{"title":"Reduction of artifacts associated with missing data in coherent diffractive imaging.","authors":"Erik Malm, Yuriy Chushkin","doi":"10.1107/S1600577524010956","DOIUrl":"10.1107/S1600577524010956","url":null,"abstract":"<p><p>Coherent diffractive imaging experiments often collect incomplete datasets containing regions that lack any measurements. These regions can arise because of beamstops, gaps between detectors, or, in tomography experiments, a missing wedge of data due to a limited sample rotation range. We describe practical and effective approaches to mitigate reconstruction artifacts by bringing uniqueness back to the phase retrieval problem. This is accomplished by looking for a solution that both matches the data and has minimum total variation, which essentially sets the unconstrained modes to reduce oscillations within the reconstruction. Two algorithms are described. The first algorithm assumes that there is an accurate estimate of the phase and can be used for pre- and post-processing. The second algorithm attempts to simultaneously minimize the total variation and recover the phase. We demonstrate the utility of these algorithms with numerical simulations and, experimentally, on a large, three-dimensional dataset.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"210-216"},"PeriodicalIF":2.5,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11708845/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142865657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Karina Bzheumikhova, Y Kayser, R Unterumsberger, J Weser, C Stadelhoff, B Beckhoff
{"title":"Enhancing the efficiency of a wavelength-dispersive spectrometer based on a slitless design using a single-bounce monocapillary.","authors":"Karina Bzheumikhova, Y Kayser, R Unterumsberger, J Weser, C Stadelhoff, B Beckhoff","doi":"10.1107/S1600577524010683","DOIUrl":"10.1107/S1600577524010683","url":null,"abstract":"<p><p>This paper introduces a novel slit-less wavelength-dispersive spectrometer design that incorporates a single-bounce monocapillary with the goal of positioning the sample directly on the Rowland circle, thereby eliminating the need for a traditional entrance slit. This configuration enhances photon throughput while preserving energy resolution, demonstrated in comparative measurements on boron nitride and different lithium nickel manganese cobalt oxide cathodes. A common alternative to an entrance slit for limiting the source size on the Rowland circle is a customized design of the beamline involving a focusing optics unit consisting of two Kirkpatrick-Baez mirrors close to the end station. The new slit-less design does not rely on specialized beamlines and can be considered, thanks to the increased efficiency, for spectrometers using laboratory based sources equipped with equivalent optics. The comparative measurements found that the resolving power achieved was E/ΔE = 1085 at 401.5 eV incident energy, and the enhancement in detection efficiency was a factor of 3.7 due to more effective utilization of the X-ray beam.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"171-179"},"PeriodicalIF":2.5,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11708865/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142869769","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Min Woo Kim, Kangwoo Ahn, Chang Hun Lee, Tae Joo Kim, JongYul Kim, Min Su Han, Hyeong Uk Mo, Jina Kim, Hyun Wook Park, Ho Jae Kwak, Jong Hyun Kim
{"title":"The early development of a combined micro- and full-field X-ray fluorescence analysis system using white X-rays at PLS-II.","authors":"Min Woo Kim, Kangwoo Ahn, Chang Hun Lee, Tae Joo Kim, JongYul Kim, Min Su Han, Hyeong Uk Mo, Jina Kim, Hyun Wook Park, Ho Jae Kwak, Jong Hyun Kim","doi":"10.1107/S1600577524011111","DOIUrl":"10.1107/S1600577524011111","url":null,"abstract":"<p><p>X-ray fluorescence (XRF) is widely used to analyze elemental distributions in samples. Micro-XRF (µ-XRF), the most basic conventional XRF technique, offers good spatial resolution through precise 2D scanning with a micrometre-sized X-ray source. Recently, synchrotron based XRF analysis platforms have achieved nano-XRF with highly focused X-rays using polycapillary optics or mirrors, leveraging the excellent coherence of synchrotron radiation. However, XRF techniques are hindered by long data acquisition times (exceeding several hours) due to their point-by-point scanning approach, impeding large-area elemental mapping. Full-field XRF (FF-XRF), developed in the 2010s and based on the high brilliance of synchrotron X-rays, enables significantly shorter (less than a few minutes) data acquisition times via single-exposure imaging using a 2D X-ray detector. Nevertheless, it is constrained by relatively low spatial resolution and sensitivity. Hence, a new XRF platform is required to accommodate resolution demands to cover diverse experimental purposes. In this study, we developed a preliminary model of a novel XRF system that combines micro- and full-field XRF setups to address these limitations. This system allows easy mode switching while maintaining the region of interest of the imaging system within a single apparatus, simply by rotating the sample to face either detector depending on research purposes. We anticipate that this new XRF system will be widely utilized in various research fields as the initial XRF setup at Pohang Light Source-II.