Molecular Plant最新文献

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Design of future climate smart crops by engineering heat stress-responsive gene expression. 焦点:通过工程热应激反应基因表达设计未来气候智能型作物。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-03-22 DOI: 10.1016/j.molp.2025.03.012
Alisdair R Fernie, Mustafa Bulut
{"title":"Design of future climate smart crops by engineering heat stress-responsive gene expression.","authors":"Alisdair R Fernie, Mustafa Bulut","doi":"10.1016/j.molp.2025.03.012","DOIUrl":"10.1016/j.molp.2025.03.012","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"738-740"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143692707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
International research initiative on genomics-guided sugarcane breeding. 基因组学指导甘蔗育种国际研究倡议。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-05-02 DOI: 10.1016/j.molp.2025.04.005
Xingtan Zhang, Jungang Wang, Noor-Ul-Áin, Youxiong Que, Jisen Zhang, Javeria Abid, Peifang Zhao, Yuebin Zhang, Jishan Lin, Li-Yu Chen, Yixue Bao, Robert Henry, Sithichoke Tangphatsornruang, Qinnan Wang, Dongliang Huang, Jian Ye, Muqing Zhang, Ming Luo, Mike Butterfield, Ren Wang, Ray Ming
{"title":"International research initiative on genomics-guided sugarcane breeding.","authors":"Xingtan Zhang, Jungang Wang, Noor-Ul-Áin, Youxiong Que, Jisen Zhang, Javeria Abid, Peifang Zhao, Yuebin Zhang, Jishan Lin, Li-Yu Chen, Yixue Bao, Robert Henry, Sithichoke Tangphatsornruang, Qinnan Wang, Dongliang Huang, Jian Ye, Muqing Zhang, Ming Luo, Mike Butterfield, Ren Wang, Ray Ming","doi":"10.1016/j.molp.2025.04.005","DOIUrl":"https://doi.org/10.1016/j.molp.2025.04.005","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":"18 5","pages":"908"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143971774","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Natural variations in the promoter of ZmDeSI2 encoding a deSUMOylating isopeptidase controls kernel methionine content in maize. 编码脱硫异肽酶的ZmDeSI2启动子的自然变异控制玉米籽粒蛋氨酸含量。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-04-22 DOI: 10.1016/j.molp.2025.04.008
Xin Lu, Yuhong Lei, Zhennan Xu, Zixiang Cheng, Meng Liu, Yuxin Tai, Xiaohua Han, Zhuanfang Hao, Mingshun Li, Degui Zhang, Hongjun Yong, Jienan Han, Zhenhua Wang, Wen-Xue Li, Jianfeng Weng, Zhiqiang Zhou, Xinhai Li
{"title":"Natural variations in the promoter of ZmDeSI2 encoding a deSUMOylating isopeptidase controls kernel methionine content in maize.","authors":"Xin Lu, Yuhong Lei, Zhennan Xu, Zixiang Cheng, Meng Liu, Yuxin Tai, Xiaohua Han, Zhuanfang Hao, Mingshun Li, Degui Zhang, Hongjun Yong, Jienan Han, Zhenhua Wang, Wen-Xue Li, Jianfeng Weng, Zhiqiang Zhou, Xinhai Li","doi":"10.1016/j.molp.2025.04.008","DOIUrl":"https://doi.org/10.1016/j.molp.2025.04.008","url":null,"abstract":"<p><p>Improving the methionine (Met) content in maize kernels is of key importance to the animal feed industry; however, the genetic and molecular mechanisms governing maize kernel Met content remain largely unexplored. In this study, we leveraged a panel consisting of 348 diverse inbred maize lines to explore the genetic and molecular mechanisms that control kernel Met levels. A genome-wide association study followed by transcriptomic analysis identified the deSUMOylating isopeptidase gene ZmDeSI2. Further biochemical experiments revealed that ZmDeSI2 directly reduces the SUMOylation and accumulation of the sulfite reductase ZmSIR, thereby repressing Met accumulation. Natural variants in the ZmDeSI2 promoter region were found to serve as key determinants of the expression of this gene, predominantly due to the absence or presence of a ZmWRKY105 transcription factor binding site. The elite ZmDeSI2<sup>Hap2</sup> haplotype without this binding site in the ZmDeSI2 promoter was associated with a 1.36-fold increase in Met levels in the kernels of modified near-isogenic lines generated through marker-assisted breeding. Taken together, these results provide new insights into the molecular processes that control Met biosynthesis, highlighting an elite natural variant suitable for application in maize breeding for Met biofortification.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":"18 5","pages":"872-891"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144028651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Shaping future sugarcane: Ideal plant architecture and breeding strategies. 塑造未来的甘蔗:理想的植物结构和育种策略。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-04-09 DOI: 10.1016/j.molp.2025.04.004
Qianqian Li, Xiaoguang Song, Xiangbing Meng, Jie Zhang, Muqing Zhang, Li-Yu Chen, Jiayang Li, Bing Wang
