Computer methods and programs in biomedicine update最新文献

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Multipath2.0: Extending Multilayer Reproducible Pathway Models with Omics Data Multipath2.0:用组学数据扩展多层可复制通路模型
Computer methods and programs in biomedicine update Pub Date : 2025-01-01 DOI: 10.1016/j.cmpbup.2025.100189
Zaynab Hammoud , Mohammad Al Maaz , Alicia D'Angelo , Frank Kramer
{"title":"Multipath2.0: Extending Multilayer Reproducible Pathway Models with Omics Data","authors":"Zaynab Hammoud ,&nbsp;Mohammad Al Maaz ,&nbsp;Alicia D'Angelo ,&nbsp;Frank Kramer","doi":"10.1016/j.cmpbup.2025.100189","DOIUrl":"10.1016/j.cmpbup.2025.100189","url":null,"abstract":"<div><h3>Background</h3><div>Biological systems are often perceived as independent and consequently analyzed individually. In the field of omics, multiple disciplines target the study of specific types of molecules, such as genomics. The support of more data sources in these analyses is becoming more crucial for understanding the interplay of biological systems. However, this requires integration of heterogeneous knowledge, which is considered highly challenging in bioinformatics and biomedicine. Therefore, the R package Multipath was developed to model biological pathways as multilayered graphs and integrate influencing knowledge including proteins and drugs. In its previous form, Multipath generated multilayer models of BioPAX-encoded pathways and included features to integrate drug and protein information from DrugBank and UniProtKB respectively. Although the model showed remarkable utility, including further data sources ensures enriching and expanding its capabilities.</div></div><div><h3>Results</h3><div>In this paper, a new version Multipath 2.0 is presented. The update additionally supports the two databases KEGG Genes and OMIM, which serve as the source for gene and disease entries and interactions. Information on the interactions between the previously and newly added nodes are extracted and integrated. The Multipath 2.0 offers features to update the original multilayer model and integrate the corresponding nodes and edges into two additional layers referring to KEGG Genes and OMIM. Furthermore, the embedded nodes are inter- and intra-connected using interactions from the original and newly supported data sources.</div></div><div><h3>Conclusion</h3><div>The R Package Multipath is presented with the main functions that are newly developed to support the integration of the databases KEGG Genes and OMIM. The model comprises multiple information relevant to the analysis of pathway data, and offers a reproducible and simplified view of complex, intertwined systems. Through the application of such highly integrated models the inference of new knowledge becomes easier and contributes to many fields such as drug repurposing and biomarker discovery.</div></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"7 ","pages":"Article 100189"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143706495","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A comprehensive review of the use of Shapley value to assess node importance in the analysis of biological networks 在生物网络分析中使用Shapley值来评估节点重要性的全面回顾
Computer methods and programs in biomedicine update Pub Date : 2025-01-01 DOI: 10.1016/j.cmpbup.2025.100185
Giang Pham, Paolo Milazzo
{"title":"A comprehensive review of the use of Shapley value to assess node importance in the analysis of biological networks","authors":"Giang Pham,&nbsp;Paolo Milazzo","doi":"10.1016/j.cmpbup.2025.100185","DOIUrl":"10.1016/j.cmpbup.2025.100185","url":null,"abstract":"<div><h3>Background:</h3><div>In 2017, Lundberg and Lee introduced SHAP, a breakthrough in Explainable AI, creatively applying the Shapley value to estimate the importance of input features in machine learning outputs. The Shapley value, from cooperative game theory, fairly distributes system gains among participants. Inspired by SHAP’s success, this survey explores the application of Shapley value-based methods in biological network analysis.</div></div><div><h3>Method:</h3><div>We conducted a comprehensive literature search on the application of the Shapley value in biological network analysis from 2004 to 2024. From this, we focused on studies that applied the Shapley value in innovative and non-trivial ways, distinct from its typical usage.