{"title":"Functional analysis of <i>ZmPHR1</i> and <i>ZmPHR2</i> under low-phosphate stress in maize.","authors":"Hongmei Hu, Yikai Wang, Haixu Zhong, Binyang Li, Jingxiao Qi, Yarong Wang, Jin Liu, Shuhao Zhang, Haiying Zhang, Bowen Luo, Xiao Zhang, Zhi Nie, Hongkai Zhang, Duojiang Gao, Shiqiang Gao, Dan Liu, Ling Wu, Shibin Gao","doi":"10.1007/s11032-024-01508-2","DOIUrl":"10.1007/s11032-024-01508-2","url":null,"abstract":"<p><p>The PHOSPHATE STARVATION RESPONSE REGULATOR (PHR) plays a crucial regulatory role in plants during the process of responding to phosphate starvation. In this study, we combined reverse genetics and biotechnology to investigate the function of <i>ZmPHR1</i> and <i>ZmPHR2</i>, including proteins containing the Myb_DNA_banding and Myb_CC-LHEQLE structural domains, in maize seedlings. Phylogenetic analysis revealed that <i>ZmPHR1</i> and <i>ZmPHR2</i> have high homology with <i>AtPHR1</i> and <i>OsPHR2</i>, and share the characteristic features of nuclear localisation and transcriptional self-activation. Real-time quantitative PCR analysis showed that low phosphate (Pi) stress significantly induced the expression of <i>ZmPHR1</i> and <i>ZmPHR2</i> in maize seedling stage, and candidate gene association analysis further revealed the close association of these two genes with root traits under Pi stress conditions. Transgenic plants overexpressing <i>ZmPHR1</i> and <i>ZmPHR2</i> in <i>Arabidopsis</i> show a significant increase in lateral root number, fresh weight and total phosphorus accumulation under low-Pi stress. Besides, CHIP-PCR experiments identified target genes involved in hormone regulation, metal ion transport and homeostasis, phosphatase encoding, and photosynthesis, providing new insights into the biological functions of <i>ZmPHR1</i> and <i>ZmPHR2</i>. Furthermore, our study showed that ZmPHR1 interacts with six SPX domain-only proteins (ZmSPXs) in maize, while ZmPHR2 interacts with five of these proteins. <i>ZmPHR1</i> and <i>ZmPHR2</i> expression was repressed in low Pi conditions, but was up-regulated in <i>ZmSPX1</i> knockout material, according to our study of transgenic seedlings overexpressing <i>ZmSPX1</i> in maize. We identified downstream target genes involved in the phosphorus signaling pathway, which are mainly involved in plant-pathogen interactions, ascorbic acid and arabinose metabolism, and ABC transporter proteins, by RNA-seq analysis of transgenic seedlings grown under low Pi stress for 7 days. Collectively, these results provide important clues to elucidate the role and functional significance of <i>ZmPHR1</i> and <i>ZmPHR2</i> under low Pi stress and also provide insights into understand the molecular mechanism of phosphorus homeostasis in maize.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11032-024-01508-2.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"44 10","pages":"69"},"PeriodicalIF":2.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11442720/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142365815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Molecular BreedingPub Date : 2024-09-30eCollection Date: 2024-10-01DOI: 10.1007/s11032-024-01503-7
Xutao Zhao, Lingxiong Zan, Niaofei He, Haidong Liu, Xiaorong Xing, Dezhi Du, Guoyong Tang, Kaixiang Li
{"title":"<i>BnaC09.tfl1</i> controls determinate inflorescence trait in <i>Brassica napus</i>.","authors":"Xutao Zhao, Lingxiong Zan, Niaofei He, Haidong Liu, Xiaorong Xing, Dezhi Du, Guoyong Tang, Kaixiang Li","doi":"10.1007/s11032-024-01503-7","DOIUrl":"10.1007/s11032-024-01503-7","url":null,"abstract":"<p><p>Determinate inflorescence is indeed a pivotal agricultural characteristic in crops, notably impacting the architecture modification of <i>Brassica napus</i> (AACC, 2n = 38). Previous study identified a crucial gene <i>Bnsdt2</i> that encodes the transcription factor <i>BnaC09.TFL1</i> (<i>Terminal Flower 1</i>). Here by two alleles were cloned and sequenced from indeterminate 2982 and determinate 4769, respectively, we found that <i>BnaC09.TFL1</i> harbors two T/C and G/C non-synonymous mutations in exon 1, and contains sixty-six differences in a 1.9 Kb promoter sequence. Subsequently, <i>BnaC09.TFL1</i> was introduced into <i>B. napus</i> 571 line by genetic complementation and overexpression, transgenic plants 571<sup>CTO</sup> lines and 571<sup>TC</sup>lines were all restored to the indeterminate inflorescence. Interestingly, after <i>BnaC09.TFL1</i> was knocked out in 'Westar', transgenic plants Westar<sup>Tcr</sup> lines were mutated to determinate inflorescences. Additionally, a NIL-4769 line was constructed to evaluate the effect of <i>BnaC09.TFL1</i> on agronomic traits of <i>Brassica napus</i>, the results demonstrated that <i>BnaC09.tfl1</i> reduced the plant height and increased the branch number and branch thousand grain weight of <i>Brassica napus.