12th (<i>p</i> < 0.001), minutes following the exercise session. There was no difference in the pulse measurement taken at the 3rd and 12th minutes, but a difference was observed at the 6th and 9th minutes post-exercise (<i>p</i> < 0.01).</p><p><strong>Conclusions: </strong>In conclusion, the study determined that endurance exercises performed under simulated normobaric hypoxia at different altitudes increased TAS and reduced OSI in elite long-distance runners. The increase in TAS and the reduction in OSI were more pronounced at higher altitudes, particularly at 2,450 m and 3,200 m, compared to sea level. These findings highlight the need for altitude-specific training and recovery strategies to minimize oxidative stress and muscle damage in athletes.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19338"},"PeriodicalIF":2.3,"publicationDate":"2025-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12080475/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144079377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Endophytic fungal community composition and function response to strawberry genotype and disease resistance. 草莓内生真菌群落组成及功能对基因型和抗病性的响应
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19383
Hongjun Yang, Xu Zhang, Rui Wang, Quanzhi Wang, Yuanhua Wang, Geng Zhang, Pengpeng Sun, Bei Lu, Meiling Wu, Zhiming Yan
{"title":"Endophytic fungal community composition and function response to strawberry genotype and disease resistance.","authors":"Hongjun Yang, Xu Zhang, Rui Wang, Quanzhi Wang, Yuanhua Wang, Geng Zhang, Pengpeng Sun, Bei Lu, Meiling Wu, Zhiming Yan","doi":"10.7717/peerj.19383","DOIUrl":"https://doi.org/10.7717/peerj.19383","url":null,"abstract":"<p><strong>Background: </strong>Utilizating the plant endophytic microbiomes to enhance pathogen resistance in crop production is an emerging alternative method to chemical pesticides. However, research on the composition and role of microbial communities related to perennial fruit plants, such as the strawberry, is still limited.</p><p><strong>Methods: </strong>We provide a comprehensive description of the composition and diversity of fungal communities in three niches (root, stem, and leaf) of three strawberry cultivars ('White Elves', 'Tokun', and 'Akihime') using internal transcribed spacer (ITS) rRNA amplicon sequencing and isolation culture methods. In addition, we also evaluated the disease tolerance ability of three strawberry cultivars to <i>Colletotrichum gloeosporioides</i> and <i>Alternaria alternata</i> through pathogenicity testing.</p><p><strong>Results: </strong>'White Elves' has stronger resistance to <i>Colletotrichum gloeosporioides</i>, and <i>Alternaria alternata</i>, followed by 'Tokun', while 'Akihime' has relatively weaker resistance to these pathogens. A total of 258 fungal strains were isolated from healthy strawberry plants and assigned to 34 fungal genera based on morphological and molecular characteristics analysis. Beneficial fungal genera such as <i>Trichoderma</i> and <i>Talaromyces</i> were more prevalent in 'White Elves', whereas common pathogenic fungi in strawberry, such as <i>Colletotrichum</i>, <i>Alternaria</i>, and <i>Fusarium</i>, were more prevalent in 'Akihime'. The composition and diversity of microbial communities vary among genotypes, and resistance to pathogens may play dominant roles in determining the microbial community structure. This study's results aid the biological control of strawberry fungal diseases and are useful for plant microbiome engineering in strawberry cultivation.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19383"},"PeriodicalIF":2.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12068253/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144026822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Past agricultural practices explain old field biodiversity and community composition in annually mowed grasslands: a case study of grazing and cultivation legacies in the northeastern United States. 过去的农业实践解释了旧田生物多样性和群落组成在每年修剪的草地:在美国东北部放牧和耕作遗产的案例研究。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19420
Alana M Danieu, Theresa W Ong
