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Annual Review of Virology最新文献

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False Alarm: XMRV, Cancer, and Chronic Fatigue Syndrome. 虚假警报XMRV、癌症和慢性疲劳综合征。
IF 8.1 1区 医学
Annual Review of Virology Pub Date : 2024-09-01 Epub Date: 2024-08-30 DOI: 10.1146/annurev-virology-111821-125122
John M Coffin, Mary F Kearney
{"title":"False Alarm: XMRV, Cancer, and Chronic Fatigue Syndrome.","authors":"John M Coffin, Mary F Kearney","doi":"10.1146/annurev-virology-111821-125122","DOIUrl":"10.1146/annurev-virology-111821-125122","url":null,"abstract":"<p><p>Xenotropic murine leukemia virus (MLV)-related virus (XMRV) was first described in 2006 in some human prostate cancers. But it drew little attention until 2009, when it was also found, as infectious virus and as MLV-related DNA, in samples from people suffering from myalgic encephalomyelitis/chronic fatigue syndrome (ME/CFS). This discovery was rapidly followed by efforts of the international research community to understand the significance of the association and its potential to spread widely as an important human pathogen. Within a few years, efforts by researchers worldwide failed to repeat these findings, and mounting evidence for laboratory contamination with mouse-derived virus and viral DNA sequences became accepted as the explanation for the initial findings. As researchers engaged in these studies, we present here a historical review of the rise and fall of XMRV as a human pathogen, and we discuss the lessons learned from these events.</p>","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":"261-281"},"PeriodicalIF":8.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141560121","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacteriophage T4 as a Protein-Based, Adjuvant- and Needle-Free, Mucosal Pandemic Vaccine Design Platform. 将噬菌体 T4 作为基于蛋白质、无佐剂和无针头的黏膜大流行病疫苗设计平台。
IF 8.1 1区 医学
Annual Review of Virology Pub Date : 2024-09-01 Epub Date: 2024-08-30 DOI: 10.1146/annurev-virology-111821-111145
Jingen Zhu, Pan Tao, Ashok K Chopra, Venigalla B Rao
{"title":"Bacteriophage T4 as a Protein-Based, Adjuvant- and Needle-Free, Mucosal Pandemic Vaccine Design Platform.","authors":"Jingen Zhu, Pan Tao, Ashok K Chopra, Venigalla B Rao","doi":"10.1146/annurev-virology-111821-111145","DOIUrl":"10.1146/annurev-virology-111821-111145","url":null,"abstract":"<p><p>The COVID-19 pandemic has transformed vaccinology. Rapid deployment of mRNA vaccines has saved countless lives. However, these platforms have inherent limitations including lack of durability of immune responses and mucosal immunity, high cost, and thermal instability. These and uncertainties about the nature of future pandemics underscore the need for exploring next-generation vaccine platforms. Here, we present a novel protein-based, bacteriophage T4 platform for rapid design of efficacious vaccines against bacterial and viral pathogens. Full-length antigens can be displayed at high density on a 120 × 86 nm phage capsid through nonessential capsid binding proteins Soc and Hoc. Such nanoparticles, without any adjuvant, induce robust humoral, cellular, and mucosal responses when administered intranasally and confer sterilizing immunity. Combined with structural stability and ease of manufacture, T4 phage provides an excellent needle-free, mucosal pandemic vaccine platform and allows equitable vaccine access to low- and middle-income communities across the globe.</p>","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":"395-420"},"PeriodicalIF":8.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11690488/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141072063","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diverse Antiphage Defenses Are Widespread Among Prophages and Mobile Genetic Elements. 噬菌体和移动遗传因子中普遍存在多种抗噬菌体防御机制
IF 8.1 1区 医学
Annual Review of Virology Pub Date : 2024-09-01 Epub Date: 2024-08-30 DOI: 10.1146/annurev-virology-100422-125123
Landon J Getz, Karen L Maxwell