</div></div><div><h3>Result:</h3><div>The review identified six original studies that provide novel applications of the Shapley value in analyzing biological networks. These methods have also inspired further development and applications. For each, we discuss the foundational contributions, subsequent advancements, and applications.</div></div><div><h3>Discussion:</h3><div>Although the reviewed methods share the common objective of using the Shapley value to estimate an element’s contribution within a system, each one takes a distinct approach to modeling the cooperative game. Some methods employ game settings that enable more efficient Shapley value calculations, albeit with a narrower scope, as they are tailored to specific problems. Other methods offer broader applicability but encounter the usual computational challenges associated with calculating the exact Shapley value due to its time complexity. Fortunately, these challenges can be mitigated through the use of approximation techniques. Despite the computational challenges, Shapley value-based methods demonstrate to be beneficial for the interpretation of biological networks.</div></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"7 ","pages":"Article 100185"},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143510601","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fostering digital health literacy to enhance trust and improve health outcomes 培养数字卫生素养,增强信任并改善卫生成果
Computer methods and programs in biomedicine update Pub Date : 2024-02-01 DOI: 10.1016/j.cmpbup.2024.100140
Kristine Sørensen
{"title":"Fostering digital health literacy to enhance trust and improve health outcomes","authors":"Kristine Sørensen","doi":"10.1016/j.cmpbup.2024.100140","DOIUrl":"https://doi.org/10.1016/j.cmpbup.2024.100140","url":null,"abstract":"","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"34 14","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139814804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep learning based detection of silicosis from computed tomography images 基于深度学习的计算机断层扫描图像矽肺病检测
Computer methods and programs in biomedicine update Pub Date : 2024-01-01 DOI: 10.1016/j.cmpbup.2024.100166
Hamit Aksoy , Ümit Atila , Sertaç Arslan
{"title":"Deep learning based detection of silicosis from computed tomography images","authors":"Hamit Aksoy ,&nbsp;Ümit Atila ,&nbsp;Sertaç Arslan","doi":"10.1016/j.cmpbup.2024.100166","DOIUrl":"10.1016/j.cmpbup.2024.100166","url":null,"abstract":"<div><div>Artificial intelligence has increasingly been used in interpreting medical images to support the timely treatment of diseases by providing early and accurate diagnosis. Pneumoconiosis is a tissue reaction that develops as a result of the accumulation of inorganic dust in the lungs. The most common types of pneumoconiosis include diseases such as coal worker's pneumoconiosis, silicosis, asbestosis, and siderosis. Silicosis, which has maintained its importance since the 1900s and has seen over 182,000 articles published in the last 10 years, is a global health problem. The automated detection and recognition of silicosis in lung computed tomography (CT) images can be considered the backbone of assisting the silicosis diagnosis process. Automated medical assistance systems developed using artificial intelligence can simplify the medical examination process and reduce the time required to start accurate treatment. Although the literature contains various studies that benefit silicosis diagnosis using chest X-ray images or pneumoconiosis diagnosis using CT images, there is not enough classification study that can particularly aid the diagnosis of silicosis in CT images.</div><div>The method of early detection of silicosis from chest radiographs and CT images has been a challenging task due to the high variability among pneumoconiosis readers. Based on the success of deep learning in the classification and segmentation of medical images, this study has shown that deep learning networks and transfer learning algorithms can detect silicosis with high accuracy by classifying CT images. The performance of the six algorithms examined in the study is compared, and the algorithm with the best performance is recommended. Performance criteria such as accuracy, precision, specificity, and F1-score of the algorithms used in the study were calculated. The accuracy rates of the models were obtained as 92.62 %, 93.03 %, 92.76 %, 95.38 %, 97.29 %, and 95.17 % for AlexNet, VGG16, ResNet50, InceptionV3, Xception, and DenseNet121, respectively. These results show that Xception outperformed the other algorithms and was the most successful algorithm in the automatic detection of silicosis with an accuracy rate of 97.29 %.