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DF-1-Derived exosomes mediate transmission of reticuloendotheliosis virus and resist REV-specific antibodies. DF-1衍生的外泌体可介导网状内皮细胞增多症病毒的传播并抵抗REV特异性抗体。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-06 DOI: 10.1186/s12985-024-02445-4
Zhen Wang, Huizhen Cui, Yawen Zhang, Wanli Sun, Wenjie Yang, Peng Zhao
{"title":"DF-1-Derived exosomes mediate transmission of reticuloendotheliosis virus and resist REV-specific antibodies.","authors":"Zhen Wang, Huizhen Cui, Yawen Zhang, Wanli Sun, Wenjie Yang, Peng Zhao","doi":"10.1186/s12985-024-02445-4","DOIUrl":"10.1186/s12985-024-02445-4","url":null,"abstract":"<p><strong>Background: </strong>Reticuloendotheliosis virus (REV), a member of the family Retroviridae, is a hot area of research, and a previous study showed that exosomes purified from REV-positive semen were not blocked by REV-specific neutralizing antibodies and established productive infections.</p><p><strong>Methods: </strong>To further verify the infectivity of exosomes from REV-infected cells, we isolated and purified exosomes from REV-infected DF-1 cells and identified them using Western blot and a transmission electron microscope. We then inoculated 7-day-old embryonated eggs, 1-day-old chicks and 23-week-old hens with and without antibody treatment. REV was administered simultaneously as a control.</p><p><strong>Results: </strong>In the absence of antibodies, the results indicated that REV-exosomes and REV could infect chicks, resulting in viremia and viral shedding, compared with the infection caused by REV, REV-exosomes reduced the hatching rate and increased mortality after hatching, causing severe growth inhibition and immune organ damage in 1-day-old chicks; both REV and REV-exosomes also could infect hens, however, lead to transient infection. In the presence of antibodies, REV-exosomes were not blocked by REV-specific neutralizing antibodies and infected 7-day-old embryonated eggs. However, REV could not infect 1-day-old chicks and 23-week-old hens.</p><p><strong>Conclusion: </strong>In this study, we compared the infectious ability of REV-exosomes and REV, REV-exosomes could escape from REV-specific neutralizing antibodies in embryonated eggs, providing new insights into the immune escape mechanism of REV.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11304787/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141898373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterizing the splice map of Turkey Hemorrhagic Enteritis Virus. 确定土耳其出血性肠炎病毒的剪接图谱。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-06 DOI: 10.1186/s12985-024-02449-0
Abraham Quaye, Brett E Pickett, Joel S Griffitts, Bradford K Berges, Brian D Poole
{"title":"Characterizing the splice map of Turkey Hemorrhagic Enteritis Virus.","authors":"Abraham Quaye, Brett E Pickett, Joel S Griffitts, Bradford K Berges, Brian D Poole","doi":"10.1186/s12985-024-02449-0","DOIUrl":"10.1186/s12985-024-02449-0","url":null,"abstract":"<p><strong>Background: </strong>Hemorrhagic enteritis, caused by Turkey Hemorrhagic Enteritis Virus (THEV), is a disease affecting turkey poults characterized by immunosuppression and bloody diarrhea. An avirulent THEV strain that retains the immunosuppressive ability is used as a live vaccine. Characterizing the splice map of THEV is an essential step that would allow studies of individual genes mediating its immunosuppressive functions. We used RNA sequencing to characterize the splice map of THEV for the first time, providing key insights into the THEV gene expression and mRNA structures.</p><p><strong>Methods: </strong>After infecting a turkey B-cell line with the vaccine strain, samples in triplicates were collected at 4-, 12-, 24-, and 72-hours post-infection. Total RNA was extracted, and poly-A-tailed mRNA sequenced. Reads were mapped to the THEV genome after trimming and transcripts assembled with StringTie. We performed PCR of THEV cDNA, cloned the PCR products, and used Sanger sequencing to validate all identified splice junctions.