{"title":"Diverse Antiphage Defenses Are Widespread Among Prophages and Mobile Genetic Elements.","authors":"Landon J Getz, Karen L Maxwell","doi":"10.1146/annurev-virology-100422-125123","DOIUrl":"10.1146/annurev-virology-100422-125123","url":null,"abstract":"<p><p>Bacterial viruses known as phages rely on their hosts for replication and thus have developed an intimate partnership over evolutionary time. The survival of temperate phages, which can establish a chronic infection in which their genomes are maintained in a quiescent state known as a prophage, is tightly coupled with the survival of their bacterial hosts. As a result, prophages encode a diverse antiphage defense arsenal to protect themselves and the bacterial host in which they reside from further phage infection. Similarly, the survival and success of prophage-related elements such as phage-inducible chromosomal islands are directly tied to the survival and success of their bacterial host, and they also have been shown to encode numerous antiphage defenses. Here, we describe the current knowledge of antiphage defenses encoded by prophages and prophage-related mobile genetic elements.</p>","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":" ","pages":"343-362"},"PeriodicalIF":8.1,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141477760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SEA-PHAGES and SEA-GENES: Advancing Virology and Science Education SEA-PHAGES 和 SEA-GENES：推进病毒学和科学教育
IF 11.3 1区 医学
Annual Review of Virology Pub Date : 2024-04-29 DOI: 10.1146/annurev-virology-113023-110757
Danielle M. Heller, Viknesh Sivanathan, David J. Asai, Graham F. Hatfull
{"title":"SEA-PHAGES and SEA-GENES: Advancing Virology and Science Education","authors":"Danielle M. Heller, Viknesh Sivanathan, David J. Asai, Graham F. Hatfull","doi":"10.1146/annurev-virology-113023-110757","DOIUrl":"https://doi.org/10.1146/annurev-virology-113023-110757","url":null,"abstract":"Research opportunities for undergraduate students are strongly advantageous, but implementation at a large scale presents numerous challenges. The enormous diversity of the bacteriophage population and a supportive programmatic structure provide opportunities to engage early-career undergraduates in phage discovery, genomics, and genetics. The Science Education Alliance (SEA) is an inclusive Research-Education Community (iREC) providing centralized programmatic support for students and faculty without prior experience in virology at institutions from community colleges to research-active universities to participate in two course-based projects, SEA-PHAGES (SEA Phage Hunters Advancing Genomic and Evolutionary Science) and SEA-GENES (SEA Gene-function Exploration by a Network of Emerging Scientists). Since 2008, the SEA has supported more than 50,000 undergraduate researchers who have isolated more than 23,000 bacteriophages of which more than 4,500 are fully sequenced and annotated. Students have functionally characterized hundreds of phage genes, and the phage collection has fueled the therapeutic use of phages for treatment of <jats:italic>Mycobacterium</jats:italic> infections. Participation in the SEA promotes student persistence in science education, and its inclusivity promotes a more equitable scientific community.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"104 1","pages":""},"PeriodicalIF":11.3,"publicationDate":"2024-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140835710","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Controlling Much? Viral Control of Host Chromatin Dynamics 控制了多少？病毒对宿主染色质动力学的控制
IF 11.3 1区 医学
Annual Review of Virology Pub Date : 2024-04-29 DOI: 10.1146/annurev-virology-100422-011616
Laurel E. Kelnhofer-Millevolte, Edward A. Arnold, Daniel H. Nguyen, Daphne C. Avgousti
{"title":"Controlling Much? Viral Control of Host Chromatin Dynamics","authors":"Laurel E. Kelnhofer-Millevolte, Edward A. Arnold, Daniel H. Nguyen, Daphne C. Avgousti","doi":"10.1146/annurev-virology-100422-011616","DOIUrl":"https://doi.org/10.1146/annurev-virology-100422-011616","url":null,"abstract":"Viruses are exemplary molecular biologists and have been integral to scientific discovery for generations. It is therefore no surprise that nuclear replicating viruses have evolved to systematically take over host cell function through astoundingly specific nuclear and chromatin hijacking. In this review, we focus on nuclear replicating DNA viruses—herpesviruses and adenoviruses—as key examples of viral invasion in the nucleus. We concentrate on critical features of nuclear architecture, such as chromatin and the nucleolus, to illustrate the complexity of the virus-host battle for resources in the nucleus. We conclude with a discussion of the technological advances that have enabled the discoveries we describe and upcoming steps in this burgeoning field.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"43 1","pages":""},"PeriodicalIF":11.3,"publicationDate":"2024-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140835550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Abortive Infection of Animal Cells: What Goes Wrong 动物细胞的无效感染：出了什么问题