</div><div>Additionally, a new dataset consisting of tomography images from silicosis patients is presented in this study. Experimental results have shown that transfer learning algorithms can significantly benefit the diagnosis of silicosis by successfully classifying CT images. The findings of the study highlight the clinical importance of artificial intelligence methods in medical image analysis and early disease diagnosis.</div></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"6 ","pages":"Article 100166"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142703968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An evaluation of the commonly used portable medical sensors performance in comparison to clinical test results for telehealth systems 将常用便携式医疗传感器的性能与远程医疗系统的临床测试结果进行对比评估
Computer methods and programs in biomedicine update Pub Date : 2024-01-01 DOI: 10.1016/j.cmpbup.2024.100147
Rafiqul Islam Maruf , Saori Tou , Rieko Izukura , Yoko Sato , Mariko Nishikitani , Kimiyo Kikuchi , Fumihiko Yokota , Subaru Ikeda , Rakibul Islam , Ashir Ahmed , Masashi Miyazaki , Naoki Nakashima
{"title":"An evaluation of the commonly used portable medical sensors performance in comparison to clinical test results for telehealth systems","authors":"Rafiqul Islam Maruf ,&nbsp;Saori Tou ,&nbsp;Rieko Izukura ,&nbsp;Yoko Sato ,&nbsp;Mariko Nishikitani ,&nbsp;Kimiyo Kikuchi ,&nbsp;Fumihiko Yokota ,&nbsp;Subaru Ikeda ,&nbsp;Rakibul Islam ,&nbsp;Ashir Ahmed ,&nbsp;Masashi Miyazaki ,&nbsp;Naoki Nakashima","doi":"10.1016/j.cmpbup.2024.100147","DOIUrl":"10.1016/j.cmpbup.2024.100147","url":null,"abstract":"<div><h3>Background and Objective</h3><p>One of the primary challenges faced by telehealth systems is the accurate transmission of patient information to remote doctors. In this context, portable medical sensors deployed at the remote patients' end play a crucial role in measuring vital information. There are many sensors available in the market. However, the accuracy of the sensors has been always a concern. The objective of this study is to verify different sensors and create awareness for using accurate sensors to avoid misdiagnosis for the patients’ safety.</p></div><div><h3>Methods</h3><p>This study considered the test result of a Japanese clinical pathology laboratory as the reference gold standard. The clinical pathology laboratory uses 1) Hexokinase UV method for blood glucose, 2) Enzymatic Determination method for cholesterol, 3) Automatic Analyzer (EDTA-2 K) of Hemoglobin, and 4) Uricase POD method for uric acid. To assess the performance of a medical sensor, its test results were compared to the gold standard test results obtained from the laboratory using the same sample. A Normalized Root Mean Square Error (NRMSE) threshold of less than 0.2 was established as the criterion for determining whether the medical sensor's performance fell within an acceptable range.</p></div><div><h3>Results</h3><p>Among the eight most commonly used blood glucose devices in the Asian market, only one device was deemed acceptable with NRMSE less than 0.2. However, all four devices found in the Japanese market showed their acceptability. In the case of cholesterol, hemoglobin, and uric acid devices, only a limited number of items were available in Asian markets. Some of the hemoglobin and uric acid devices were found to be somewhat acceptable, while all the cholesterol sensors were found erroneous.</p></div><div><h3>Conclusions</h3><p>This study has clearly shown the issues with the portable medical sensors and recommends the device approval authority of each country to approve sales of the quality sensors only for patients’ safety.</p></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"5 ","pages":"Article 100147"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666990024000144/pdfft?md5=6cb858a0f60b29a1fc21629928f765b9&pid=1-s2.0-S2666990024000144-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140091696","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