{"title":"Past agricultural practices explain old field biodiversity and community composition in annually mowed grasslands: a case study of grazing and cultivation legacies in the northeastern United States.","authors":"Alana M Danieu, Theresa W Ong","doi":"10.7717/peerj.19420","DOIUrl":"https://doi.org/10.7717/peerj.19420","url":null,"abstract":"<p><p>The northeastern United States experienced extensive deforestation for agriculture expansion and nearly equal passive reforestation following agriculture abandonment across the region over the past century. Old fields provide critical habitat as grasslands in the Northeast but tend to return to forests without intervention unless land managers implement disturbance regimes to maintain grassland states in the region. The relative importance of past and present disturbances in old field plant communities remains poorly resolved, partly because management varies widely in these systems. This motivated the present case study, which compares two proximate old fields that benefit from long and consistent management practices both before and after agriculture was abandoned in Hanover, NH. One field experienced agricultural disturbances associated with grazing while the other experienced cultivation each for 116 years followed by 50 years of the same annual mowing disturbances after agriculture was abandoned. Diversity was higher, communities more convergent across sub-plots, and woody individuals three times more numerous in the grazed site, while soil texture, type, elevation, and drainage had no discernible impact. The study helps to clarify the different legacies of grazing and cultivation on old field plant community diversity and composition. Despite undergoing 50 years of mowing following agriculture abandonment, the two old fields have divergent communities that are more consistent with the intensity of historic agricultural practices at each site than with any differences in measured soil characteristics. Understanding how agricultural legacies combine with contemporary disturbance regimes to shape successional communities may improve conservation and restoration efforts of grassland habitats and other ecosystems undergoing rapid environmental change, with implications for biodiversity, ecosystem services, and resilience.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19420"},"PeriodicalIF":2.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12068251/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143986672","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Taxonomic and ecologic transitions in Triassic marine bivalve communities. 三叠纪海洋双壳类群落的分类和生态变迁。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19237
Xue Miao, Jinnan Tong, Yunfei Huang, Shiyan Zhang, Peishan Li, Yiran Cao, Daoliang Chu, Wolfgang Kiessling
{"title":"Taxonomic and ecologic transitions in Triassic marine bivalve communities.","authors":"Xue Miao, Jinnan Tong, Yunfei Huang, Shiyan Zhang, Peishan Li, Yiran Cao, Daoliang Chu, Wolfgang Kiessling","doi":"10.7717/peerj.19237","DOIUrl":"https://doi.org/10.7717/peerj.19237","url":null,"abstract":"<p><p>The Permian-Triassic mass extinction was a pivotal event in shaping marine benthic ecosystems, leading to the rise of mollusks such as bivalves and gastropods as representatives of the Modern Evolutionary Fauna. However, the detailed changes in the ecological structure of marine benthic communities throughout the Triassic remain underexplored, particularly the interrelationship between taxonomic and ecological diversities. Here, we present a study on the Triassic bivalve communities from the typical shallow marine facies in South China to document regional evolutionary patterns and explore how these patterns connect to the global trends. Broad congruence in the timing of taxonomic and ecological changes was observed through the Triassic in South China. However, both the South China materials and global data revealed a decoupling of taxonomic and ecological diversities. Substantial variability in taxonomic richness was observed alongside stable ecological diversity. Taxonomic recovery occurred early in the Early Triassic, whereas ecological diversity fully recovered only in the Middle Triassic. The Carnian stage represents a significant transition in ecosystem structure, characterized by a shift towards infaunal dominance and the expansion of habitat depth.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19237"},"PeriodicalIF":2.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12068250/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143993491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Response surface optimization and flavor determination of fermentation processes of orange peel tea wine. 陈皮茶酒发酵工艺的响应面优化及风味测定。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19357