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"254-260"},"PeriodicalIF":2.5,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11708863/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142865662","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mustapha Eddah, Henning Markötter, Björn Mieller, Michael Sintschuk, Jörg Beckmann, Giovanni Bruno
{"title":"Mitigation of DMM-induced stripe patterns in synchrotron X-ray radiography through dynamic tilting.","authors":"Mustapha Eddah, Henning Markötter, Björn Mieller, Michael Sintschuk, Jörg Beckmann, Giovanni Bruno","doi":"10.1107/S1600577524008646","DOIUrl":"10.1107/S1600577524008646","url":null,"abstract":"<p><p>In synchrotron X-ray radiography, achieving high image resolution and an optimal signal-to-noise ratio (SNR) is crucial for the subsequent accurate image analysis. Traditional methods often struggle to balance these two parameters, especially in situ applications where rapid data acquisition is essential to capture specific dynamic processes. For quantitative image data analysis, using monochromatic X-rays is essential. A double multilayer monochromator (DMM) is successfully used for this aim at the BAMline, BESSY II (Helmholtz Zentrum Berlin, Germany). However, such DMMs are prone to producing an unstable horizontal stripe pattern. Such an unstable pattern renders proper signal normalization difficult and thereby causes a reduction of the SNR. We introduce a novel approach to enhance SNR while preserving resolution: dynamic tilting of the DMM. By adjusting the orientation of the DMM during the acquisition of radiographic projections, we optimize the X-ray imaging quality, thereby enhancing the SNR. The corresponding shift of the projection during this movement is corrected in post-processing. The latter correction allows a good resolution to be preserved. This dynamic tilting technique enables the homogenization of the beam profile and thereby effectively reduces noise while maintaining high resolution. We demonstrate that data captured using this proposed technique can be seamlessly integrated into the existing radiographic data workflow, as it does not need hardware modifications to classical X-ray imaging beamline setups. This facilitates further image analysis and processing using established methods.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"1551-1560"},"PeriodicalIF":2.5,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542656/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142511020","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Arun J Bhattacharjee, Harrison P Lisabeth, Dilworth Parkinson, Alastair MacDowell
{"title":"Correlative X-ray micro-nanotomography with scanning electron microscopy at the Advanced Light Source.","authors":"Arun J Bhattacharjee, Harrison P Lisabeth, Dilworth Parkinson, Alastair MacDowell","doi":"10.1107/S1600577524009305","DOIUrl":"10.1107/S1600577524009305","url":null,"abstract":"<p><p>Geological samples are inherently multi-scale. Understanding their bulk physical and chemical properties requires characterization down to the nano-scale. A powerful technique to study the three-dimensional microstructure is X-ray tomography, but it lacks information about the chemistry of samples. To develop a methodology for measuring the multi-scale 3D microstructure of geological samples, correlative X-ray micro- and nanotomography were performed on two rocks followed by scanning electron microscopy with energy-dispersive spectroscopy (SEM-EDS) analysis. The study was performed in five steps: (i) micro X-ray tomography was performed on rock sample cores, (ii) samples for nanotomography were prepared using laser milling, (iii) nanotomography was performed on the milled sub-samples, (iv) samples were mounted and polished for SEM analysis and (v) SEM imaging and compositional mapping was performed on micro and nanotomography samples for complimentary information. Correlative study performed on samples of serpentine and basalt revealed multiscale 3D structures involving both solid mineral phases and pore networks. Significant differences in the volume fraction of pores and mineral phases were also observed dependent on the imaging spatial resolution employed. This highlights the necessity for the application of such a multiscale approach for the characterization of complex aggregates such as rocks. Information acquired from the chemical mapping of different phases was also helpful in segmentation of phases that did not exhibit significant contrast in X-ray imaging. Adoption of the protocol used in this study can be broadly applied to 3D imaging studies being performed at the Advanced Light Source and other user facilities.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"1561-1570"},"PeriodicalIF":2.5,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542647/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142523429","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Akhil Tayal, David Scott Coburn, Donald Abel, Max Rakitin, Oksana Ivashkevych, Jakub Wlodek, Dominik Wierzbicki, Weihe Xu, Evgeny Nazaretski, Eli Stavitski, Denis Leshchev