S-1 plus oxaloplatin (S-1OX) versus capecitabine plus oxaloplatin (CAPOX) for advanced gastric cancer: A systematic review and meta-analysis S-1加奥沙利铂(S-1OX)与卡培他滨加奥沙利铂(CAPOX)治疗晚期胃癌:系统综述与荟萃分析
Computer methods and programs in biomedicine update Pub Date : 2024-01-01 DOI: 10.1016/j.cmpbup.2024.100151
S.M.Zeeshan Qadar , Zhiyong Dong , Sheikh Mohammed Shariful Islam , Jianxue Wang , Xiling Xu , Fakhsheena Anjum , Sana Shamim , Bafreen Sherif , Sundas Ali
{"title":"S-1 plus oxaloplatin (S-1OX) versus capecitabine plus oxaloplatin (CAPOX) for advanced gastric cancer: A systematic review and meta-analysis","authors":"S.M.Zeeshan Qadar ,&nbsp;Zhiyong Dong ,&nbsp;Sheikh Mohammed Shariful Islam ,&nbsp;Jianxue Wang ,&nbsp;Xiling Xu ,&nbsp;Fakhsheena Anjum ,&nbsp;Sana Shamim ,&nbsp;Bafreen Sherif ,&nbsp;Sundas Ali","doi":"10.1016/j.cmpbup.2024.100151","DOIUrl":"https://doi.org/10.1016/j.cmpbup.2024.100151","url":null,"abstract":"<div><h3>Purpose</h3><p>Several therapeutic combinations are available for the treatment of advanced gastric cancer (AGC). It is unclear which combinations are most beneficial to the patients. The purpose of this study was to compare the efficacy and safety of Tegafur/ gimeracil/ oteracil (S-1) plus oxaliplatin (S-1OX) with capecitabine plus oxaliplatin (CAPOX) in patients with AGC.</p></div><div><h3>Materials and Methods</h3><p>Relevant randomized controlled trials were searched in MEDLINE, EMBASE, The Cochrane Library (CENTRAL), two major Chinese biomedical databases (CBM, CNKI), and registry centers until July 22, 2019, with no language restrictions. Data were extracted for overall response rate (ORR), time to progression (TTP), overall survival time (OST), and toxicity. The systematic review was performed according to the recommendations of the Cochrane collaboration. RevMan 5.3.1 was used for statistical analysis.</p></div><div><h3>Results</h3><p>A total of 6 randomized controlled trials involving 911 patients were included. The quality of the trials was less than 3 points. All the trials demonstrated a significantly improved toxicity (hand-foot syndrome and neuropathy) in the S-1OX trials (p &lt; 0.05). There was no statistically significant difference (p &gt; 0.05) between S-1OX versus CAPOX in terms of ORR, OST, TTP. Any of the subgroup analyses did not exhibit heterogeneity, so the fixed-effects model be used to execute the subgroup meta-analysis.</p></div><div><h3>Conclusions</h3><p>Both S-1OX and CAPOX showed similar efficacy for treatment of AGC. However, S1-OX appeared to present less toxicity in terms of hand-foot syndrome and neuropathy as compared to CAPOX.</p></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"5 ","pages":"Article 100151"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666990024000181/pdfft?md5=2f78d9ea45ec70c9d3f289f0aee582c3&pid=1-s2.0-S2666990024000181-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140160787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Delayed matrix pencil method for local shear wave viscoelastographic estimation 用于局部剪切波粘弹性估算的延迟矩阵铅笔法
Computer methods and programs in biomedicine update Pub Date : 2024-01-01 DOI: 10.1016/j.cmpbup.2024.100156
X. Li, S. Turco, R.M. Aarts, H. Wijkstra, M. Mischi
{"title":"Delayed matrix pencil method for local shear wave viscoelastographic estimation","authors":"X. Li,&nbsp;S. Turco,&nbsp;R.M. Aarts,&nbsp;H. Wijkstra,&nbsp;M. Mischi","doi":"10.1016/j.cmpbup.2024.100156","DOIUrl":"10.1016/j.cmpbup.2024.100156","url":null,"abstract":"<div><p>Shear wave (SW) elastography is an ultrasound imaging modality that provides quantitative viscoelastic measurements of tissue. The phase difference method allows for local estimation of viscoelasticity by computing the dispersion curve using phases from two laterally-spaced pixels. However, this method is sensitive to measurement noise in the estimated SW particle velocities. Hence, we propose the delayed matrix pencil method to investigate this problem, and validated its feasibility both <em>in-silico</em> and <em>in-vitro</em>. The performance was compared with the original phase difference method and other two alternative techniques based on lowpass filtering and discrete wavelet transform denoising. The estimated viscoelastic values are summarized in box plots and followed by statistical analysis. Results from both studies show the proposed method to be more robust to noise with the smallest interquartile range in both elasticity and viscosity.