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Mitochondrial DNA. Part B, Resources最新文献

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Chloroplast genome sequencing and phylogenetic analysis of Brassica tournefortii Gouan (Brassicaceae). 瓜安芸苔属植物叶绿体基因组测序及系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-11 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2529842
Eun Su Kang, Dong Chan Son, Sang-Chul Kim
{"title":"Chloroplast genome sequencing and phylogenetic analysis of <i>Brassica tournefortii</i> Gouan (Brassicaceae).","authors":"Eun Su Kang, Dong Chan Son, Sang-Chul Kim","doi":"10.1080/23802359.2025.2529842","DOIUrl":"10.1080/23802359.2025.2529842","url":null,"abstract":"<p><p>This study reported the chloroplast genome of <i>Brassica tournefortii</i> Gouan (Brassicaceae). The chloroplast genome was 153,167 bp, including a large single copy region of 83,247 bp, a small single copy region of 17,816 bp, and two inverted repeat regions of 26,052 bp. It contains 129 genes, comprising 84 coding sequences (CDSs), 37 tRNAs, and 8 rRNAs. Phylogenetic analysis of 78 CDSs showed <i>B. tournefortii</i> closely related to <i>B. carinata</i> A.Braun and <i>B. nigra</i> (L.) W.D.J.Koch. These findings provide essential chloroplast genome data for <i>B. tournefortii</i>, supporting research on species identification, evolutionary studies, and understanding species invasion mechanisms.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"703-708"},"PeriodicalIF":0.5,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12258233/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144637617","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome and phylogenetic analysis of a leaf insect Cryptophyllium oyae Cumming & Le Tirant, 2020 (Phasmatodea: Phylliidae) in China. 叶虫隐叶虫线粒体全基因组及系统发育分析[j] .中国叶虫科：隐叶虫科，2020。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-11 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528578
Guichun Liu, Zecheng Du, Baozhen Zhou, Zhiwei Dong, Lei Chen, Jianyue Qiu
{"title":"The complete mitochondrial genome and phylogenetic analysis of a leaf insect <i>Cryptophyllium oyae</i> Cumming & Le Tirant, 2020 (Phasmatodea: Phylliidae) in China.","authors":"Guichun Liu, Zecheng Du, Baozhen Zhou, Zhiwei Dong, Lei Chen, Jianyue Qiu","doi":"10.1080/23802359.2025.2528578","DOIUrl":"10.1080/23802359.2025.2528578","url":null,"abstract":"<p><p>Stick insects have evolved remarkable camouflage adaptations, but their geographical distribution and phylogeny remain insufficiently understood. In this study, we confirmed the presence of <i>Cryptophyllium oyae</i> Cumming and Le Tirant in China, and presented its complete mitochondrial genome (16,820 bp) for the first time. The genome consists of 13 protein-coding genes, 22 transfer RNA genes, two ribosomal RNA genes, and a control region. Additionally, a phylogenetic tree using mitochondrial genomes from 51 Phasmatodea species confirmed <i>C. oyae</i> belongs to the Phylliidae clade. This study enhances taxonomic identification and provides insights for phylogenetic analysis and conservation of Phasmatodea species in future studies.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"698-702"},"PeriodicalIF":0.5,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12258217/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144637619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of oriental false hawksbeard Youngia japonica (Asteraceae, tribe Cichorieae). 东方假鹰须龙葵（菊科，蝉科）叶绿体全基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-11 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528570
Hyoung Tae Kim, Jung Sung Kim
{"title":"The complete chloroplast genome of oriental false hawksbeard <i>Youngia japonica</i> (Asteraceae, tribe Cichorieae).","authors":"Hyoung Tae Kim, Jung Sung Kim","doi":"10.1080/23802359.2025.2528570","DOIUrl":"10.1080/23802359.2025.2528570","url":null,"abstract":"<p><p>To clarify the phylogenomic relationship of the genus <i>Youngia</i> and its alliances, we firstly determined the complete chloroplast genome sequence of <i>Youngia japonica</i>. It was a typical circular form composed of 152,540 bp. Molecular phylogenetic analysis using the complete chloroplast genomes revealed that the genera <i>Youngia</i> and <i>Crepidiastrum</i> form a clade within the tribe Cichorieae. However, the taxonomic position of <i>Y. simulatrix</i> was controversial because it was not embedded in the genus <i>Youngia</i>. In the other hands, it was suggested the <i>psbA-trnH</i> region as a good molecular marker to identify <i>Y. japonica</i> and its close relate taxa <i>Y. longiflora</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"673-677"},"PeriodicalIF":0.5,"publicationDate":"2025-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12258190/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144637618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Symplocos tanakana. 田中花的全线粒体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-10 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528579