</p><p><strong>Results: </strong>Researchers previously annotated the THEV genome as encoding 23 open reading frames (ORFs). We identified 29 spliced transcripts from our RNA sequencing data, all containing novel exons although some exons matched some previously annotated ORFs. The three annotated splice junctions were also corroborated by our data. During validation we identified five additional unique transcripts, a subset of which were further validated by 3' rapid amplification of cDNA ends (3' RACE). Thus, we report that the genome of THEV contains 34 transcripts with the coding capacity for all annotated ORFs. However, we found six of the previously annotated ORFs to be truncated ORFs on the basis of the identification of an in-frame upstream start codon or the detection of additional coding exons. We also identified three of the annotated ORFs with longer or shorter isoforms, and seven novel unannotated ORFs that could potentially be translated; although it is beyond the scope of this manuscript to investigate whether they are translated.</p><p><strong>Conclusions: </strong>Similar to human adenoviruses, all THEV transcripts are spliced and organized into five transcription units under the control of their cognate promoters. The genes are expressed under temporal regulation and THEV also produces multiple distinctly spliced transcripts that code for the same protein. Studies of the newly identified potential proteins should be urgently performed as these proteins may have roles in THEV-induced immunosuppression. Also, knowing the splicing of THEV genes should be invaluable to future research focusing on studying THEV genes, as this will allow accurate cloning of the mRNAs.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11304566/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141898372","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Grapevine Pinot gris virus spreads in infected vineyards: latent infections have no direct impact on grape production. 葡萄灰皮诺病毒在受感染的葡萄园中传播:潜伏感染对葡萄生产没有直接影响。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-06 DOI: 10.1186/s12985-024-02453-4
Noemi Messmer, Patricia Bohnert, Lars Askani, Stefan Schumacher, Ralf T Voegele, René Fuchs
{"title":"Grapevine Pinot gris virus spreads in infected vineyards: latent infections have no direct impact on grape production.","authors":"Noemi Messmer, Patricia Bohnert, Lars Askani, Stefan Schumacher, Ralf T Voegele, René Fuchs","doi":"10.1186/s12985-024-02453-4","DOIUrl":"10.1186/s12985-024-02453-4","url":null,"abstract":"<p><strong>Background: </strong>Grapevine Pinot gris virus (GPGV) infects grapevines worldwide and causes symptoms such as chlorotic mottling and deformations on leaves, stunted shoots and short panicles, or none of these symptoms if it appears as latent infection. So far, the consequences of GPGV infections for winegrowers are difficult to assess since important information such as plant performance at different GPGV infection levels and symptom expression are not fully clarified.</p><p><strong>Methods: </strong>In order to investigate the course of GPGV spread, annual visual evaluations and ELISA tests were conducted over 3-4 consecutive years in four GPGV-infected vineyards in southern Germany: GEM, HEC, NIM, and REI. The program PATCHY was used to analyze spatial disease patterns. Sanger sequencing was used to determine virus isolates in vines at different GPGV infection levels, to test their respective influence on symptom expression. Yield and GrapeScan (FTIR) analyses were conducted to test the impact of different GPGV infection levels and isolates on fruit quantity and quality.</p><p><strong>Results: </strong>GPGV infections significantly increased in all four vineyards (GEM 22-32%, HEC 50-99%, NIM 83-90%, REI 56-76%) with significant spreading patterns across and along rows. Specific symptom progression patterns were not observed. According to our results, the virus isolate has an influence on whether symptoms develop during a GPGV infection. While yield analyses revealed that yield losses only occur in symptomatic vines and range from 13 to 96% depending on the severity of symptoms, latent infections have no impact on grape production. No relevant effects of GPGV infections on must quality were observed.