</i> Finally, we performed RT-qPCR, GUS staining and subcellular localization experiments to analyze the expression pattern of <i>BnaC09.TFL1</i>, the results showed that the expression of <i>BnaC09.TFL1</i> at shoot apex of NIL-4769 was higher than that of 4769, GUS activity was detected at apical of <i>Arabidopsis thaliana</i> and <b><i>BnC09.TFL1-GFP</i></b> was detected in cell membrane, nucleus and cytoplasm. Our findings provide a firm molecular foundation for the study of rapeseed's molecular mechanism of determinate inflorescence formation, as well as theoretical guidance for the application of determinate inflorescence in rapeseed breeding.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11032-024-01503-7.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"44 10","pages":"68"},"PeriodicalIF":2.6,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11439857/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350344","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Molecular BreedingPub Date : 2024-09-27eCollection Date: 2024-10-01DOI: 10.1007/s11032-024-01504-6
Haisu Li, Irfan Ullah Khan, Mahdi Badri Anarjan, Muhammad Hussain, Sanghyeob Lee
{"title":"The mutant STAY-GREEN (<i>Cssgr</i>) in cucumber interacts with the CSEP30 protein to elicit a defense response against <i>Podosphaera xanthii</i>.","authors":"Haisu Li, Irfan Ullah Khan, Mahdi Badri Anarjan, Muhammad Hussain, Sanghyeob Lee","doi":"10.1007/s11032-024-01504-6","DOIUrl":"10.1007/s11032-024-01504-6","url":null,"abstract":"<p><p>Disease-resistant plants activate immune responses by specifically recognition Candidate Secreted Effector Proteins (CSEPs) through resistance (R) proteins. In research on cucumber powdery mildew resistance breeding, several R genes and CSEPs have been identified; however, the specific interactions between R proteins and CSEPs are still largely unexplored. In this study, we used a luciferase reporter assay to identify six CSEPs from <i>Podosphaera xanthii</i> that potentially induce cell death in cucumber. Subsequent yeast two-hybrid analysis revealed that only the mature form of CSEP30 (CSEP30<sup>∆SP</sup>) interacted with the cucumber mutant STAY-GREEN (<i>Cssgr</i>), a gene previously recognized for its broad-spectrum resistance in genetic studies. This interaction was confirmed using pull-down and co-immunoprecipitation assays. Additionally, to determine if the interaction leads to phenotypic changes, Cssgr and CSEP30<sup>∆SP</sup> were transiently expressed in tobacco leaves. The infiltration of Cssgr in tobacco resulted in reduced chlorosis compared to the wild-type CsSGR. Co-infiltration of Cssgr with CSEP30<sup>∆SP</sup> induced distinct dry necrotic lesions, contrasting the effects observed when Cssgr and CSEP30<sup>∆SP</sup> were infiltrated separately. Additionally, after <i>P. xanthii</i> infection in moderately powdery mildew-resistant Gy14 cucumber, similar necrotic lesions and specific expression of <i>Cssgr</i>, as along with defense response-related genes (<i>CsPR1 and CsLecRK6.1</i>), were observed. This study suggests that the interaction between Cssgr and CSEP30<sup>∆SP</sup> could trigger cell death and defense response, offering new insights into the molecular function of Cssgr in disease resistance in Gy14 cucumber.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11032-024-01504-6.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"44 10","pages":"67"},"PeriodicalIF":2.6,"publicationDate":"2024-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11436540/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Molecular BreedingPub Date : 2024-09-23eCollection Date: 2024-10-01DOI: 10.1007/s11032-024-01505-5