Yanbo Liu, Liu Mengge, Pengpeng Zhang, Wenxi Liu, Chong Yang, Jiayi Cui, Haideng Li, Chunmei Pan
{"title":"Response surface optimization and flavor determination of fermentation processes of orange peel tea wine.","authors":"Yanbo Liu, Liu Mengge, Pengpeng Zhang, Wenxi Liu, Chong Yang, Jiayi Cui, Haideng Li, Chunmei Pan","doi":"10.7717/peerj.19357","DOIUrl":"https://doi.org/10.7717/peerj.19357","url":null,"abstract":"<p><strong>Background: </strong>In this study, Xinyang Maojian tea and orange peel were used as raw materials to brew health wine with orange and tea flavors.</p><p><strong>Methods: </strong>Based on a single factor, the response surface method was used to optimize the fermentation of orange peel tea wine. Material volume ratio, yeast addition, fermentation temperature, fermentation time, and sucrose addition were used as the single-factor variables. The fermentation conditions of orange peel tea wine obtained by this method provide a theoretical basis for the development and utilization of tea wine and orange peel, which can promote the development of the tea wine market.</p><p><strong>Results: </strong>The results showed that the material volume ratio of orange peel juice to tea juice was 1:3, the yeast addition amount was 4.9%, the fermentation temperature was 29 °C, the fermentation time was 7 d, and the sucrose addition amount was 29%. The main change indexes in the fermentation process of orange peel tea wine were determined, and the results were consistent with the fermentation law of orange peel tea wine. The contents of total flavonoids and total phenols in orange peel tea wine were 0.48 and 2.32 mg/mL, respectively, and were obtained using spectrophotometry and the Folin-Ciocalteu (F-C) method. The scavenging rate of 2,2-diphenyl-1-picrylhydrazyl (DPPH) radicals was 90.8%, and the scavenging rate of ·OH radicals was 77.3%. A total of 26 flavor compounds were detected by gas chromatography-mass spectrometry (GC-MS). The main aroma compounds were ethanol, 3-methyl-1-butanol, 2-methyl-1-propanol, phenylethyl alcohol, acetic acid, n-hexadecanoic acid, 2,4-di-tert-butylphenol, and other compounds.</p><p><strong>Conclusion: </strong>The resulting orange peel tea wine was transparent, yellow in color, harmonious in flavor, and had certain health benefits, including strong antioxidant properties. The results of this study provide the theoretical basis for the research and development of tea wine.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19357"},"PeriodicalIF":2.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12068252/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144018759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Close neighbors, not intruders: investigating the role of tank bromeliads in shaping faunal microbiomes. 近邻,而不是入侵者:调查坦克凤梨在塑造动物微生物组中的作用。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19376
Rodolfo Martínez-Mota, Antonio Acini Vásquez-Aguilar, Dolores Hernández-Rodríguez, Emilio A Suárez-Domínguez, Thorsten Krömer
{"title":"Close neighbors, not intruders: investigating the role of tank bromeliads in shaping faunal microbiomes.","authors":"Rodolfo Martínez-Mota, Antonio Acini Vásquez-Aguilar, Dolores Hernández-Rodríguez, Emilio A Suárez-Domínguez, Thorsten Krömer","doi":"10.7717/peerj.19376","DOIUrl":"https://doi.org/10.7717/peerj.19376","url":null,"abstract":"<p><strong>Background: </strong>Tropical montane cloud forests contain high levels of epiphyte diversity. Epiphytic tank bromeliads play an important role in the functioning of these ecosystems and provide a microhabitat for many species of invertebrates. Microbial ecology theory suggests that the environment serves as a source of microbes for animals, but the contribution of this factor to the composition of an animal microbiome varies. In this study, we examined the extent to which tank bromeliads (<i>Tillandsia multicaulis</i>) serve as a source of microbes for two species of fly larvae in a cloud forest fragment in central Veracruz, Mexico.