{"title":"Shaping future sugarcane: Ideal plant architecture and breeding strategies.","authors":"Qianqian Li, Xiaoguang Song, Xiangbing Meng, Jie Zhang, Muqing Zhang, Li-Yu Chen, Jiayang Li, Bing Wang","doi":"10.1016/j.molp.2025.04.004","DOIUrl":"https://doi.org/10.1016/j.molp.2025.04.004","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":"18 5","pages":"725-728"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143994864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Woody plant cell walls: Fundamentals and utilization. 木本植物细胞壁:基本原理与利用。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-05-02 DOI: 10.1016/j.molp.2025.04.006
Wei Li, Ying-Chung Jimmy Lin, Ying-Lan Chen, Chenguang Zhou, Shuang Li, Nette De Ridder, Dyoni M Oliveira, Lanjun Zhang, Baocai Zhang, Jack P Wang, Changzheng Xu, Xiaokang Fu, Keming Luo, Ai-Min Wu, Taku Demura, Meng-Zhu Lu, Yihua Zhou, Laigeng Li, Toshiaki Umezawa, Wout Boerjan, Vincent L Chiang
{"title":"Woody plant cell walls: Fundamentals and utilization.","authors":"Wei Li, Ying-Chung Jimmy Lin, Ying-Lan Chen, Chenguang Zhou, Shuang Li, Nette De Ridder, Dyoni M Oliveira, Lanjun Zhang, Baocai Zhang, Jack P Wang, Changzheng Xu, Xiaokang Fu, Keming Luo, Ai-Min Wu, Taku Demura, Meng-Zhu Lu, Yihua Zhou, Laigeng Li, Toshiaki Umezawa, Wout Boerjan, Vincent L Chiang","doi":"10.1016/j.molp.2025.04.006","DOIUrl":"https://doi.org/10.1016/j.molp.2025.04.006","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":"18 5","pages":"909-910"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144002415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Near-complete assembly and comprehensive annotation of the wheat Chinese Spring genome. 中国小麦春季基因组的近完整组装与综合注释。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-02-13 DOI: 10.1016/j.molp.2025.02.002
Zijian Wang, Lingfeng Miao, Kaiwen Tan, Weilong Guo, Beibei Xin, Rudi Appels, Jizeng Jia, Jinsheng Lai, Fei Lu, Zhongfu Ni, Xiangdong Fu, Qixin Sun, Jian Chen
{"title":"Near-complete assembly and comprehensive annotation of the wheat Chinese Spring genome.","authors":"Zijian Wang, Lingfeng Miao, Kaiwen Tan, Weilong Guo, Beibei Xin, Rudi Appels, Jizeng Jia, Jinsheng Lai, Fei Lu, Zhongfu Ni, Xiangdong Fu, Qixin Sun, Jian Chen","doi":"10.1016/j.molp.2025.02.002","DOIUrl":"10.1016/j.molp.2025.02.002","url":null,"abstract":"<p><p>A complete reference genome assembly is crucial for biological research and genetic improvement. Owing to its large size and highly repetitive nature, there are numerous gaps in the globally used wheat Chinese Spring (CS) genome assembly. In this study, we generated a 14.46 Gb near-complete assembly of the CS genome, with a contig N50 of over 266 Mb and an overall base accuracy of 99.9963%. Among the 290 gaps that remained (26, 257, and 7 gaps from the A, B, and D subgenomes, respectively), 278 were extremely high-copy tandem repeats, whereas the remaining 12 were transposable-element-associated gaps. Four chromosome assemblies were completely gap-free, including chr1D, chr3D, chr4D, and chr5D. Extensive annotation of the near-complete genome revealed 151 405 high-confidence genes, of which 59 180 were newly annotated, including 7602 newly assembled genes. Except for the centromere of chr1B, which has a gap associated with superlong GAA repeat arrays, the centromeric sequences of all of the remaining 20 chromosomes were completely assembled. Our near-complete assembly revealed that the extent of tandem repeats, such as simple-sequence repeats, was highly uneven among different subgenomes. Similarly, the repeat compositions of the centromeres also varied among the three subgenomes. With the genome sequences of all six types of seed storage proteins (SSPs) fully assembled, the expression of ω-gliadin was found to be contributed entirely by the B subgenome, whereas the expression of the other five types of SSPs was most abundant from the D subgenome. The near-complete CS genome will serve as a valuable resource for genomic and functional genomic research and breeding of wheat as well as its related species.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"892-907"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143414656","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The dual-targeted transcription factor BAI1 orchestrates nuclear and plastid gene transcription in land plants. 双靶转录因子BAI1在陆地植物中调控核和质体基因的转录。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-03-31 DOI: 10.1016/j.molp.2025.03.018
Jing Qin, Yelin Shan, Hao Liu, Zhangzhi Xue, Yike Xie, Guoxin Yuan, Yiming Zou, Xiaonuan Hao, Yunpeng Zhu, Xuan Shen, Meng Li, Xu Wang, Puyuan Liu, Jinxiu Xu, Yuhua Wang, Peng Zhao, Yuan Chen, Yi Zhu, Min Xu, Ming Yue, Aigen Fu, Weiguo Zhang, Beibei Li