</p><p><strong>Conclusions: </strong>Secondary spread of GPGV was observed in all vineyards monitored, indicating vector-borne transmission that is likely to be accelerated by human viticultural management. GPGV should be further monitored to prevent the accumulation of detrimental symptomatic isolates. The results of this study can be used to assess the risk of GPGV to viticulture and should be considered when developing management strategies against the virus.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11304625/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141898375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High-risk human papillomavirus infection and cervical cytopathology: relationship with cervical nitric oxide levels. 高危人类乳头瘤病毒感染与宫颈细胞病理学:与宫颈一氧化氮水平的关系。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-02 DOI: 10.1186/s12985-024-02435-6
Doaa Mahdy El-Wakil, Olfat G Shaker, Ahmed S S A Rashwan, Yasmine Fathy Elesawy, Nermin Samir
{"title":"High-risk human papillomavirus infection and cervical cytopathology: relationship with cervical nitric oxide levels.","authors":"Doaa Mahdy El-Wakil, Olfat G Shaker, Ahmed S S A Rashwan, Yasmine Fathy Elesawy, Nermin Samir","doi":"10.1186/s12985-024-02435-6","DOIUrl":"10.1186/s12985-024-02435-6","url":null,"abstract":"<p><strong>Background: </strong>Nitric oxide (NO) may contribute to the persistence of high-risk human papillomavirus (hrHPV) infection, which has been linked to the development of premalignant lesions and cervical cancer. Our study aimed to examine the relationship between cervical NO metabolite (NOx) levels, hrHPV infection, and cytopathological findings. Additionally, we assessed cervical NOx levels as a biomarker for predicting hrHPV infection and epithelial atypia.</p><p><strong>Methods: </strong>The study involved 74 women who attended the Gynecology and Obstetrics outpatient clinics at Cairo University Hospitals between November 2021 and August 2022. Cervical samples were subjected to Pap testing, assessment of NOx levels by the Griess method, and detection of hrHPV DNA by real-time polymerase chain reaction.</p><p><strong>Results: </strong>High-risk HPV was detected in 37.8% of women. EA was found in 17.1% of cases, with a higher percentage among hrHPV-positive than negative cases (35.7% vs. 4.3%, p = 0.001). The most prevalent hrHPV genotype was HPV 16 (89.3%). The cervical NOx level in hrHPV-positive cases was significantly higher (37.4 µmol/mL, IQR: 34.5-45.8) compared to negative cases (2.3 µmol/mL, IQR: 1.2-9.8) (p = < 0.001). Patients with high-grade atypia showed significantly higher NOx levels (38.0 µmol/mL, IQR: 24.6-94.7) in comparison to NILM and low-grade atypia cases (5.0 µmol/mL, IQR: 1.6-33.3 and 34.5 µmol/mL, IQR: 11.7-61.7, respectively) (p = 0.006). Although the NOx levels among hrHPV-positive cases with low-grade atypia (40.4 µmol/mL, IQR: 33.3‒61.8) were higher than those with NILM (36.2 µmol/mL, IQR: 35.7‒44.0) and high-grade atypia (38.0 µmol/mL, IQR: 24.6‒94.7), the difference was not significant (p = 0.771). ROC curve analysis indicated that the cervical NOx cut-off values of > 23.61 µmol/mL and > 11.35 µmol/mL exhibited good diagnostic accuracy for the prediction of hrHPV infection and EA, respectively.</p><p><strong>Conclusions: </strong>The high prevalence of hrHPV infection, particularly HPV 16, in our hospital warrants targeted treatment and comprehensive screening. Elevated cervical NOx levels are associated with hrHPV infection and high-grade atypia, suggesting their potential use as biomarkers for predicting the presence of hrHPV and abnormal cytological changes.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11297640/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141879553","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Manipulating host secreted protein gene expression: an indirect approach by HPV11/16 E6/E7 to suppress PBMC cytokine secretion. 操纵宿主分泌蛋白基因表达:HPV11/16 E6/E7 抑制 PBMC 细胞因子分泌的间接方法。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-02 DOI: 10.1186/s12985-024-02432-9
Mei-Zhen Zhong, Mei-Nian Xu, Si-Qi Zheng, Shu-Qiong Cheng, Kang Zeng, Xiao-Wen Huang