Jianfeng Cao, Bingqin Wang, Yudong Gan, Chao Wu, Boxing Cheng
{"title":"The complete mitochondrial genome of <i>Symplocos tanakana</i>.","authors":"Jianfeng Cao, Bingqin Wang, Yudong Gan, Chao Wu, Boxing Cheng","doi":"10.1080/23802359.2025.2528579","DOIUrl":"10.1080/23802359.2025.2528579","url":null,"abstract":"<p><p><i>Symplocos tanakana</i> Nakai (1918) is a deciduous shrub or small tree with multiple applications. It is native to China and belongs to the Symplocaceae family. This study presents the complete mitochondrial genomic sequence of <i>S. tanakana.</i> This is the first member of the Symplocaceae family for which the complete mitochondrial genomic sequence is being reported. The mitochondrial genome was assembled into a single 877,273-bp circular molecule that contains 290 open reading frames (ORFs) and 68 annotated genes, including 38 protein-coding, 3 ribosomal RNA, and 27 transfer RNA genes. Phylogenetic analysis of the mitochondrial genomes of 33 species from 17 plant families using the maximum likelihood method showed evolutionary relationships. These findings enhance our understanding of the <i>S. tanakana</i> mitochondrial genomic features and provide a basis for the development of <i>S. tanakana</i> molecular markers.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"692-697"},"PeriodicalIF":0.5,"publicationDate":"2025-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12247094/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144626701","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete mitochondrial genome of Austrapoda dentatus Oberthür, 1879 (Lepidoptera: Limacodidae). 斑点齿南足猿（Austrapoda dentatus oberth<e:1> r, 1879）线粒体全基因组（鳞翅目：狐蛉科）。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-10 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528567
Jeong Sun Park, Jun Seong Jeong, Jee-Young Pyo, Sung-Soo Kim, Iksoo Kim
{"title":"Complete mitochondrial genome of <i>Austrapoda dentatus</i> Oberthür, 1879 (Lepidoptera: Limacodidae).","authors":"Jeong Sun Park, Jun Seong Jeong, Jee-Young Pyo, Sung-Soo Kim, Iksoo Kim","doi":"10.1080/23802359.2025.2528567","DOIUrl":"10.1080/23802359.2025.2528567","url":null,"abstract":"<p><p>The phylogenetic relationships within Limacodidae remain unresolved, highlighting the need for expanded genomic resources. This study presents the first complete mitochondrial genome of <i>Austrapoda dentatus</i>, 15,354 bp in length and comprising 13 protein-coding genes, 22 tRNAs, two rRNAs, and an A+T rich region. The gene arrangement follows the typical Lepidopteran pattern. Phylogenetic analysis based on the 13 protein-coding genes supports A. <i>dentatus</i> and <i>Apoda limacodes</i> as sister taxa within the <i>Apoda</i> clade. These findings aid in understanding Limacodidae phylogeny and emphasize the importance of securing broader mitochondrial genome sequences across the family.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"668-672"},"PeriodicalIF":0.5,"publicationDate":"2025-07-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12247113/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144626700","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Cyrtosia nana (Rolfe ex Downie) Garay and its phylogenetic analysis. 文章作者：苏兰（Cyrtosia nana, Rolfe ex Downie） Garay)叶绿体全基因组及其系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-09 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528572
Ding-Xiang Yu, Hai He
{"title":"The complete chloroplast genome of <i>Cyrtosia nana</i> (Rolfe ex Downie) Garay and its phylogenetic analysis.","authors":"Ding-Xiang Yu, Hai He","doi":"10.1080/23802359.2025.2528572","DOIUrl":"10.1080/23802359.2025.2528572","url":null,"abstract":"<p><p><i>Cyrtosia nana</i> is a mycotrophic orchid distributed in southwestern China and Thailand. Here, we sequenced and assembled its complete chloroplast (cp) genome using next-generation sequencing (NGS) and established a robust phylogenetic framework, providing a foundation for further studies on evolution of related taxa. The complete chloroplast genome was 85,766 bp, including a pair of inverted repeat regions (12,999 bp), a small single-copy region (14,744 bp), and a large single-copy region (45,024 bp). It encodes 47 unique genes, including 28 protein-coding genes, 16 tRNA genes, and 3 rRNA genes. Phylogenetic analysis revealed that <i>C. nana</i> was closely related to <i>C. lindleyana</i> and <i>C. septentrionalis</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"683-686"},"PeriodicalIF":0.5,"publicationDate":"2025-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12243006/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144608761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The mitochondrial genome of the firefly, Pyrocoelia amplissima (Olivier, 1886) (Coleoptera: Lampyridae) and its phylogenetic analysis. 萤火虫，Pyrocoelia amplissima (Olivier, 1886)（鞘翅目：蛾蛉科）的线粒体基因组及其系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-09 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2468753
