BacteriophagePub Date : 2013-10-01DOI: 10.4161/bact.27011
A. Cuervo, M. Chagoyen, Mar Pulido-Cid, A. Camacho, J. Carrascosa
{"title":"Structural characterization of T7 tail machinery reveals a conserved tubular structure among other Podoviridae family members and suggests a common mechanism for DNA delivery","authors":"A. Cuervo, M. Chagoyen, Mar Pulido-Cid, A. Camacho, J. Carrascosa","doi":"10.4161/bact.27011","DOIUrl":"https://doi.org/10.4161/bact.27011","url":null,"abstract":"Bacteriophage tail complexes play an essential role in host recognition and DNA delivery during virus infection. These molecular machines are composed of a tubular structure surrounded by fibers, with a central channel that acts as a conduit for DNA ejection. The T7 tail complex is formed by four proteins: connector (gp8), gatekeeper (gp11), nozzle (gp12), and fibers (gp17). Previous biochemical and structural studies allowed definition of the stoichiometry and order of assembly of these proteins. Here we compared the tail complex from other Podoviridae phages that infect bacteria with Gram− type envelopes (K1E, P-SSP7, and ε15), and found strong similarities with the T7 nozzle; this was supported by sequence alignment and secondary structure prediction studies. These similarities were not observed in the new reconstruction of protein p9 presented here, which builds the hexameric nozzle of ϕ29, a virus that infects Gram+ bacteria. The results suggest that the Podoviridae nozzle has evolved to adapt to membrane composition of the infected host.","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"5 1","pages":"9"},"PeriodicalIF":0.0,"publicationDate":"2013-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89481760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BacteriophagePub Date : 2013-10-01DOI: 10.4161/bact.26673
Björn H Lindqvist
{"title":"Life in Science: Björn H Lindqvist.","authors":"Björn H Lindqvist","doi":"10.4161/bact.26673","DOIUrl":"https://doi.org/10.4161/bact.26673","url":null,"abstract":"","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"3 4","pages":"e26673"},"PeriodicalIF":0.0,"publicationDate":"2013-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.4161/bact.26673","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31881536","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BacteriophagePub Date : 2013-10-01Epub Date: 2013-10-24DOI: 10.4161/bact.26825
Matthew P Lungren, Diana Christensen, Ravi Kankotia, Irene Falk, Ben E Paxton, Charles Y Kim
{"title":"Bacteriophage K for reduction of <i>Staphylococcus aureus</i>biofilm on central venous catheter material.","authors":"Matthew P Lungren, Diana Christensen, Ravi Kankotia, Irene Falk, Ben E Paxton, Charles Y Kim","doi":"10.4161/bact.26825","DOIUrl":"https://doi.org/10.4161/bact.26825","url":null,"abstract":"<p><p>The purpose of this project was to determine whether bacteriophage can reduce bacterial colonization and biofilm formation on central venous catheter material. Twenty silicone discs were inoculated for 24 h with broth culture of Methicillin sensitive <i>staphylococcus aureus</i> (0.5 McFarland standard). The inoculate was aspirated and discs placed into two equal groups for 24 h: (1) untreated controls; (2) bacteriophage treatment (<i>staphylococcal</i> bacteriophage K, propagated titer > 10<sup>8</sup>). At the completion of the experiment discs were processed for quantitative culture. Statistical testing was performed using the rank sum test. Mean colony forming units (CFU) were significantly decreased in experimental compared with controls (control 6.3 × 10<sup>5</sup> CFU, experimental 6.7 × 10<sup>1</sup>, <i>P</i> ≤ 0.0001). Application of bacteriophage to biofilm infected central venous catheter material significantly reduced bacterial colonization and biofilm presence. Our data suggests that bacteriophage treatment may be a feasible strategy for addressing central venous catheter staph aureus biofilm infections.</p>","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"3 4","pages":"e26825"},"PeriodicalIF":0.0,"publicationDate":"2013-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.4161/bact.26825","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31893989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BacteriophagePub Date : 2013-07-11DOI: 10.4161/bact.25571
B. Yeo, K. Gin
