BiopolymersPub Date : 2024-04-05DOI: 10.1002/bip.23579
Sema Samatya Yilmaz, Ayse Aytac
{"title":"Antibacterial wound dressing with cross-linked electrospun surface from reduced graphene oxide doped polyvinyl alcohol/sodium caseinate blends","authors":"Sema Samatya Yilmaz, Ayse Aytac","doi":"10.1002/bip.23579","DOIUrl":"10.1002/bip.23579","url":null,"abstract":"<p>In this study, a new biomaterial with polyvinyl alcohol (PVA)/sodium caseinate (SodCa)/reduced graphene oxide (rGO) structure was developed. Antibacterial effective nanofibers were successfully produced by electrospinning method from 1%, 3%, 5%, and 7% rGO added PVA/SodCa (60:40, w:w) solution mixtures prepared for use as modern wound dressings. To create a usage area, especially in exuding wounds, hydrophilic PVA/SodCa/rGO electrospun mats were cross-linked by dipping them in a glutaraldehyde (GLA) bath. The surface micrographs of all nanofibers were homogeneous and smooth. rGO-doped biomaterials were obtained as thin nanofibers in the range of 301–348 nm. Nanofibers, which were completely soluble in water, after cross-linking preserved their existence in the range of 87%–81% at the end of the 24th hour in distilled water. It was reported that these biomaterials that persist in an aqueous environment show swelling behavior in the range of 275%–608%. The porosity of uncross-linked pure PVA/SodCa nanofibers increased by 46.75% after cross-linking. Moreover, the tensile strength of cross-linked PVA/SodCa electrospun mats increased in the presence of rGO. Provided that wound dressing is done every 24 h with 3% rGO-doped PVA/SodCa nanofiber and provided that wound dressing is done every 48 h with 5% rGO-doped PVA/SodCa nanofiber showed antibacterial activity against <i>S. aureus</i> as 99.38% and 99.55%, respectively.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 3","pages":""},"PeriodicalIF":2.9,"publicationDate":"2024-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140582657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Polymers and their engineered analogues for ocular drug delivery: Enhancing therapeutic precision","authors":"Arpon Biswas, Shivansh Kumar, Abhijit Deb Choudhury, Amol Chhatrapati Bisen, Sachin Nashik Sanap, Sristi Agrawal, Anjali Mishra, Sarvesh Kumar Verma, Mukesh Kumar, Rabi Sankar Bhatta","doi":"10.1002/bip.23578","DOIUrl":"10.1002/bip.23578","url":null,"abstract":"<p>Ocular drug delivery is constrained by anatomical and physiological barriers, necessitating innovative solutions for effective therapy. Natural polymers like hyaluronic acid, chitosan, and gelatin, alongside synthetic counterparts such as PLGA and PEG, have gained prominence for their biocompatibility and controlled release profiles. Recent strides in polymer conjugation strategies have enabled targeted delivery through ligand integration, facilitating tissue specificity and cellular uptake. This versatility accommodates combined drug delivery, addressing diverse anterior (e.g., glaucoma, dry eye) and posterior segment (e.g., macular degeneration, diabetic retinopathy) afflictions. The review encompasses an in-depth exploration of each natural and synthetic polymer, detailing their individual advantages and disadvantages for ocular drug delivery. By transcending ocular barriers and refining therapeutic precision, these innovations promise to reshape the management of anterior and posterior segment eye diseases.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 4","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140582789","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BiopolymersPub Date : 2024-03-25DOI: 10.1002/bip.23577
Ashish Jagtap, Syed G. Dastager
{"title":"Bacterial nanocellulose: A versatile biopolymer production using a cost-effective wooden disc based rotary reactor","authors":"Ashish Jagtap, Syed G. Dastager","doi":"10.1002/bip.23577","DOIUrl":"10.1002/bip.23577","url":null,"abstract":"<p>Bacterial nanocellulose (BNC) has various unique qualities, including high mechanical strength, crystallinity, and high water-holding capacity, which makes it appropriate for a wide range of industrial applications. But its lower yield coupled with its high production cost creates a barrier to its usage. In this study, we have demonstrated the better yield of BNC from an indigenous strain <i>Komagataeibacter rhaeticus</i> MCC-0157 using a rotary disc bioreactor (RDB) having a wooden disc. The RDB was optimized based on the type of disc material, distance between the disc, and rotation speed to get the highest yield of 13.0 g/L dry material using Hestrin–Schramm (H–S) medium. Further, the bioreactor was compared for the BNC