{"title":"Manipulating host secreted protein gene expression: an indirect approach by HPV11/16 E6/E7 to suppress PBMC cytokine secretion.","authors":"Mei-Zhen Zhong, Mei-Nian Xu, Si-Qi Zheng, Shu-Qiong Cheng, Kang Zeng, Xiao-Wen Huang","doi":"10.1186/s12985-024-02432-9","DOIUrl":"10.1186/s12985-024-02432-9","url":null,"abstract":"<p><p>Human papillomavirus (HPV) 11/16 E6/E7 proteins have been recognized to be pivotal in viral pathogenesis. This study sought to uncover the potential mechanisms of how HPV11/16 E6/E7-transfected keratinocytes inhibit cytokine secretion in peripheral blood mononuclear cells (PBMC). Upon co-culturing HPV11/16 E6/E7-transfected keratinocytes with PBMC in a non-contact manner, we observed a marked decrease in various cytokines secreted by PBMC. To determine if this suppression was mediated by specific common secreted factors, we conducted transcriptomic sequencing on these transfected cells. This analysis identified 53 common differentially secreted genes in all four HPV-transfected cells. Bioinformatics analysis demonstrated these genes were predominantly involved in immune regulation. Results from quantitative PCR (qPCR) and an extensive literature review suggested the downregulation of 12 genes (ACE2, BMP3, BPIFB1, CLU, CST6, CTF1, HMGB2, MMP12, PDGFA, RNASE7, SULF2, TGM2), and upregulation of 7 genes (CCL17, CCL22, FBLN1, PLAU, S100A7, S100A8, S100A9), may be crucial in modulating tumor immunity and combating pathogenic infections, with genes S100A8 and S100A9, and IL-17 signaling pathway being particularly noteworthy. Thus, HPV11/16 E6/E7 proteins may inhibit cytokine secretion of immune cells by altering the expression of host-secreted genes. Further exploration of these genes may yield new insights into the complex dynamics of HPV infection.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11295672/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141879554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: Rapid detection of avian influenza virus based on CRISPR-Cas12a. 更正:基于 CRISPR-Cas12a 的禽流感病毒快速检测。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-02 DOI: 10.1186/s12985-024-02436-5
Xu Zhou, Siwen Wang, Yue Ma, Yanbing Li, Guohua Deng, Jianzhong Shi, Xiurong Wang
{"title":"Correction: Rapid detection of avian influenza virus based on CRISPR-Cas12a.","authors":"Xu Zhou, Siwen Wang, Yue Ma, Yanbing Li, Guohua Deng, Jianzhong Shi, Xiurong Wang","doi":"10.1186/s12985-024-02436-5","DOIUrl":"10.1186/s12985-024-02436-5","url":null,"abstract":"","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11297781/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141879552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Use of strips of rapid diagnostic tests as a source of ribonucleic acid for genomic surveillance of viruses: an example of SARS-CoV-2. 使用快速诊断检测条作为病毒基因组监测的核糖核酸来源:以 SARS-CoV-2 为例。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-01 DOI: 10.1186/s12985-024-02442-7
Alpha Kabiné Keita, Aminata Mbaye, Abdoul Karim Soumah, Kadio Jean Jacques Olivier Kadio, Haby Diallo, Thibaut Armel Chérif Gnimadi, Joel Balla Koivogui, Moriba Kowa Povogui, Jean Louis Monemou, Baba Traore, Nicole Vidal, Emilande Guichet, Ahidjo Ayouba, Eric Delaporte, Martine Peeters, Abdoulaye Toure, Alpha Kabinet Keita
{"title":"Use of strips of rapid diagnostic tests as a source of ribonucleic acid for genomic surveillance of viruses: an example of SARS-CoV-2.","authors":"Alpha Kabiné Keita, Aminata Mbaye, Abdoul Karim Soumah, Kadio Jean Jacques Olivier Kadio, Haby Diallo, Thibaut Armel Chérif Gnimadi, Joel Balla Koivogui, Moriba Kowa Povogui, Jean Louis Monemou, Baba Traore, Nicole Vidal, Emilande Guichet, Ahidjo Ayouba, Eric Delaporte, Martine Peeters, Abdoulaye Toure, Alpha Kabinet Keita","doi":"10.1186/s12985-024-02442-7","DOIUrl":"10.1186/s12985-024-02442-7","url":null,"abstract":"<p><strong>Background: </strong>This study aimed to demonstrate that the genomic material of SARS-CoV-2 can be isolated from strips of COVID-19 rapid diagnostic test cassettes.</p><p><strong>Method: </strong>It was a prospective cross-sectional study involving patients admitted to treatment centers and sampling sites in the city of Conakry, Guinea. A total of 121 patients were double sampled, and 9 more patients were tested only for RDT. PCR was conducted according to the protocol of the RunMei kit. Sequencing was performed by using the illumina COVIDSeq protocol. Nine COVID-19 RDTs without nasopharyngeal swabs were in addition tested.