{"title":"Five-analyzer Johann spectrometer for hard X-ray photon-in/photon-out spectroscopy at the Inner Shell Spectroscopy beamline at NSLS-II: design, alignment and data acquisition.","authors":"Akhil Tayal, David Scott Coburn, Donald Abel, Max Rakitin, Oksana Ivashkevych, Jakub Wlodek, Dominik Wierzbicki, Weihe Xu, Evgeny Nazaretski, Eli Stavitski, Denis Leshchev","doi":"10.1107/S1600577524009342","DOIUrl":"10.1107/S1600577524009342","url":null,"abstract":"<p><p>Here, a recently commissioned five-analyzer Johann spectrometer at the Inner Shell Spectroscopy beamline (8-ID) at the National Synchrotron Light Source II (NSLS-II) is presented. Designed for hard X-ray photon-in/photon-out spectroscopy, the spectrometer achieves a resolution in the 0.5-2 eV range, depending on the element and/or emission line, providing detailed insights into the local electronic and geometric structure of materials. It serves a diverse user community, including fields such as physical, chemical, biological, environmental and materials sciences. This article details the mechanical design, alignment procedures and data-acquisition scheme of the spectrometer, with a particular focus on the continuous asynchronous data-acquisition approach that significantly enhances experimental efficiency.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"1609-1621"},"PeriodicalIF":2.5,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542649/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142548456","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chang Zhe Zhao, Hai Peng Zhang, Jie Tang, Ni Xi Zhao, Zhong Liang Li, Ti Qiao Xiao
{"title":"X-ray ghost imaging with a specially developed beam splitter.","authors":"Chang Zhe Zhao, Hai Peng Zhang, Jie Tang, Ni Xi Zhao, Zhong Liang Li, Ti Qiao Xiao","doi":"10.1107/S1600577524008038","DOIUrl":"10.1107/S1600577524008038","url":null,"abstract":"<p><p>X-ray ghost imaging with a crystal beam splitter has advantages in highly efficient imaging due to the simultaneous acquisition of signals from both the object beam and reference beam. However, beam splitting with a large field of view, uniform distribution and high correlation has been a great challenge up to now. Therefore, a dedicated beam splitter has been developed by optimizing the optical layout of a synchrotron radiation beamline and the fabrication process of a Laue crystal. A large field of view, consistent size, uniform intensity distribution and high correlation were obtained simultaneously for the two split beams. Modulated by a piece of copper foam upstream of the splitter, a correlation of 92% between the speckle fields of the object and reference beam and a Glauber function of 1.25 were achieved. Taking advantage of synthetic aperture X-ray ghost imaging (SAXGI), a circuit board of size 880 × 330 pixels was successfully imaged with high fidelity. In addition, even though 16 measurements corresponding to a sampling rate of 1% in SAXGI were used for image reconstruction, the skeleton structure of the circuit board can still be determined. In conclusion, the specially developed beam splitter is applicable for the efficient implementation of X-ray ghost imaging.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"1525-1533"},"PeriodicalIF":2.5,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542653/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142356518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Thomas W Morris, Max Rakitin, Yonghua Du, Mikhail Fedurin, Abigail C Giles, Denis Leshchev, William H Li, Brianna Romasky, Eli Stavitski, Andrew L Walter, Paul Moeller, Boaz Nash, Antoine Islegen-Wojdyla