production using reported medium, which is used for static condition; the RDB showed up to fivefold increase in comparison with the static condition reported. <i>Komagataeibacter rhaeticus</i> MCC-0157 was previously reported to be one of the highest BNC producing stains, with 8.37 g/L of dry yield in static condition in 15 days incubation. The designed RDB demonstrated 13.0 g/L dry yield of BNC in just 5 days. Other characteristics of BNC remain same as compared with static BNC production, although the difference in the crystallinity index was observed in RDB (84.44%) in comparison with static (89.74%). For the first time, wooden disc was used for rotary bioreactor approach, which demonstrated higher yield of BNC in lesser time and can be further used for sustainable production of BNC at the industrial level.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 4","pages":""},"PeriodicalIF":3.2,"publicationDate":"2024-03-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140206317","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BiopolymersPub Date : 2024-03-21DOI: 10.1002/bip.23576
Michelle A. Lay, Valery F. Thompson, Ajibola D. Adelakun, Jacob C. Schwartz
{"title":"Ewing Sarcoma Related protein 1 recognizes R-loops by binding DNA forks","authors":"Michelle A. Lay, Valery F. Thompson, Ajibola D. Adelakun, Jacob C. Schwartz","doi":"10.1002/bip.23576","DOIUrl":"10.1002/bip.23576","url":null,"abstract":"<p>EWSR1 (Ewing Sarcoma Related protein 1) is an RNA binding protein that is ubiquitously expressed across cell lines and involved in multiple parts of RNA processing, such as transcription, splicing, and mRNA transport. EWSR1 has also been implicated in cellular mechanisms to control formation of R-loops, a three-stranded nucleic acid structure consisting of a DNA:RNA hybrid and a displaced single-stranded DNA strand. Unscheduled R-loops result in genomic and transcription stress. Loss of function of EWSR1 functions commonly found in Ewing Sarcoma correlates with high abundance of R-loops. In this study, we investigated the mechanism for EWSR1 to recognize an R-loop structure specifically. Using electrophoretic mobility shift assays (EMSA), we detected the high affinity binding of EWSR1 to substrates representing components found in R-loops. EWSR1 specificity could be isolated to the DNA fork region, which transitions between double- and single-stranded DNA. Our data suggests that the Zinc-finger domain (ZnF) with flanking arginine and glycine rich (RGG) domains provide high affinity binding, while the RNA recognition motif (RRM) with its RGG domains offer improved specificity. This model offers a rational for EWSR1 specificity to encompass a wide range in contexts due to the DNA forks always found with R-loops.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 3","pages":""},"PeriodicalIF":2.9,"publicationDate":"2024-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bip.23576","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140179288","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BiopolymersPub Date : 2024-03-20DOI: 10.1002/bip.23573
Yiyao He, Dawei He, Lin Fan, Song Ren, Lin Wang, Jiang Sun
{"title":"Application of hydrogel microneedles in the oral cavity","authors":"Yiyao He, Dawei He, Lin Fan, Song Ren, Lin Wang, Jiang Sun","doi":"10.1002/bip.23573","DOIUrl":"10.1002/bip.23573","url":null,"abstract":"<p>Microneedles are a transdermal drug delivery system in which the needle punctures the epithelium to deliver the drug directly to deep tissues, thus avoiding the influence of the first-pass effect of the gastrointestinal tract and minimizing the likelihood of pain induction. Hydrogel microneedles are microneedles prepared from hydrogels that have good biocompatibility, controllable mechanical properties, and controllable drug release and can be modified to achieve environmental control of drug release in vivo. The large epithelial tissue in the oral cavity is an ideal site for drug delivery via microneedles. Hydrogel microneedles can overcome mucosal hindrances to delivering drugs to deep tissues; this prevents humidity and a highly dynamic environment in the oral cavity from influencing the efficacy of the drugs and enables them to obtain better therapeutic effects. This article analyzes the materials and advantages of common hydrogel microneedles and reviews the application of hydrogel microneedles in the oral cavity.