</p><p><strong>Result: </strong>Among the 130 COVID-19 RDTs, forty-seven were macroscopically positive, whereas seventy-two were positive according to PCR using RDT strip, while among the 121 VTM swabs, sixty-four were positive. Among eighty-three negative COVID-19 RDTs, twenty-seven were positive by PCR using RDT strip with a geometric mean Ct value of 32.49 cycles. Compared to those of PCR using VTM, the sensitivity and specificity of PCR using RDT strip were estimated to be 100% and 85.96%, respectively, with 93.39% test accuracy. Among the fifteen COVID-19 RDT extracts eligible for sequencing, eleven had sequences identical to those obtained via the standard method, with coverage between 75 and 99.6%.</p><p><strong>Conclusion: </strong>These results show that COVID-19 RDTs can be used as biological material for the genomic surveillance of SARS-CoV-2.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11295317/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141876143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Analysis of host factor networks during hepatitis B virus infection in primary human hepatocytes. 分析原代人类肝细胞感染乙型肝炎病毒期间的宿主因子网络。
IF 4 3区 医学
Virology Journal Pub Date : 2024-08-01 DOI: 10.1186/s12985-024-02446-3
Suhyun Hwangbo, Gahee Kim, Yongwook Choi, Yong Kwang Park, Songmee Bae, Jae Yong Ryu, Wonhee Hur
{"title":"Analysis of host factor networks during hepatitis B virus infection in primary human hepatocytes.","authors":"Suhyun Hwangbo, Gahee Kim, Yongwook Choi, Yong Kwang Park, Songmee Bae, Jae Yong Ryu, Wonhee Hur","doi":"10.1186/s12985-024-02446-3","DOIUrl":"10.1186/s12985-024-02446-3","url":null,"abstract":"<p><strong>Background: </strong>Chronic hepatitis B virus (HBV) infection affects around 250 million people worldwide, causing approximately 887,000 deaths annually, primarily owing to cirrhosis and hepatocellular carcinoma (HCC). The current approved treatments for chronic HBV infection, such as interferon and nucleos(t)ide analogs, have certain limitations as they cannot completely eradicate covalently closed circular DNA (cccDNA). Considering that HBV replication relies on host transcription factors, focusing on host factors in the HBV genome may provide insights into new therapeutic targets against HBV. Therefore, understanding the mechanisms underlying viral persistence and hepatocyte pathogenesis, along with the associated host factors, is crucial. In this study, we investigated novel therapeutic targets for HBV infection by identifying gene and pathway networks involved in HBV replication in primary human hepatocytes (PHHs). Importantly, our study utilized cultured primary hepatocytes, allowing transcriptomic profiling in a biologically relevant context and enabling the investigation of early HBV-mediated effects.</p><p><strong>Methods: </strong>PHHs were infected with HBV virion particles derived from HepAD38 cells at 80 HBV genome equivalents per cell (Geq/cell). For transcriptomic sequencing, PHHs were harvested 1, 2-, 3-, 5-, and 7 days post-infection (dpi). After preparing the libraries, clustering and sequencing were conducted to generate RNA-sequencing data. This data was processed using Bioinformatics tools and software to analyze DEGs and obtain statistically significant results. Furthermore, qRT-PCR was performed to validate the RNA-sequencing results, ensuring consistent findings.</p><p><strong>Results: </strong>We observed significant alterations in the expression patterns of 149 genes from days 1 to 7 following HBV infection (R<sup>2</sup> > 0.7, q < 0.05). Functional analysis of these genes identified RNA-binding proteins involved in mRNA metabolism and the regulation of alternative splicing during HBV infection. Results from qRT-PCR experiments and the analysis of two validation datasets suggest that RBM14 and RPL28 may serve as potential biomarkers for HBV-associated HCC.</p><p><strong>Conclusions: </strong>Transcriptome analysis of gene expression changes during HBV infection in PHHs provided valuable insights into chronic HBV infection. Additionally, understanding the functional involvement of host factor networks in the molecular mechanisms of HBV replication and transcription may facilitate the development of novel strategies for HBV treatment.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11295519/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141876142","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Highly homologous simian T-cell leukemia virus type 1 genome in Japanese macaques: a large cohort study. 日本猕猴中高度同源的 1 型猿 T 细胞白血病病毒基因组:一项大型队列研究。
