Xue Zhou, Chuqi Lin, Xi Du, Lin Zhou, Yinwei Wang, Xiaofeng Xu, Wenjing Xia
{"title":"The complete chloroplast genome sequence of <i>Graptopetalum paraguayense</i> (N. E. Br.) walth.1938 and phylogenetic analysis.","authors":"Xue Zhou, Chuqi Lin, Xi Du, Lin Zhou, Yinwei Wang, Xiaofeng Xu, Wenjing Xia","doi":"10.1080/23802359.2025.2528569","DOIUrl":"10.1080/23802359.2025.2528569","url":null,"abstract":"<p><p><i>Graptopetalum paraguayense</i> (N. E. Br.) Walth.1938 is a succulent plant in the family Crassulaceae, valued for its fleshy and color-variable leaves. This study assembled its complete chloroplast genome, which spans 150,040 bp with a GC content of 37.87 %. The genome contains 130 unique genes, comprising 85 protein-coding genes, 37 transfer RNA genes, and 8 ribosomal RNA genes. Phylogenetic analysis revealed a close relationship with several other Crassulaceae species, including <i>G. amethystinum</i>, <i>E. chihuahuaensis</i>, and <i>S. rubrotinctum</i>. These findings provide valuable genetic insights into <i>G. paraguayense</i> and serve as a foundation for future research.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"653-657"},"PeriodicalIF":0.5,"publicationDate":"2025-07-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12231258/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144591772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Qiming Zhao, Ling Song, Xiangqian Lv, Fucong Luo, Juan Lu, Xuebin Shao, Liping Zhang, Qiang Li, Mingying Gui, Honggao Liu
{"title":"The first two complete mitochondrial genomes of <i>Butyriboletus roseoflavus</i> (Hai B. Li & Hai L. Wei) D. Arora & J.L. Frank 2014 (Boletales: Boletaceae) and phylogenetic analysis.","authors":"Qiming Zhao, Ling Song, Xiangqian Lv, Fucong Luo, Juan Lu, Xuebin Shao, Liping Zhang, Qiang Li, Mingying Gui, Honggao Liu","doi":"10.1080/23802359.2025.2511153","DOIUrl":"10.1080/23802359.2025.2511153","url":null,"abstract":"<p><p>This study presents the first complete mitochondrial genome sequences of <i>Butyriboletus roseoflavus</i> (Hai B. Li & Hai L. Wei) D. Arora & J.L. Frank 2014 strains MG29 and Bro1. The mitogenomes of MG29 (36,551 bp) and Bro1 (36,544 bp) exhibit high similarity, with GC contents of 23.13% and 23.14%, respectively. Both genomes encode 15 core protein-coding genes (PCGs), 26 distinct open reading frames (ORFs), 24 intronic ORFs, 26 tRNA genes, and two rRNA genes. Phylogenetic analysis using Bayesian inference (BI) and maximum-likelihood (ML) of 14 concatenated mitochondrial PCGs revealed that <i>B. roseoflavus</i> forms a distinct clade closely related to <i>Boletus ornatipes</i> and <i>Boletus speciosus</i>. The study advances our understanding of mitogenome diversity in ectomycorrhizal fungi.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"646-651"},"PeriodicalIF":0.5,"publicationDate":"2025-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12207772/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144528854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome of <i>Elaphoglossum sinii</i> (Dryopteridaceae), an endemic fern from China.","authors":"Xiaofeng Guo, Minyu Li, Juan Li, Buyun Zhang, Xinsheng Qin, Jiangping Shu, Xilong Zheng","doi":"10.1080/23802359.2025.2519202","DOIUrl":"10.1080/23802359.2025.2519202","url":null,"abstract":"<p><p><i>Elaphoglossum sinii</i> C. Christensen 1932 is an endemic species of <i>Elaphoglossum</i> (Dryopteridaceae) in China, distributed in Guangxi and Yunnan provinces. Here, we assembled and annotated the first complete chloroplast genome sequence of <i>E. sinii</i>, which has a circular structure of 163,869 bp in length and GC content is 40.8%. The chloroplast genome contains 121 genes, including 79 protein-coding genes, 34 tRNA genes, and eight rRNA genes. Phylogenetic analysis based on the protein-coding sequences showed that <i>E. sinii</i> is closely related to <i>Elaphoglossum yoshinagae</i>. These results could provide the genetic information data for further phylogenetic studies of <i>Elaphoglossum</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"626-630"},"PeriodicalIF":0.5,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12207757/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144528850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Haijun Cheng, Yujie Huang, Mei Li, Longjiang Fan, Jian Li