Ling Jiang, Yuanwei Chen, Hong Zhou, Jianyu Zhu, Xiaofeng Yang, Mu Xiao
{"title":"Xiangchun 37, a spring soybean variety with multiplexed traits of medium maturity period, high yield, and high seed oil content.","authors":"Ling Jiang, Yuanwei Chen, Hong Zhou, Jianyu Zhu, Xiaofeng Yang, Mu Xiao","doi":"10.1007/s11032-024-01505-5","DOIUrl":"https://doi.org/10.1007/s11032-024-01505-5","url":null,"abstract":"<p><p>Soybean is an indispensable crop producing the majority of vegetative oils and proteins. China has been importing millions of ton of soy beans in recent years. Developing new varieties with favorable traits in both yield and resilience has great potential to meet the market needs in China. In this study, we bred a new variety (Xiangchun 37) which has been licensed by Ministry of Agriculture and Rural Affairs of the People's Republic of China in 2024. In the field tests, Xiangchun 37 showed medium maturity period (107.4 days from sowing to harvest), high yield (187.3 kg/667m<sup>2</sup>), and high seed oil content (22.19%). Overall assessment showed Xiangchun 37 had other favorable traits including the plant architecture and disease resistance. In conclusion, Xiangchun 37 is a new variety suitable for Hunan Province, China and has promising future for further genetic improvement as a germplasm with multiple favorable traits.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11032-024-01505-5.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"44 10","pages":"66"},"PeriodicalIF":2.6,"publicationDate":"2024-09-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11420398/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Molecular BreedingPub Date : 2024-09-20eCollection Date: 2024-10-01DOI: 10.1007/s11032-024-01507-3
Xiaoguang Zhao, Shihao Wei, Liang Chai, Xuan Wang
{"title":"Qinzayou 7, a new rapeseed variety with high linolenic acid content.","authors":"Xiaoguang Zhao, Shihao Wei, Liang Chai, Xuan Wang","doi":"10.1007/s11032-024-01507-3","DOIUrl":"10.1007/s11032-024-01507-3","url":null,"abstract":"","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"44 10","pages":"65"},"PeriodicalIF":2.6,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11413266/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142291405","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Identification and mapping of late blight resistance QTLs in the wild tomato accession PI 224710 (Solanum pimpinellifolium)","authors":"Sihui Gao, Majid R. Foolad","doi":"10.1007/s11032-024-01498-1","DOIUrl":"https://doi.org/10.1007/s11032-024-01498-1","url":null,"abstract":"<p>Late blight (LB), caused by oomycete <i>Phytophthora infestans</i>, is one of the most destructive diseases of the cultivated tomato, <i>Solanum lycopersicum</i>. Since new and aggressive clonal lineages of <i>P. infestans</i>, many of which overcoming formerly effective fungicides or host resistance genes, have continued to emerge, it is crucial to identify, characterize, and utilize new sources of host resistance in tomato breeding. A recent screening of tomato germplasm identified <i>Solanum pimpinellifolium</i> accession PI 224710 with very strong resistance to several current <i>P. infestans</i> clonal lineages. The present study aimed to identify and characterize QTLs associated with LB resistance in PI 224710. Disease screening of a large F<sub>2</sub> population (<i>n</i> = 1721), derived from a cross between PI 224710 and LB-susceptible tomato breeding line Fla. 8059, followed by F<sub>3</sub> progeny testing, resulted in the identification of 43 highly-resistant and 27 highly-susceptible F<sub>2</sub> individuals. A selective genotyping approach, using 469 non-identical SNP markers, resulted in the construction of a genetic linkage map and identification of three LB-resistance QTLs on chromosomes 6, 9 and 10 of PI 224710. A comparison of the QTLs genomic locations with the tomato physical map resulted in the identification of several candidate genes, which might be underpinning the LB-resistance QTLs in PI 224710. The identified markers associated with the LB-resistance QTLs can be utilized in breeding programs to transfer resistance from PI 224710 into tomato breeding lines and hybrid cultivars via marker-assisted breeding; they also can be used to develop near-isogenic lines for fine mapping of the QTLs.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"1 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142259484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Qingqing Chu, Xingxian Fu, Juan Zhao, Yuxin Li, Lina Liu, Liuqin Zhang, Yujie Zhang, Yifan Guo, Yan Pei, Mi Zhang