{"title":"Cyanophages infecting Anabaena circinalis and Anabaena cylindrica in a tropical reservoir","authors":"B. Yeo, K. Gin","doi":"10.4161/bact.25571","DOIUrl":"https://doi.org/10.4161/bact.25571","url":null,"abstract":"A total of six lytic cyanophages have been isolated from Kranji Reservoir in Singapore. Two cyanophages infected a toxic species of cyanobacterium, A. circinalis, while four cyanophages infected the cyanobacterium A. cylindrica. To obtain the cyanophages that infect A. circinalis and A. cylindrica, two isolation methods were established. Cyanophages infecting A. circinalis were successfully isolated with well assay, and cyaophages infecting A. cylindrica were successfully isolated with double layer plaque assay. These isolation methods resulted in a rapid and significant lytic effect. A. circinalis cyanophage isolates are potential biocontrol of A. circinalis, due to the ability of cyanophage isolates in suppressing the growth of A. circinalis effectively. During the isolation process, we observed that A. cylindrica experienced changes in aggregation and algal mat formation when inoculated with the cyanophage isolates.","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"83 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2013-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"86202315","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BacteriophagePub Date : 2013-07-11DOI: 10.4161/bact.25985
J. Mahony, S. Ainsworth, D. van Sinderen
{"title":"Tale of the unseen phage","authors":"J. Mahony, S. Ainsworth, D. van Sinderen","doi":"10.4161/bact.25985","DOIUrl":"https://doi.org/10.4161/bact.25985","url":null,"abstract":"Lactococcal phages are among the best characterized phages of Gram-positive bacteria and as such represent excellent models to promote our understanding of phage-host interactions. In recent years, microarray technology has been employed to define the transcriptional profile of phages during infection, while simultaneously uncovering the response of the host to the infection event. The responses to infection by a lytic and a temperate phage of Lactococcus lactis were analyzed, combined with an assessment of the host response to lysogenisation with the temperate phage, Tuc2009. Here, we discuss the lessons learned from such transcriptional profiling studies, focusing on studies relating to phages of Lactococcus lactis, and how this knowledge may be applied to future studies.","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"26 1","pages":"98"},"PeriodicalIF":0.0,"publicationDate":"2013-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90219115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BacteriophagePub Date : 2013-07-01Epub Date: 2013-07-26DOI: 10.4161/bact.25697
Joelle Woolston, Adam R Parks, Tamar Abuladze, Bradley Anderson, Manrong Li, Chandi Carter, Leigh Farris Hanna, Serena Heyse, Duane Charbonneau, Alexander Sulakvelidze
{"title":"Bacteriophages lytic for <i><i>Salmonella</i></i> rapidly reduce <i><i>Salmonella</i></i> contamination on glass and stainless steel surfaces.","authors":"Joelle Woolston, Adam R Parks, Tamar Abuladze, Bradley Anderson, Manrong Li, Chandi Carter, Leigh Farris Hanna, Serena Heyse, Duane Charbonneau, Alexander Sulakvelidze","doi":"10.4161/bact.25697","DOIUrl":"https://doi.org/10.4161/bact.25697","url":null,"abstract":"A cocktail of six lytic bacteriophages, SalmoFresh™, significantly (p < 0.05) reduced the number of surface-applied Salmonella Kentucky and Brandenburg from stainless steel and glass surfaces by > 99% (2.1–4.3 log). Both strains were susceptible to SalmoFresh™ in the spot-test assay. Conversely, SalmoFresh™ was unable to reduce surface contamination with a Salmonella Paratyphi B strain that was not susceptible to the phage cocktail in the spot-test assay. However, by replacing two SalmoFresh™ component phages with two new phages capable of lysing the Paratyphi B strain in the spot-test assay, the target range of the cocktail was shifted to include the Salmonella Paratyphi B strain. The modified cocktail, SalmoLyse™, was able to significantly (p < 0.05) reduce surface contamination of the Paratyphi B strain by > 99% (2.1–4.1 log). The data show that both phage cocktails were effective in significantly reducing the levels of Salmonella on hard surfaces, provided the contaminating strains were susceptible in the spot-test (i.e., spot-test susceptibility was indicative of efficacy in subsequent surface decontamination studies). The data also support the concept that phage preparations can be customized to meet the desired antibacterial application.","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"3 3","pages":"e25697"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.4161/bact.25697","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31862928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BacteriophagePub Date : 2013-07-01Epub Date: 2013-07-29DOI: 10.4161/bact.25857
Jeremy J Barr, Merry Youle, Forest Rohwer