{"title":"The complete chloroplast genome of <i>eriochloa villosa</i> (thunb.) kunth.","authors":"Haijun Cheng, Yujie Huang, Mei Li, Longjiang Fan, Jian Li","doi":"10.1080/23802359.2025.2519217","DOIUrl":"10.1080/23802359.2025.2519217","url":null,"abstract":"<p><p><i>Eriochloa villosa</i> (Thunb.) Kunth, 1829 (Woolly cupgrass), an invasive annual weed in the Poaceae family, poses a significant threat to corn and soybean crop production, resulting in substantial yield reduction. Despite its agronomic importance, genomic resources for this species remain limited. In this study, we report the first complete chloroplast genome assembly of a hexaploid <i>E. villosa</i>, which spans 139,777 base pairs and contains 127 annotated genes. This comprehensive chloroplast genomic characterization provides essential foundational resources for further genetic and evolutionary studies within the <i>Eriochloa</i> genus.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"637-640"},"PeriodicalIF":0.5,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12207762/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144528851","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yang Liu, Hao Dong, Linghong Li, Siyu Ding, Zhi Zang, Xi Lu
{"title":"The complete chloroplast genome sequence of <i>Brachybotrys paridiformis</i> Maxim. ex Oliv. (Boraginaceae), a species from a monotypic genus in Northeast China.","authors":"Yang Liu, Hao Dong, Linghong Li, Siyu Ding, Zhi Zang, Xi Lu","doi":"10.1080/23802359.2025.2519218","DOIUrl":"10.1080/23802359.2025.2519218","url":null,"abstract":"<p><p><i>Brachybotrys paridiformis</i> is well known for its remarkable medicinal properties. Here, the complete chloroplast genome of <i>B. paridiformis</i> was assembled and annotated. The genome was 147,853 bp in size contained a large single-copy region (80,375 bp), a small single-copy region (17,184 bp), and a pair of inverted repeat regions (25,147 bp), respectively. It comprised 128 genes, including 83 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis revealed that <i>Brachybotrys</i> and <i>Trigonotis</i> are phylogenetically closely related. The findings of this study provide valuable information for phylogenetic and evolutionary research on Boraginaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"641-645"},"PeriodicalIF":0.5,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12207759/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144528852","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mingyang Hao, Jiang Wu, Mengyao Wang, Ying Chen, Qi Qiao, Sophie Newmarch, Erqiang Wang, Richard Winkworth, Bingyou Fan
{"title":"The chloroplast genome of the allotriploid, <i>Paeonia × lemoinei</i> cv. Oukan, and its phylogenetic implications.","authors":"Mingyang Hao, Jiang Wu, Mengyao Wang, Ying Chen, Qi Qiao, Sophie Newmarch, Erqiang Wang, Richard Winkworth, Bingyou Fan","doi":"10.1080/23802359.2025.2519229","DOIUrl":"10.1080/23802359.2025.2519229","url":null,"abstract":"<p><p>The chloroplast genome of <i>Paeonia</i> × <i>lemoinei</i> cv. Oukan, a newly identified allotriploid from <i>Paeonia</i> sect. <i>Moutan</i>, shows typical tree peony features in size, structure, and gene content. A maximum-likelihood phylogenetic analysis revealed cv. Oukan and the known triploid cv. Shouanhong clustered into subsect. <i>Delavayanae</i> and subsect. <i>Vaginatae</i>, respectively. Cv. Oukan is closely related to its maternal parent cv. High Noon, while autotriploid cv. Shouanhong is sister to <i>P. ostii</i> but genetically distinct. This study provides genomic resources and phylogenetic insights for the first allotriploid tree peony, suggesting lineages in both subsects could serve as maternal parents for breeding triploid cultivars.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"615-619"},"PeriodicalIF":0.5,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12207776/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144528849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Characterization and phylogenetic analysis of the complete chloroplast genome of <i>Cordia subcordata</i> Lamarck 1899, a protected plant in China.","authors":"Mingzhong Liu, Hui Zhang, Wen Tang, Zhenyang Gao, Muqiu Zhao, Yunfeng Shi","doi":"10.1080/23802359.2025.2519220","DOIUrl":"10.1080/23802359.2025.2519220","url":null,"abstract":"<p><p>This study provides the first comprehensive analysis of the chloroplast genome of <i>Cordia subcordata</i>, a protected species in China, native to Malesia and widely distributed along the Pacific and Indian Oceans. The genome is 154,811 bp long, circular, with a 38.01% GC content, encoding 133 genes: 88 protein-coding, 37 tRNA, and 8 rRNA genes. Phylogenetic analysis reveals it clusters with other Cordia species and is distinct from genera like <i>Ehretia</i> and <i>Heliotropium</i>, highlighting significant diversification within the Boraginaceae family.