</p><p><strong>Methods: </strong>We used 16S rRNA sequencing to characterize the bacterial communities in the organic matter within bromeliad tanks and in the whole bodies (surface and gut) of larvae from two fly taxa (<i>Austrophorocera</i> sp., Tachinidae, and <i>Copestylum</i> sp., Syrphidae) that inhabit these bromeliads. To assess the contribution of bromeliads to the microbiome of the fly larvae, we conducted fast expectation-maximization microbial source tracking (FEAST) analysis.</p><p><strong>Results: </strong>The bacterial communities in bromeliad tanks were primarily composed of Pseudomonadota, Acidobacteriota, Bacteroidota, Verrucomicrobiota, and Spirochaetota. Similarly, communities of the fly larvae contained Pseudomonadota, Bacteroidota, Bacillota, and Actinomycetota. Bromeliad tanks exhibited the highest bacterial richness, followed by <i>Copestylum</i> and <i>Austrophorocera</i> larvae. Beta diversity analyses indicated that bacterial communities clustered by species. We found a modest contribution of bromeliads to the fly microbiome, with nearly 30% of the larvae microbiome traced to the organic matter deposited in the tanks.</p><p><strong>Conclusions: </strong>Our data suggest that the microbiome of flies, which inhabit tank bromeliads during their larval stage, is nourished to some extent by the bacterial communities present in the organic matter within the tank.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19376"},"PeriodicalIF":2.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12068248/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144047549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep learning-based fine-grained assessment of aneurysm wall characteristics using 4D-CT angiography. 基于深度学习的4D-CT血管造影动脉瘤壁特征细粒度评估。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19393
Teerawat Kumrai, Takuya Maekawa, Yixuan Chen, Yoshie Sugiyama, Masatoshi Takagaki, Shigeo Yamashiro, Katsumi Takizawa, Tsutomu Ichinose, Fujimaro Ishida, Haruhiko Kishima
{"title":"Deep learning-based fine-grained assessment of aneurysm wall characteristics using 4D-CT angiography.","authors":"Teerawat Kumrai, Takuya Maekawa, Yixuan Chen, Yoshie Sugiyama, Masatoshi Takagaki, Shigeo Yamashiro, Katsumi Takizawa, Tsutomu Ichinose, Fujimaro Ishida, Haruhiko Kishima","doi":"10.7717/peerj.19393","DOIUrl":"https://doi.org/10.7717/peerj.19393","url":null,"abstract":"<p><strong>Purpose: </strong>This study proposes a novel deep learning-based approach for aneurysm wall characteristics, including thin-walled (TW) and hyperplastic-remodeling (HR) regions.</p><p><strong>Materials and methods: </strong>We analyzed fifty-two unruptured cerebral aneurysms employing 4D-computed tomography angiography (4D-CTA) and intraoperative recordings. The TW and HR regions were identified in intraoperative images. The 3D trajectories of observation points on aneurysm walls were processed to compute a time series of 3D speed, acceleration, and smoothness of motion, aiming to evaluate the aneurysm wall characteristics. To facilitate point-level risk evaluation using the time-series data, we developed a convolutional neural network (CNN)-long- short-term memory (LSTM)-based regression model enriched with attention layers. In order to accommodate patient heterogeneity, a patient-independent feature extraction mechanism was introduced. Furthermore, unlabeled data were incorporated to enhance the data-intensive deep model.</p><p><strong>Results: </strong>The proposed method achieved an average diagnostic accuracy of 92%, significantly outperforming a simpler model lacking attention. These results underscore the significance of patient-independent feature extraction and the use of unlabeled data.</p><p><strong>Conclusion: </strong>This study demonstrates the efficacy of a fine-grained deep learning approach in predicting aneurysm wall characteristics using 4D-CTA. Notably, incorporating an attention-based network structure proved to be particularly effective, contributing to enhanced performance.</p>","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19393"},"PeriodicalIF":2.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12068254/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144023464","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In vitro feasibility of bovine and canine whole blood and commercially prepared canine packed red blood cells as a source of xenotransfusion in swine (Sus scrofa domestica). 牛、犬全血和市售犬填充红细胞作为猪异种输血来源的体外可行性。