IF 4 3区 医学
Virology Journal Pub Date : 2024-07-30 DOI: 10.1186/s12985-024-02434-7
Kou Hiraga, Tomoya Kitamura, Madoka Kuramitsu, Megumi Murata, Kenta Tezuka, Kazu Okuma, Isao Hamaguchi, Hirofumi Akari, Takuo Mizukami
{"title":"Highly homologous simian T-cell leukemia virus type 1 genome in Japanese macaques: a large cohort study.","authors":"Kou Hiraga, Tomoya Kitamura, Madoka Kuramitsu, Megumi Murata, Kenta Tezuka, Kazu Okuma, Isao Hamaguchi, Hirofumi Akari, Takuo Mizukami","doi":"10.1186/s12985-024-02434-7","DOIUrl":"10.1186/s12985-024-02434-7","url":null,"abstract":"<p><strong>Background: </strong>Simian T-cell leukemia virus type 1 (STLV-1) is a retrovirus closely related to human T-cell leukemia virus type 1 (HTLV-1), the causative agent of adult T-cell leukemia (ATL). It has been shown that Japanese macaques (Macaca fuscata, JMs) are one of the main hosts of STLV-1 and that a high percentage of JMs (up to 60%) are infected with STLV-1; however, the molecular epidemiology of STLV-1 in JMs has not been examined.</p><p><strong>Methods: </strong>In this study, we analyzed full-length STLV-1 genome sequences obtained from 5 independent troops including a total of 68 JMs.</p><p><strong>Results: </strong>The overall nucleotide heterogeneity was 4.7%, and the heterogeneity among the troops was 2.1%, irrespective of the formation of distinct subclusters in each troop. Moreover, the heterogeneity within each troop was extremely low (>99% genome homology) compared with cases of STLV-1 in African non-human primates as well as humans. It was previously reported that frequent G-to-A single-nucleotide variants (SNVs) occur in HTLV-1 proviral genomes in both ATL patients and HTLV-1 carriers, and that a G-to-A hypermutation is associated with the cellular antiviral restriction factor, Apobec3G. Surprisingly, these SNVs were scarcely observed in the STLV-1 genomes in JMs.</p><p><strong>Conclusions: </strong>Taken together, these results indicate that STLV-1 genomes in JMs are highly homologous, at least in part due to the lack of Apobec3G-dependent G-to-A hypermutation.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11290215/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141856627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correlation between viral infections in male semen and infertility: a literature review. 男性精液中的病毒感染与不育之间的相关性:文献综述。
IF 4 3区 医学
Virology Journal Pub Date : 2024-07-30 DOI: 10.1186/s12985-024-02431-w
Yan Guo, Yunhua Dong, Runzi Zheng, Jiacong Yan, Weiyuan Li, Ya Xu, Xuelan Yan, Yunmei Ke, Yantao Li, Lifeng Xiang
{"title":"Correlation between viral infections in male semen and infertility: a literature review.","authors":"Yan Guo, Yunhua Dong, Runzi Zheng, Jiacong Yan, Weiyuan Li, Ya Xu, Xuelan Yan, Yunmei Ke, Yantao Li, Lifeng Xiang","doi":"10.1186/s12985-024-02431-w","DOIUrl":"10.1186/s12985-024-02431-w","url":null,"abstract":"<p><p>Infertility affects approximately one-sixth of couples globally, with the incidence of male infertility steadily increasing. However, our understanding of the impact of viral infections on fertility remains limited. This review consolidates findings from previous studies, outlining 40 viruses identified in human semen and summarizing their key characteristics, modes of transmission, and their effects on both the reproductive and endocrine systems. Furthermore, it elucidates potential pathogenic mechanisms and treatment prospects of viruses strongly associated with male infertility. This synthesis will enhance our comprehension of how viral infections influence male reproductive health, offering valuable insights for future research as well as the diagnosis and treatment of infectious infertility.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11290048/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141856584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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