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"631-636"},"PeriodicalIF":0.5,"publicationDate":"2025-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12207770/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144528848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome sequences of <i>Phlebopus portentosus</i> and <i>Leccinum extremiorientale</i> (Boletales; Boletinellaceae: Phlebopus; Leccinum).","authors":"Yun Huang, Fen Zhang, Li-Zhi Gao","doi":"10.1080/23802359.2025.2519211","DOIUrl":"10.1080/23802359.2025.2519211","url":null,"abstract":"<p><p>In this study, the complete mitochondrial genomes of <i>Phlebopus portentosus</i> and <i>Leccinum extremiorientale</i> were first sequencedusing the PacBio sequencing platform. We assembled circular mitogenomes of <i>P. portentosus</i> (57,307 bp) and <i>L. extremiorientale</i> (45,100 bp), with AT contents of 78.43% and 76.85%, respectively. Phylogenetic analysis revealed that <i>P. portentosus</i> and <i>L. extremiorientale</i> formed a well-supported clade with <i>Tylopilus brunneirubens</i> and <i>Suillus huapi</i> within the Boletales. This study provides high-quality reference genomes for future domestication and genetic breeding programs of <i>P. portentosus</i> and <i>L. extremiorientale.</i></p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"606-609"},"PeriodicalIF":0.5,"publicationDate":"2025-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12207780/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144528853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yu-Hui Tao, Jin-Qiang Cheng, Jin-Yang Li, Cheng-Pu Lu, Jie Chen, Wei Liu
{"title":"The first complete mitochondrial genome of <i>Rohanella titteya</i> (Cypriniformes: Cyprinidae) and its phylogenetic analysis.","authors":"Yu-Hui Tao, Jin-Qiang Cheng, Jin-Yang Li, Cheng-Pu Lu, Jie Chen, Wei Liu","doi":"10.1080/23802359.2025.2519215","DOIUrl":"10.1080/23802359.2025.2519215","url":null,"abstract":"<p><p>We report the first complete mitochondrial genome of <i>Rohanella titteya</i> (Deraniyagala 1929), revealing a 16,715 bp genome containing 37 genes (13 protein-coding genes, 22 tRNA genes, 2 rRNA genes). Phylogenetic analysis based on mitochondrial genomic data of <i>R. titteya</i> and 11 Cyprinidae species showed that it clustered most closely with the mitogenome of <i>Puntius eugrammus</i>, offering no support for the recent transfer of this species to the new genus <i>Rohanella</i>. The mitogenome presented here provides a useful resource for both conservation and future Cyprinidae taxonomy.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"590-594"},"PeriodicalIF":0.5,"publicationDate":"2025-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12180331/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144475957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chao Peng, Xianzhen Luo, Gaojie Chen, Linwen Xie, Peirong Ye, Sigang Fan
{"title":"The coding mitochondrial genome of crayfish <i>Cambarellus patzcuarensis</i> (Cambaridae, Decapoda) with phylogenetic analysis.","authors":"Chao Peng, Xianzhen Luo, Gaojie Chen, Linwen Xie, Peirong Ye, Sigang Fan","doi":"10.1080/23802359.2025.2519197","DOIUrl":"10.1080/23802359.2025.2519197","url":null,"abstract":"<p><p><i>Cambarellus patzcuarensis</i> is a popular aquarium freshwater crayfish in China. In this study, the mitochondrial genome of <i>C. patzcuarensis</i> was sequenced using Illumina HiSeq. The coding mitogenome of <i>C. patzcuarensis</i> is 15,000 bp in length, consisting 13 protein-coding genes (PCGs), 22 transfer RNAs, and two ribosomal RNAs. The A + T content was 70.17%. Ten PCGs had ATN as the start codon. Three PCGs were stopped with incomplete stop codon. The phylogenetic analysis shown that <i>C. patzcuarensis</i> was grouped with other <i>Procambarus</i> species. These results are useful for understanding the phylogenetic relationships of Cambaridae crayfish.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"602-605"},"PeriodicalIF":0.5,"publicationDate":"2025-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12180320/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144475954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}