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 3","pages":""},"PeriodicalIF":2.9,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140179287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"In vitro and in vivo investigation of Argiope bruennichi spider silk-based novel biomaterial for medical use","authors":"Seçil Karahisar Turan, Aysun Kılıç Süloğlu, Semra İde, Tuncay Türkeş, Nurhayat Barlas","doi":"10.1002/bip.23572","DOIUrl":"10.1002/bip.23572","url":null,"abstract":"<p>As a natural and biocompatible material with high strength and flexibility, spider silk is frequently used in biomedical studies. In this study, the availability of <i>Argiope bruennichi</i> spider silk as a surgical suture material was investigated. The effects of spider silk-based and commercial sutures, with and without <i>Aloe vera</i> coating, on wound healing were evaluated by a rat dorsal skin flap model, postoperatively (7th and 14th days). Biochemical, hematological, histological, immunohistochemical, small angle x-ray scattering (SAXS) analyses and mechanical tests were performed. <i>A</i>. <i>bruennichi</i> silk did not show any cytotoxic effect on the L929 cell line according to MTT and LDH assays, in vitro. The silk materials did not cause any allergic reaction, infection, or systemic effect in rats according to hematological and biochemical analyses. <i>A</i>. <i>bruennichi</i> spider silk group showed a similar healing response to commercial sutures. SAXS analysis showed that the 14th-day applications of <i>A</i>. <i>bruennichi</i> spider silk and <i>A</i>. <i>vera</i> coated commercial suture groups have comparable structural results with control group. In conclusion, <i>A</i>. <i>bruennichi</i> spider silk is biocompatible in line with the parameters examined and shows a healing response similar to the commercial sutures commonly used in the skin.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 3","pages":""},"PeriodicalIF":2.9,"publicationDate":"2024-03-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140139799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BiopolymersPub Date : 2024-03-12DOI: 10.1002/bip.23574
Hendryk Würfel, Annett Pfeifer, Thomas Heinze
{"title":"Efficient heterogeneous synthesis of nucleophilic carboxymethyl hydrazides of polysaccharides","authors":"Hendryk Würfel, Annett Pfeifer, Thomas Heinze","doi":"10.1002/bip.23574","DOIUrl":"10.1002/bip.23574","url":null,"abstract":"<p>Nucleophilic moieties in polysaccharides (PS) with distinct higher reactivity compared with the hydroxy group are interesting for sustainable applications in chemistry, medicine, and pharmacy. An efficient heterogeneous method for the formation of such nucleophilic PS is described. Employing alcohols as slurry medium, protonated carboxymethyl (CM) PS and hydrazine hydrate are allowed to react at elevated temperatures. The CM derivatives of starch and pullulan can be transformed almost quantitatively to the corresponding hydrazides. The reaction is less efficient for CM dextrans and CM xylans. As slurry media, 2-propanol and ethanol were probed, and the results are compared with a homogeneous procedure performed in water. Overall, the heterogeneous procedure is superior compared with the homogeneous route. 2-Propanol is the best slurry medium investigated yielding PS hydrazides with the highest nitrogen content.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 3","pages":""},"PeriodicalIF":2.9,"publicationDate":"2024-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140100988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BiopolymersPub Date : 2024-03-11DOI: 10.1002/bip.23575
Hae Sook Park, Joo Yun Lee, Young Kee Kang
{"title":"Exploring helix structures of γ-peptides based on 2-(aminomethyl)cyclopentanecarboxylic acid","authors":"Hae Sook Park, Joo Yun Lee, Young Kee Kang","doi":"10.1002/bip.23575","DOIUrl":"10.1002/bip.23575","url":null,"abstract":"<p>Conformational search and density functional theory calculations were performed to explore the preferences of helical structures for chiro-specific oligo-γ-peptides of 2-(aminomethyl)cyclopentanecarboxylic acid (γAmc<sub>5</sub>) with a cyclopentyl constraint on the C<sup>α</sup>–C<sup>β</sup> bond in solution. The dimer and tetramer of γAmc<sub>5</sub> (<b>1</b>) with homochiral (1<i>S</i>, 2<i>S</i>) configurations exhibited a strong preference for the 9-membered helix foldamer in solution, except for the tetramer in water. However, the oligomers of γAmc<sub>5</sub> (<b>1</b>) longer than tetramer preferentially adopted a right-handed (<i>P</i>)-2.6<sub>14</sub>-helix (H<sub>1</sub>-14) as the peptide sequence becomes longer and as solvent polarity increases. The high stabilities for H<sub>1</sub>-14 foldamers of γAmc<sub>5</sub> (<b>1</b>) in solution were ascribed to the favored solvation free energies. The calculated mean backbone torsion angles for H<sub>1</sub>-14 helix foldamers of γAmc<sub>5</sub> (<b>1</b>) were similar to those calculated for oligomers of other γ-residues with cyclopentane or cyclohexane rings. However, the substitution of cyclopentane constraints on the C<sup>α</sup>−C<sup>β</sup> bond of the γAmc<sub>5</sub> (<b>1</b>) residue resulted in different conformational preferences and/or handedness of helix foldamers. In particular, the pyrrolidine-substituted analogs of the H<sub>1</sub>-14 foldamers of γAmc<sub>5</sub> (<b>1</b>) with adjacent amine diads substituted at a proximal distance are expected to be potential catalysts for the crossed aldol condensation in nonpolar and polar solvents.