{"title":"Simultaneous improvement of fiber yield and quality in upland cotton (Gossypium hirsutum L.) by integration of auxin transport and synthesis","authors":"Qingqing Chu, Xingxian Fu, Juan Zhao, Yuxin Li, Lina Liu, Liuqin Zhang, Yujie Zhang, Yifan Guo, Yan Pei, Mi Zhang","doi":"10.1007/s11032-024-01500-w","DOIUrl":"https://doi.org/10.1007/s11032-024-01500-w","url":null,"abstract":"<p>Cotton is a widely planted commercial crop in the world. Enhancing fiber yield and quality is a long-term goal for cotton breeders. Our previous work has demonstrated that fine promotion of auxin biosynthesis in ovule epidermis, by overexpressing <i>FBP7pro::iaaM</i>, has a significant improvement on lint yield and fiber fineness. Lately, transgenic cottons overexpressing <i>GhROP6</i> variants modify mature fiber length by controlling GhPIN3a-mediated polar auxin transport in ovules. Here, this study showed that all these <i>GhROP6-</i>related cottons displayed unsatisfactory agronomic performance in field conditions. Yet extra auxin supply could promote their fiber development, suggesting inadequate auxin supply in the ovules. Thus, these cottons were integrated with enhanced auxin synthesis by crossing with <i>FBP7pro::iaaM</i> cotton. All the transgene-stacked cottons exhibited synergetic effects on cotton yield (seedcotton yield, lint yield, and lint percentage) and quality (length, strength, and micronaire). Notably, comparing to the <i>FBP7pro::iaaM</i> background, the transgene-stacked cotton co-expressing <i>FBP7pro::iaaM</i> and <i>CA-ghrop6</i> (constitutively active <i>GhROP6</i>) exhibited a 12.6% increase in seedcotton yield and a 19.0% increase in lint yield over a three-year field trial, and simultaneously resulted in further improvement on fiber length, strength, and micronaire. Collectively, our data provide a potential strategy for genetic improvement on cotton fiber yield and quality.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"22 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142259483","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"QTL detection for grain shape and fine mapping of two novel locus qGL4 and qGL6 in rice","authors":"Yuanyuan Zheng, Minqi Li, Ping Sun, Guanjun Gao, Qinglu Zhang, Yanhua Li, Guangming Lou, Bian Wu, Yuqing He","doi":"10.1007/s11032-024-01502-8","DOIUrl":"https://doi.org/10.1007/s11032-024-01502-8","url":null,"abstract":"<p>Rice grain size and grain weight, which have a great influence on rice quality and yield, are complex quantitative traits that are mediated by grain length (GL), grain width (GW), length-to-width ratio (LWR), and grain thickness (GT). In this study, the BC<sub>1</sub>F<sub>2</sub> and BC<sub>1</sub>F<sub>2:3</sub> populations derived from a cross between two <i>indica</i> rice varieties, Guangzhan 63-4S (GZ63-4S) and Dodda, were used to locate quantitative trait loci (QTL) related to grain size. A total of 30 QTL associated with GL, GW and LWR were detected, of which six QTL were scanned repeatedly in both populations. Two QTL, <i>qGL4</i> and <i>qGL6</i>, were selected for genetic effect validation and were subsequently fine mapped to 2.359 kb and 176 kb, respectively. <i>LOC_Os04g52240</i> (known as <i>OsKS2/OsKSL2</i>), which encoding an ent-beyerene synthase and as the only gene found in 2.359 kb interval, was proposed to be the candidate for <i>qGL4</i>. Moreover, the grains of <i>qGL4</i> homozygous mutant plants generated by the CRISPR-Cas9 system became shorter and wider. In addition, the <i>qGL4</i> allele from GZ63-4S contributes to the increase of yield per plant. Our study not only laid the foundation for further functional study of <i>qGL4</i> and map-based cloning of <i>qGL6</i>, but also provided genetic resources for the development of high yield and good quality rice varieties.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"27 Pt 5 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142259485","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ying Xiang, Yu-Wen Zhao, Jing-Jing Wu, Xue Bai, Chu-Kun Wang, Chang-Ning Ma, Quan Sun, Da-Gang Hu