</p></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"5 ","pages":"Article 100156"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666990024000235/pdfft?md5=407281c736aa0eadcc9ebd09eb287aa3&pid=1-s2.0-S2666990024000235-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140780086","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Studying usability of public health surveillance maps through framework based heuristic evaluation 通过基于框架的启发式评估研究公共卫生监测地图的可用性
Computer methods and programs in biomedicine update Pub Date : 2024-01-01 DOI: 10.1016/j.cmpbup.2024.100143
Hurmat Ali Shah, Mowafa Househ, Jens Schneider, Dena A. Al-Thani, Marco Agus
{"title":"Studying usability of public health surveillance maps through framework based heuristic evaluation","authors":"Hurmat Ali Shah,&nbsp;Mowafa Househ,&nbsp;Jens Schneider,&nbsp;Dena A. Al-Thani,&nbsp;Marco Agus","doi":"10.1016/j.cmpbup.2024.100143","DOIUrl":"https://doi.org/10.1016/j.cmpbup.2024.100143","url":null,"abstract":"<div><p>Public health surveillance systems play a crucial role in detecting and responding to disease outbreaks. Visualizations of surveillance data are important for decision-making, but little attention has been paid to the usability and interaction of such systems. In this paper, we developed a set of 10 heuristics to assess the visualization and usability of public health surveillance systems. The heuristics cover aspects of perception, cognition, and interaction. The perception deals with how the system looks in the first glance and whether it has pleasant effect on the user or otherwise. Cognition deals with the question of whether enough information is provided to use the system, while usability and interaction deal with whether the system is user-friendly in terms of the tools provided for interaction and use. We recruited a panel of experts to evaluate a set of systems using our heuristics. Results showed that there was variation in the scores of the experts' assessments, indicating the importance of multiple expert evaluations. Our heuristics provide a practical and comprehensive tool for assessing the visualization and usability of public health surveillance systems, which can lead to improved decision-making and ultimately better public health outcomes. The results suggest that the heuristic based evaluation through a panel of experts can provide meaningful results and insights into the usability aspects of public health systems. The results suggest that for some systems there can be agreement in terms of evaluation while for some other systems the experts’ opinions can vary based on the weightage and importance each expert gives to a particular aspect.</p></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"5 ","pages":"Article 100143"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666990024000107/pdfft?md5=1561ce8d225c67f6c84e908ae17b6e6d&pid=1-s2.0-S2666990024000107-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140000141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Artificial Intelligence for Clinical Prediction: Exploring Key Domains and Essential Functions 人工智能用于临床预测:探索关键领域和基本功能
Computer methods and programs in biomedicine update Pub Date : 2024-01-01 DOI: 10.1016/j.cmpbup.2024.100148
Mohamed Khalifa , Mona Albadawy
{"title":"Artificial Intelligence for Clinical Prediction: Exploring Key Domains and Essential Functions","authors":"Mohamed Khalifa ,&nbsp;Mona Albadawy","doi":"10.1016/j.cmpbup.2024.100148","DOIUrl":"10.1016/j.cmpbup.2024.100148","url":null,"abstract":"<div><h3>Background</h3><p>Clinical prediction is integral to modern healthcare, leveraging current and historical medical data to forecast health outcomes. The integration of Artificial Intelligence (AI) in this field significantly enhances diagnostic accuracy, treatment planning, disease prevention, and personalised care leading to better patient outcomes and healthcare efficiency.