{"title":"A general Bayesian algorithm for the autonomous alignment of beamlines.","authors":"Thomas W Morris, Max Rakitin, Yonghua Du, Mikhail Fedurin, Abigail C Giles, Denis Leshchev, William H Li, Brianna Romasky, Eli Stavitski, Andrew L Walter, Paul Moeller, Boaz Nash, Antoine Islegen-Wojdyla","doi":"10.1107/S1600577524008993","DOIUrl":"10.1107/S1600577524008993","url":null,"abstract":"<p><p>Autonomous methods to align beamlines can decrease the amount of time spent on diagnostics, and also uncover better global optima leading to better beam quality. The alignment of these beamlines is a high-dimensional expensive-to-sample optimization problem involving the simultaneous treatment of many optical elements with correlated and nonlinear dynamics. Bayesian optimization is a strategy of efficient global optimization that has proved successful in similar regimes in a wide variety of beamline alignment applications, though it has typically been implemented for particular beamlines and optimization tasks. In this paper, we present a basic formulation of Bayesian inference and Gaussian process models as they relate to multi-objective Bayesian optimization, as well as the practical challenges presented by beamline alignment. We show that the same general implementation of Bayesian optimization with special consideration for beamline alignment can quickly learn the dynamics of particular beamlines in an online fashion through hyperparameter fitting with no prior information. We present the implementation of a concise software framework for beamline alignment and test it on four different optimization problems for experiments on X-ray beamlines at the National Synchrotron Light Source II and the Advanced Light Source, and an electron beam at the Accelerator Test Facility, along with benchmarking on a simulated digital twin. We discuss new applications of the framework, and the potential for a unified approach to beamline alignment at synchrotron facilities.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"1446-1456"},"PeriodicalIF":2.5,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542659/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142523427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Michael Berg, Dirk Furrer, Vincent Thominet, Xiaoqiang Wang, Stefan Zeugin, Helmut Grabner, Kurt Stockinger, Cinthia Piamonteze
{"title":"distect: automatic sample-position tracking for X-ray experiments using computer vision algorithms.","authors":"Michael Berg, Dirk Furrer, Vincent Thominet, Xiaoqiang Wang, Stefan Zeugin, Helmut Grabner, Kurt Stockinger, Cinthia Piamonteze","doi":"10.1107/S1600577524009536","DOIUrl":"10.1107/S1600577524009536","url":null,"abstract":"<p><p>Soft X-ray spectroscopy is an important technique for measuring the fundamental properties of materials. However, for measurements of samples in the sub-millimetre range, many experimental setups show limitations. Position drifts on the order of hundreds of micrometres during thermal stabilization of the system can last for hours of expensive beam time. To compensate for drifts, sample tracking and feedback systems must be used. However, in complex sample environments where sample access is very limited, many existing solutions cannot be applied. In this work, we apply a robust computer vision algorithm to automatically track and readjust the sample position in the dozens of micrometres range. Our approach is applied in a complex sample environment, where the sample is in an ultra-high vacuum chamber, surrounded by cooled thermal shields to reach sample temperatures down to 2.5 K and in the center of a superconducting split coil. Our implementation allows sample-position tracking and adjustment in the vertical direction since this is the dimension where drifts occur during sample temperature change in our setup. The approach can be easily extended to 2D. The algorithm enables a factor of ten improvement in the overlap of a series of X-ray absorption spectra in a sample with a vertical size down to 70 µm. This solution can be used in a variety of experimental stations, where optical access is available and sample access by other means is reduced.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"1514-1524"},"PeriodicalIF":2.5,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542654/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142548455","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"In situ/operando method for energy stability measurement of synchrotron radiation.","authors":"Shangyu Si, Zhongliang Li, Lian Xue, Ke Li","doi":"10.1107/S160057752400852X","DOIUrl":"10.1107/S160057752400852X","url":null,"abstract":"<p><p>A novel in situ/operando method is introduced to measure the photon beam stability of synchrotron radiation based on orthogonal diffraction imaging of a Laue crystal/analyzer, which can decouple the energy/wavelength and Bragg angle of the photon beam using the dispersion effect in the diffraction process. The method was used to measure the energy jitter and drift of the photon beam on BL09B and BL16U at the Shanghai Synchrotron Radiation Facility. The experimental results show that this method can provide a fast way to measure the beam stability of different light sources including bending magnet and undulator with meV-level energy resolution and ms-level time response.</p>","PeriodicalId":48729,"journal":{"name":"Journal of Synchrotron Radiation","volume":" ","pages":"1571-1575"},"PeriodicalIF":2.5,"publicationDate":"2024-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11542651/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142478290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}