IF 11.3 1区 医学
Annual Review of Virology Pub Date : 2024-04-18 DOI: 10.1146/annurev-virology-100422-023037
Aaron Embry, Don B. Gammon
{"title":"Abortive Infection of Animal Cells: What Goes Wrong","authors":"Aaron Embry, Don B. Gammon","doi":"10.1146/annurev-virology-100422-023037","DOIUrl":"https://doi.org/10.1146/annurev-virology-100422-023037","url":null,"abstract":"Even if a virus successfully binds to a cell, defects in any of the downstream steps of the viral life cycle can preclude the production of infectious virus particles. Such abortive infections are likely common in nature and can provide fundamental insights into the cell and host tropism of viral pathogens. Research over the past 60 years has revealed an incredible diversity of abortive infections by DNA and RNA viruses in various animal cell types. Here we discuss the general causes of abortive infections and provide specific examples from the literature to illustrate the range of abortive infections that have been reported. We also discuss how abortive infections can have critical roles in shaping host immune responses and in the development of virus-induced cancers. Finally, we describe how abortive infections can be applied to basic and clinical research, underscoring the importance of understanding these fascinating aspects of virus biology.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"79 1","pages":""},"PeriodicalIF":11.3,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140625015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rift Valley Fever Virus Encephalitis: Viral and Host Determinants of Pathogenesis 裂谷热病毒脑炎：发病的病毒和宿主决定因素
IF 11.3 1区 医学
Annual Review of Virology Pub Date : 2024-04-18 DOI: 10.1146/annurev-virology-093022-011544
Lindsay R. Wilson, Anita K. McElroy
{"title":"Rift Valley Fever Virus Encephalitis: Viral and Host Determinants of Pathogenesis","authors":"Lindsay R. Wilson, Anita K. McElroy","doi":"10.1146/annurev-virology-093022-011544","DOIUrl":"https://doi.org/10.1146/annurev-virology-093022-011544","url":null,"abstract":"Rift Valley fever virus (RVFV) is a mosquito-borne virus endemic to Africa and the Middle East. RVFV infection can cause encephalitis, which is associated with significant morbidity and mortality. Studies of RVFV encephalitis following percutaneous inoculation, as would occur following a mosquito bite, have historically been limited by a lack of consistent animal models. In this review, we describe new insights into the pathogenesis of RVFV and the opportunities provided by new mouse models. We underscore the need to consider viral strain and route of inoculation when interpreting data obtained using animal models. We discuss the trafficking of RVFV and the role of host genetics and immunity in modulating the pathogenesis of RVFV encephalitis. We also explore potential strategies to prevent and treat central nervous system disease caused by RVFV and discuss remaining knowledge gaps.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"26 1","pages":""},"PeriodicalIF":11.3,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140630355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Emergence and Evolution of SARS-CoV-2 SARS-CoV-2 的出现和演变
IF 11.3 1区 医学
Annual Review of Virology Pub Date : 2024-04-18 DOI: 10.1146/annurev-virology-093022-013037
Edward C. Holmes
{"title":"The Emergence and Evolution of SARS-CoV-2","authors":"Edward C. Holmes","doi":"10.1146/annurev-virology-093022-013037","DOIUrl":"https://doi.org/10.1146/annurev-virology-093022-013037","url":null,"abstract":"The origin of SARS-CoV-2 has evoked heated debate and strong accusations, yet seemingly little resolution. I review the scientific evidence on the origin of SARS-CoV-2 and its subsequent spread through the human population. The available data clearly point to a natural zoonotic emergence within, or closely linked to, the Huanan Seafood Wholesale Market in Wuhan. There is no direct evidence linking the emergence of SARS-CoV-2 to laboratory work conducted at the Wuhan Institute of Virology. The subsequent global spread of SARS-CoV-2 was characterized by a gradual adaptation to humans, with dual increases in transmissibility and virulence until the emergence of the Omicron variant. Of note has been the frequent transmission of SARS-CoV-2 from humans to other animals, marking it as a strongly host generalist virus. Unless lessons from the origin of SARS-CoV-2 are learned, it is inevitable that more zoonotic events leading to more epidemics and pandemics will plague human populations.