</p></div><div><h3>Methods</h3><p>This systematic review implemented a structured four-step methodology, including an extensive literature search in academic databases (PubMed, Embase, Google Scholar), applying specific inclusion and exclusion criteria, data extraction focusing on AI techniques and their applications in clinical prediction, and a thorough analysis of the collected information to understand AI's roles in enhancing clinical prediction.</p></div><div><h3>Results</h3><p>Through the analysis of 74 experimental studies, eight key domains, where AI significantly enhances clinical prediction, were identified: (1) Diagnosis and early detection of disease; (2) Prognosis of disease course and outcomes; (3) Risk assessment of future disease; (4) Treatment response for personalised medicine; (5) Disease progression; (6) Readmission risks; (7) Complication risks; and (8) Mortality prediction. Oncology and radiology come on top of the specialties benefiting from AI in clinical prediction.</p></div><div><h3>Discussion</h3><p>The review highlights AI's transformative impact across various clinical prediction domains, including its role in revolutionising diagnostics, improving prognosis accuracy, aiding in personalised medicine, and enhancing patient safety. AI-driven tools contribute significantly to the efficiency and effectiveness of healthcare delivery.</p></div><div><h3>Conclusion and recommendations</h3><p>AI's integration in clinical prediction marks a substantial advancement in healthcare. Recommendations include enhancing data quality and accessibility, promoting interdisciplinary collaboration, focusing on ethical AI practices, investing in AI education, expanding clinical trials, developing regulatory oversight, involving patients in the AI integration process, and continuous monitoring and improvement of AI systems.</p></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"5 ","pages":"Article 100148"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666990024000156/pdfft?md5=25b89b60dd2d132f8cd31e3852e51d32&pid=1-s2.0-S2666990024000156-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140086333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative evaluation of low-cost 3D scanning devices for ear acquisition 用于耳朵采集的低成本 3D 扫描设备比较评估
Computer methods and programs in biomedicine update Pub Date : 2024-01-01 DOI: 10.1016/j.cmpbup.2024.100135
Michaela Servi, Elisa Mussi, Yary Volpe
{"title":"Comparative evaluation of low-cost 3D scanning devices for ear acquisition","authors":"Michaela Servi,&nbsp;Elisa Mussi,&nbsp;Yary Volpe","doi":"10.1016/j.cmpbup.2024.100135","DOIUrl":"10.1016/j.cmpbup.2024.100135","url":null,"abstract":"<div><p>Autologous ear reconstruction is a surgical procedure performed in the case of defects of the outer ear in which the malformed anatomy is reconstructed with autologous cartilage tissue and often involves the use of surgical guides modelled from a digital reconstruction of the ear anatomy. To obtain such three-dimensional anatomy, traditional imaging methods, which are expensive and invasive, can be replaced by professional 3D scanners or low-cost commercial devices. In this context, this paper focuses on the evaluation of two devices for the acquisition of the outer ear, the Intel® RealSense D405™ (stereo camera) and the TrueDepth camera of the iPhone® 13 (structured light camera), proposing a comparison based on four parameters: accuracy, precision, deviation range and point-to-point distance, in order to assess their usability in the medical field, and in particular in the context of autologous ear reconstruction. The results show that, despite significantly different handling of the raw data, the performance of the two devices is comparable: average accuracy is 0.76 mm for the D405 and 0.95 mm for the iPhone 13, average precision is 0.071 mm for the D405 and 0.065 mm for the iPhone 13, average range of deviation is 3.12 mm for the D405 and 3.64 mm for the iPhone 13.</p></div>","PeriodicalId":72670,"journal":{"name":"Computer methods and programs in biomedicine update","volume":"5 ","pages":"Article 100135"},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2666990024000028/pdfft?md5=2b3a59598fbf0e022f831d85098b0645&pid=1-s2.0-S2666990024000028-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139392022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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