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 3","pages":""},"PeriodicalIF":2.9,"publicationDate":"2024-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bip.23575","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140093343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BiopolymersPub Date : 2024-02-22DOI: 10.1002/bip.23571
Margarita Reit, Jan-Christoph Zarges, Hans-Peter Heim
{"title":"Correlation between the activation energy of PLA respectively PLA/starch composites and mechanical properties with regard to differ accelerated aging conditions","authors":"Margarita Reit, Jan-Christoph Zarges, Hans-Peter Heim","doi":"10.1002/bip.23571","DOIUrl":"10.1002/bip.23571","url":null,"abstract":"<p>Within this research semi-crystalline polylactide and composites with 50 wt.% native potato starch were compounded and injection molded. The material was mechanically characterized by tensile, three-point bending, and Charpy impact tests. These tests were carried out in the freshly molded state and after 332 and 792 h of storage at accelerated temperature or humidity. The respective activation energy was calculated by applying the Flynn-Wall-Ozawa method. The focus of the study was to investigate the correlation between the activation energy and the related mechanical and thermal properties. The results showed that the addition of native potato starch as a filler prevents the decrease in activation energy over the course of the experiments. Thus, the PLA/starch composite is more resistant to the two aging conditions than the pure PLA. When considering the mechanical properties, the pure PLA showed a large deviation of results compared to the initial value in a range of +63.88% to −33.96% with regard to the respective aging conditions, whereas the PLA/starch composite properties nearly always remained at the initial values. Through the investigation of the mechanical and thermal properties, it was shown that the steady activation energies are consistent with the mechanical properties, as these have shown only a small deviation of the mechanical properties during the duration of experiments for the PLA/starch composite.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 3","pages":""},"PeriodicalIF":2.9,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bip.23571","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139929866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BiopolymersPub Date : 2023-12-05DOI: 10.1002/bip.23570
Sandra Byju, Asem Hassan, Paul C. Whitford
{"title":"The energy landscape of the ribosome","authors":"Sandra Byju, Asem Hassan, Paul C. Whitford","doi":"10.1002/bip.23570","DOIUrl":"10.1002/bip.23570","url":null,"abstract":"<p>The ribosome is a prototypical assembly that can be used to establish general principles and techniques for the study of biological molecular machines. Motivated by the fact that the dynamics of every biomolecule is governed by an underlying energy landscape, there has been great interest to understand and quantify ribosome energetics. In the present review, we will focus on theoretical and computational strategies for probing the interactions that shape the energy landscape of the ribosome, with an emphasis on more recent studies of the elongation cycle. These efforts include the application of quantum mechanical methods for describing chemical kinetics, as well as classical descriptions to characterize slower (microsecond to millisecond) large-scale (10–100 Å) rearrangements, where motion is described in terms of diffusion across an energy landscape. Together, these studies provide broad insights into the factors that control a diverse range of dynamical processes in this assembly.</p>","PeriodicalId":8866,"journal":{"name":"Biopolymers","volume":"115 2","pages":""},"PeriodicalIF":2.9,"publicationDate":"2023-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bip.23570","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138486604","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}