{"title":"MdABCI17 acts as a positive regulator to enhance apple resistance to Botryosphaeria dothidea","authors":"Ying Xiang, Yu-Wen Zhao, Jing-Jing Wu, Xue Bai, Chu-Kun Wang, Chang-Ning Ma, Quan Sun, Da-Gang Hu","doi":"10.1007/s11032-024-01501-9","DOIUrl":"https://doi.org/10.1007/s11032-024-01501-9","url":null,"abstract":"<p>The ATP-binding cassette (ABC) superfamily is involved in numerous complex biological processes. However, the understanding of ABCs in plant pathogen defense, particularly against <i>Botryosphaeria dothidea</i>, remains limited. In this study, we identified <i>MdABCI17</i> that plays a positive role in apple resistance to <i>B. dothidea</i>. Overexpression of <i>MdABCI17</i> significantly enhanced the resistance of apple calli and fruits to <i>B. dothidea</i>. Our findings revealed that the jasmonic acid (JA) content and the expression of genes associated with JA biosynthesis and signal transduction were higher in stable <i>MdABCI17-</i>overexpressing apple calli than that of wild-type after inoculation with <i>B. dothidea</i>. Similar results were obtained for apple fruits with transient overexpression of <i>MdABCI17</i>. Our research indicates that <i>MdABCI17</i> enhances apple resistance to <i>B. dothidea</i> through the JA signaling pathway. We further determined that <i>MdABCI17</i> plays a crucial role in the apple’s response to JA signaling. Moreover, exogenous methyl jasmonate (MeJA) treatment significantly enhanced the effectiveness of <i>MdABCI17</i> in boosting apple resistance to <i>B. dothidea</i>. We proposed a positive feedback regulatory loop between <i>MdABCI17</i>-mediated apple resistance to <i>B. dothidea</i> and JA signal. In summary, our study offers new insights into the role of ABC superfamily members in the control of plant disease resistance.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"296 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142204645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Adrian Ming Jern Lee, Melissa Yuin Mern Foong, Beng Kah Song, Fook Tim Chew
{"title":"Genomic selection for crop improvement in fruits and vegetables: a systematic scoping review","authors":"Adrian Ming Jern Lee, Melissa Yuin Mern Foong, Beng Kah Song, Fook Tim Chew","doi":"10.1007/s11032-024-01497-2","DOIUrl":"https://doi.org/10.1007/s11032-024-01497-2","url":null,"abstract":"<p>To ensure the nutritional needs of an expanding global population, it is crucial to optimize the growing capabilities and breeding values of fruit and vegetable crops. While genomic selection, initially implemented in animal breeding, holds tremendous potential, its utilization in fruit and vegetable crops remains underexplored. In this systematic review, we reviewed 63 articles covering genomic selection and its applications across 25 different types of fruit and vegetable crops over the last decade. The traits examined were directly related to the edible parts of the crops and carried significant economic importance. Comparative analysis with WHO/FAO data identified potential economic drivers underlying the study focus of some crops and highlighted crops with potential for further genomic selection research and application. Factors affecting genomic selection accuracy in fruit and vegetable studies are discussed and suggestions made to assist in their implementation into plant breeding schemes. Genetic gain in fruits and vegetables can be improved by utilizing genomic selection to improve selection intensity, accuracy, and integration of genetic variation. However, the reduction of breeding cycle times may not be beneficial in crops with shorter life cycles such as leafy greens as compared to fruit trees. There is an urgent need to integrate genomic selection methods into ongoing breeding programs and assess the actual genomic estimated breeding values of progeny resulting from these breeding programs against the prediction models.</p>","PeriodicalId":18769,"journal":{"name":"Molecular Breeding","volume":"44 1","pages":""},"PeriodicalIF":3.1,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142204644","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}