IF 2.3 3区 生物学
PeerJ Pub Date : 2025-05-09 eCollection Date: 2025-01-01 DOI: 10.7717/peerj.19436
Victoria Diaz, Deanna M W Schaefer, Pierre-Yves Mulon, Xiaojuan Zhu, Joe Smith, Luca Giori, Chiara Hampton
{"title":"<i>In vitro</i> feasibility of bovine and canine whole blood and commercially prepared canine packed red blood cells as a source of xenotransfusion in swine (<i>Sus scrofa domestica</i>).","authors":"Victoria Diaz, Deanna M W Schaefer, Pierre-Yves Mulon, Xiaojuan Zhu, Joe Smith, Luca Giori, Chiara Hampton","doi":"10.7717/peerj.19436","DOIUrl":"https://doi.org/10.7717/peerj.19436","url":null,"abstract":"&lt;p&gt;&lt;p&gt;&lt;b&gt;Background:&lt;/b&gt; Since sourcing porcine blood donors for emergent transfusions to porcine patients is difficult, bovine or canine blood donors might represent alternative sources. The primary objective of this study was to determine the frequency of incompatible major (CMMa) and minor (CMMi) crossmatches by the standard saline agglutination tube method (SSA) between bovine whole blood (bWB) and whole blood from commercial pigs (pWB), and canine universal donor whole blood or commercially-prepared packed red blood cells (pRBCs) with whole blood from companion pigs. A secondary objective was determining the agreement between the reference method (SSA) and a quick slide (QS) method. &lt;b&gt;Methods:&lt;/b&gt; Blood was collected from 12 heifers, seven companion pigs, and eight commercial-cross pigs. A0 blood typing was performed for all porcine samples. Bovine blood was pooled into eight bags each containing three crossmatch-compatible individuals. Canine blood included whole blood from three canine blood donors (DEA 1.1, 5, 7 negative, and DEA 4 positive), and three bags each of DEA 1.1 negative and DEA 1.1 positive pRBCs. Crossmatch pairs were performed for bovine-to-porcine (&lt;i&gt;n&lt;/i&gt; = 64) and canine-to-porcine (&lt;i&gt;n&lt;/i&gt; = 63) samples. Incompatibility was defined as any agglutination or hemolysis on either CMMa and CMMi and reported separately. Complete incompatibility was defined as incompatibility of both CMMa and CMMi on the same pair. Kappa statistics tested the agreement between SSA and QS (significance at &lt;i&gt;P&lt;/i&gt; &lt; 0.05). &lt;b&gt;Results:&lt;/b&gt; For bWB and pWB, agglutination was observed in 9.4% of CMMa and 100% of CMMi &lt;i&gt;via&lt;/i&gt; SSA. Incompatibility on CMMa of bWB was more frequent with porcine blood type \"0\" (&lt;i&gt;P&lt;/i&gt; = 0.0107) than with type \"A\", whereas porcine blood group had no effect on CMMi results. All canine-to-porcine CMMa were incompatible with SSA and showed hemolysis severe enough to prevent evaluation of agglutination. The accuracy of QS at detecting incompatibilities was 87.5% in CMMa and 98.4% in CMMi in bovine-to-porcine samples. Agreement between SSA and QS methods was fair (&lt;i&gt;k&lt;/i&gt; = 0.36) for bovine-to-porcine CMMa but could not be calculated for CMMi due to lack of compatible matches. Because all canine-to-porcine CMMa were incompatible, the effects of the porcine blood group on incompatibility, accuracy of QS, and agreement between SSA and QS could not be calculated for CMMa. For CMMi, the agreement between tests was poor (&lt;i&gt;k&lt;/i&gt; = 0). &lt;b&gt;Discussion:&lt;/b&gt; When a xenotransfusion to a pig is indicated, bWB appears to be suitable based on &lt;i&gt;in vitro&lt;/i&gt; CMMa testing, whereas canine blood products are contraindicated for &lt;i&gt;in vivo&lt;/i&gt; administration to swine based on absolute CMMa incompatibility and incidence of hemolysis. &lt;i&gt;In vivo&lt;/i&gt; studies are needed to elucidate the clinical significance of CMMi incompatibilities. Based on these results, QS cannot be accurately used as a surrogate of SSA in pretransfusion testing for ","PeriodicalId":19799,"journal":{"name":"PeerJ","volume":"13 ","pages":"e19436"},"PeriodicalIF":2.3,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12068249/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143973345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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