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"36 1","pages":""},"PeriodicalIF":11.3,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140624896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Spectrum of Postacute Sequelae of COVID-19 in Children: From MIS-C to Long COVID 儿童 COVID-19 急性后遗症的范围：从MIS-C到长COVID
IF 11.3 1区 医学
Annual Review of Virology Pub Date : 2024-04-18 DOI: 10.1146/annurev-virology-093022-011839
Abigail S. Kane, Madeleine Godfrey, Magali Noval Rivas, Moshe Arditi, Alessio Fasano, Lael M. Yonker
{"title":"The Spectrum of Postacute Sequelae of COVID-19 in Children: From MIS-C to Long COVID","authors":"Abigail S. Kane, Madeleine Godfrey, Magali Noval Rivas, Moshe Arditi, Alessio Fasano, Lael M. Yonker","doi":"10.1146/annurev-virology-093022-011839","DOIUrl":"https://doi.org/10.1146/annurev-virology-093022-011839","url":null,"abstract":"The effects of SARS-CoV-2 infection on children continue to evolve following the onset of the COVID-19 pandemic. Although life-threatening multisystem inflammatory syndrome in children (MIS-C) has become rare, long-standing symptoms stemming from persistent immune activation beyond the resolution of acute SARS-CoV-2 infection contribute to major health sequelae and continue to pose an economic burden. Shared pathophysiologic mechanisms place MIS-C and long COVID within a vast spectrum of postinfectious conditions characterized by intestinal dysbiosis, increased gut permeability, and varying degrees of immune dysregulation. Insights obtained from MIS-C will help shape our understanding of the more indolent and prevalent postacute sequelae of COVID and ultimately guide efforts to improve diagnosis and management of postinfectious complications of SARS-CoV-2 infection in children.","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"22 1","pages":""},"PeriodicalIF":11.3,"publicationDate":"2024-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140625013","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Mammalian Cell's Guide on How to Process a Bacteriophage. 哺乳动物细胞如何处理噬菌体指南。
IF 11.3 1区 医学
Annual Review of Virology Pub Date : 2023-09-29 DOI: 10.1146/annurev-virology-111821-111322
Leo Kan, Jeremy J Barr
{"title":"A Mammalian Cell's Guide on How to Process a Bacteriophage.","authors":"Leo Kan,&nbsp;Jeremy J Barr","doi":"10.1146/annurev-virology-111821-111322","DOIUrl":"https://doi.org/10.1146/annurev-virology-111821-111322","url":null,"abstract":"<p><p>Bacteriophages are enigmatic entities that defy definition. Classically, they are specialist viruses that exclusively parasitize bacterial hosts. Yet this definition becomes limiting when we consider their ubiquity in the body coupled with their vast capacity to directly interact with the mammalian host. While phages certainly do not infect nor replicate within mammalian cells, they do interact with and gain unfettered access to the eukaryotic cell structure. With the growing appreciation for the human virome, coupled with our increased application of phages to patients within clinical settings, the potential impact of phage-mammalian interactions is progressively recognized. In this review, we provide a detailed mechanistic overview of how phages interact with the mammalian cell surface, the processes through which said phages are internalized by the cell, and the intracellular processing and fate of the phages. We then summarize the current state-of-the-field with respect to phage-mammalian interactions and their associations with health and disease states.</p>","PeriodicalId":48761,"journal":{"name":"Annual Review of Virology","volume":"10 1","pages":"183-198"},"PeriodicalIF":11.3,"publicationDate":"2023-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41161280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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