{"title":"The dual-targeted transcription factor BAI1 orchestrates nuclear and plastid gene transcription in land plants.","authors":"Jing Qin, Yelin Shan, Hao Liu, Zhangzhi Xue, Yike Xie, Guoxin Yuan, Yiming Zou, Xiaonuan Hao, Yunpeng Zhu, Xuan Shen, Meng Li, Xu Wang, Puyuan Liu, Jinxiu Xu, Yuhua Wang, Peng Zhao, Yuan Chen, Yi Zhu, Min Xu, Ming Yue, Aigen Fu, Weiguo Zhang, Beibei Li","doi":"10.1016/j.molp.2025.03.018","DOIUrl":"10.1016/j.molp.2025.03.018","url":null,"abstract":"<p><p>Coordinated gene transcription in plastids and nuclei is necessary for the photosynthetic apparatus assembly during chloroplast biogenesis. Despite the identification of several transcription factors regulating nuclear-encoded photosynthetic gene transcription, transcription factors regulating plastid gene transcription are barely reported. Here, we report that BAI1 (\"albino\" in Chinese), a nucleus-plastid dual-targeted C2H2-type zinc-finger transcription factor in Arabidopsis, positively regulates and tunes the transcription of both nuclear and plastid genes. Knockout of BAI1 blocks chloroplast formation, producing albino seedlings and lethality. In plastids, BAI1 is a newly identified functional component of the pTAC (transcriptionally active chromosome complex), which interacts with another pTAC component, pTAC12/PAP5/HMR, to allow the effective assembly of plastid-encoded RNA polymerase (PEP) complexes. The transcript levels of PEP-dependent genes were reduced in the bai1 mutant. In contrast, the accumulation of nuclear-encoded RNA polymerase (NEP)-dependent transcripts was increased, suggesting that BAI1 is critical in maintaining PEP activity. BAI1 directly binds to the promoter regions of nuclear genes RbcSs and a plastid gene RbcL to activate their expression for RubisCO assembly. AtBAI1 homologs TaBAI1, GmBAI1a, and GmBAI1b from monocots and dicots can fully complement the defects of the Arabidopsis bai1 mutant. In contrast, Physcomitrium patens BAI1 (PpBAI1) only partially complements the bai1 mutant. Phylogenetic analysis of BAI1 and HMR uncovered that both components arose from late-diverging streptophyte algae, following a conserved evolutionary path during terrestrialization. In summary, this work unveils a BAI1-mediated transcription regulatory mechanism synchronizing the transcription of nuclear and plastid genes, necessary for hybrid photosynthetic complex assembly. This could be an intrinsic feature facilitating plant terrestrialization.</p>","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"833-852"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143764449","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Propagation of plant immunity via interactions between PRIMER and bystander cells. 通过 PRIMER 和旁观者细胞之间的相互作用传播植物免疫力。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-03-14 DOI: 10.1016/j.molp.2025.03.009
Hongyuan Zheng, Yu Wang, Xuemin Zhou, Daowen Wang, Shi Xiao, Zheng Qing Fu
{"title":"Propagation of plant immunity via interactions between PRIMER and bystander cells.","authors":"Hongyuan Zheng, Yu Wang, Xuemin Zhou, Daowen Wang, Shi Xiao, Zheng Qing Fu","doi":"10.1016/j.molp.2025.03.009","DOIUrl":"10.1016/j.molp.2025.03.009","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"732-734"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143634240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery of three cytochrome P450 monooxygenase prenyl cyclases that catalyze the final step of glyceollin biosynthesis in soybean. 大豆中催化甘油合成最后一步的细胞色素P450单加氧酶戊烯基环化酶的发现。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-01-31 DOI: 10.1016/j.molp.2025.01.022
Praveen Khatri, Kuflom Kuflu, Tim McDowell, Jie Lin, Nikola Kovinich, Sangeeta Dhaubhadel
{"title":"Discovery of three cytochrome P450 monooxygenase prenyl cyclases that catalyze the final step of glyceollin biosynthesis in soybean.","authors":"Praveen Khatri, Kuflom Kuflu, Tim McDowell, Jie Lin, Nikola Kovinich, Sangeeta Dhaubhadel","doi":"10.1016/j.molp.2025.01.022","DOIUrl":"10.1016/j.molp.2025.01.022","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"721-724"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143075132","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-plant NLR is able to recognize effectors from a wide range of adapted and non-adapted pathogens. 单株植物 NLR 能够识别来自各种适应性和非适应性病原体的效应物。
IF 17.1 1区 生物学
Molecular Plant Pub Date : 2025-05-05 Epub Date: 2025-03-13 DOI: 10.1016/j.molp.2025.03.008
Soohyun Oh, Doil Choi
{"title":"Single-plant NLR is able to recognize effectors from a wide range of adapted and non-adapted pathogens.","authors":"Soohyun Oh, Doil Choi","doi":"10.1016/j.molp.2025.03.008","DOIUrl":"10.1016/j.molp.2025.03.008","url":null,"abstract":"","PeriodicalId":19012,"journal":{"name":"Molecular Plant","volume":" ","pages":"729-731"},"PeriodicalIF":17.1,"publicationDate":"2025-05-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143634241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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