{"title":"Innate and acquired bacteriophage-mediated immunity.","authors":"Jeremy J Barr, Merry Youle, Forest Rohwer","doi":"10.4161/bact.25857","DOIUrl":"https://doi.org/10.4161/bact.25857","url":null,"abstract":"<p><p>We recently described a novel, non-host-derived, phage-mediated immunity active at mucosal surfaces, the main site of pathogen entry in metazoans. In that work, we showed that phage T4 adheres to mucus glycoproteins via immunoglobulin-like domains displayed on its capsid. This adherence positions the phage in mucus surfaces where they are more likely to encounter and kill bacteria, thereby benefiting both the phage and its metazoan host. We presented this phage-metazoan symbiosis based on an exclusively lytic model of phage infection. Here we extend our bacteriophage adherence to mucus (BAM) model to consider the undoubtedly more complex dynamics in vivo. We hypothesize how mucus-adherent phages, both lytic and temperate, might impact the commensal microbiota as well as protect the metazoan epithelium from bacterial invasion. We suggest that BAM may provide both an innate and an acquired antimicrobial immunity.</p>","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"3 3","pages":"e25857"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.4161/bact.25857","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31862802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Properties and mutation studies of a bacteriophage-derived chimeric recombinant staphylolytic protein P128: Comparison to recombinant lysostaphin.","authors":"Sanjeev Rajagopalan Saravanan, Vivek Daniel Paul, Shilpa George, Sudarson Sundarrajan, Nirmal Kumar, Madhavi Hebbur, Naveen Kumar, Ananda Veena, Uma Maheshwari, Chemira Biddappa Appaiah, Muralidharan Chidambaran, Anuradha Gopal Bhat, Sukumar Hariharan, Sriram Padmanabhan","doi":"10.4161/bact.26564","DOIUrl":"https://doi.org/10.4161/bact.26564","url":null,"abstract":"<p><p>P128 is a chimeric anti-staphylococcal protein having a catalytic domain from a <i>Staphylococcus</i> bacteriophage K tail associated structural protein and a cell wall targeting domain from the <i>Staphylococcus</i> bacteriocin-lysostaphin. In this study, we disclose additional properties of P128 and compared the same with lysostaphin. While lysostaphin was found to get inactivated by heat and was inactive on its parent strain <i>S. simulans</i> biovar <i>staphylolyticus</i>, P128 was thermostable and was lytic towards <i>S. simulans</i> biovar <i>staphylolyticus</i> demonstrating a difference in their mechanism of action. Selected mutation studies of the catalytic domain of P128 showed that arginine and cysteine, at 40th and 76th positions respectively, are critical for the staphylolytic activity of P128, although these amino acids are not conserved residues. In comparison to native P128, only the R40S mutant (P301) was catalytically active on zymogram gel and had a similar secondary structure, as assessed by circular dichroism analysis and in silico modeling with similar cell binding properties. Mutation of the arginine residue at 40th position of the P128 molecule caused dramatic reduction in the V<sub>max</sub> (∆OD<sub>600</sub> [mg/min]) value (nearly 270 fold) and the recombinant lysostaphin also showed lesser V<sub>max</sub> value (nearly 1.5 fold) in comparison to the unmodified P128 protein. The kinetic parameters such as apparent K<sub>m</sub> (K<sub>m</sub><sup>APP</sup>) and apparent K<sub>cat</sub> (K<sub>cat</sub><sup>APP</sup>) of the native P128 protein also showed significant differences in comparison to the values observed for P301 and lysostaphin.</p>","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"3 3","pages":"e26564"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.4161/bact.26564","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31881535","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BacteriophagePub Date : 2013-07-01Epub Date: 2013-10-24DOI: 10.4161/bact.26861
Jochen Klumpp, Martin J Loessner
{"title":"<i>Listeria</i> phages: Genomes, evolution, and application.","authors":"Jochen Klumpp, Martin J Loessner","doi":"10.4161/bact.26861","DOIUrl":"10.4161/bact.26861","url":null,"abstract":"<p><p><i>Listeria</i> is an important foodborne pathogen and the causative agent of Listeriosis, a potentially fatal infection. Several hundred <i>Listeria</i> bacteriophages have been described over the past decades, but only few have actually been characterized in some detail, and genome sequences are available for less than twenty of them. We here present an overview of what is currently known about <i>Listeria</i> phage genomics, their role in host evolution and pathogenicity, and their various applications in biotechnology and diagnostics.</p>","PeriodicalId":8686,"journal":{"name":"Bacteriophage","volume":"3 3","pages":"e26861"},"PeriodicalIF":0.0,"publicationDate":"2013-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3827098/pdf/bact-3-e26861.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31881537","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}