Mao Wang, Lei Wang, Chunyan Yi, Jian Tang, Qingdong Chen, Zhenzhen Wei, Jingwei Guo, Yang Yang, Song Chen
{"title":"The mitochondrial genome of the firefly, <i>Pyrocoelia amplissima</i> (Olivier, 1886) (Coleoptera: Lampyridae) and its phylogenetic analysis.","authors":"Mao Wang, Lei Wang, Chunyan Yi, Jian Tang, Qingdong Chen, Zhenzhen Wei, Jingwei Guo, Yang Yang, Song Chen","doi":"10.1080/23802359.2025.2468753","DOIUrl":"10.1080/23802359.2025.2468753","url":null,"abstract":"<p><p>We presents the first complete mitochondrial genome of <i>Pyrocoelia amplissima</i> (Olivier, 1886) (Coleoptera: Lampyridae: Pyrocoelia), a Chinese endemic firefly. The 17,426 bp circular genome contains 13 PCGs, 23 tRNAs, 2 rRNAs, and a control region with a notable A + T bias (76.91%). Phylogenetic analysis of 12 firefly species using 13 PCGs places <i>P. amplissima</i> basally within its genus. This complete mitochondrial genome provides valuable genetic information for further research on Lampyridae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"678-682"},"PeriodicalIF":0.5,"publicationDate":"2025-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12243008/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144608763","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitogenome of Dytiscus marginalis czerskii (Dytiscidae, Coleoptera). 文章标题边缘蝶蛾（蝶蛾科，鞘翅目）的全有丝分裂基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-09 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528577
Heesoo Kim, Jin-Young Kim, Kiwon Kim, Jisoo Kim, Myeongseok Lee, So Young Park, Kyoung Su Choi
{"title":"The complete mitogenome of <i>Dytiscus marginalis czerskii</i> (Dytiscidae, Coleoptera).","authors":"Heesoo Kim, Jin-Young Kim, Kiwon Kim, Jisoo Kim, Myeongseok Lee, So Young Park, Kyoung Su Choi","doi":"10.1080/23802359.2025.2528577","DOIUrl":"10.1080/23802359.2025.2528577","url":null,"abstract":"<p><p><i>Dytiscus marginalis czerskii</i> (Zaitzev, 1953), a rare great diving beetle species, is found in the Demilitarized Zone (DMZ) of South Korea. We present the first complete mitogenome of <i>D. marginalis czerskii</i>, which is 18,385 bp in length and comprises 37 genes: 13 protein-coding genes, two rRNA genes, and 22 tRNA genes. The overall base composition is A (42.4%), C (11.7%), T (37.6%), and G (8.3%), with a high AT content of 80%. This mitogenome provides valuable data for understanding the phylogenetic relationships and evolutionary history within the Dytiscidae family.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"687-691"},"PeriodicalIF":0.5,"publicationDate":"2025-07-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12243016/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144608762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome and phylogenetic status of carpesium nepalense less. 1831 (asteraceae). 尼泊尔绒猴属植物叶绿体全基因组及其系统发育状况。1831(菊科)。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-07 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528575
Yu Su, Jingyi Peng, Yining Di, Hancaiyuan Zheng, Xianhan Huang, Lufeng Liu
{"title":"The complete chloroplast genome and phylogenetic status of <i>carpesium nepalense</i> less. 1831 (asteraceae).","authors":"Yu Su, Jingyi Peng, Yining Di, Hancaiyuan Zheng, Xianhan Huang, Lufeng Liu","doi":"10.1080/23802359.2025.2528575","DOIUrl":"10.1080/23802359.2025.2528575","url":null,"abstract":"<p><p>The complete chloroplast genome of <i>Carpesium nepalense</i> (Asteraceae), an important medicinal herb, was characterized. It exhibits a typical quadripartite structure with inverted repeats (24,947 bp), a large single-copy region (82,870 bp), and a small single-copy region (18,473 bp), with 37.7% GC content. The genome contains 133 genes, including 88 protein-coding, 37 tRNA, and 8 rRNA genes. Phylogenetic analysis confirms <i>Carpesium</i> as monophyletic, with <i>C. nepalense</i> genetically closest to <i>C. cernuum, C. faberi, C. lipskyi</i>, and <i>C. longifolium</i>. This work enriches the molecular database of <i>Carpesium</i> and provides new genomic resources for the development and utilization of medicinal herbs..</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"663-667"},"PeriodicalIF":0.5,"publicationDate":"2025-07-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12239104/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144600968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Microphysogobio chinssuensis (Cypriniformes: Gobioninae) from Shanxi Province of China. 山西省中华微藻的线粒体全基因组（鲤形目：虾蛄科）。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-07-06 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2528574
Qi Zhou, Jiali Wang, Ya-Hui Zhao, Qi Wang, Yanliang Jiang
{"title":"The complete mitochondrial genome of <i>Microphysogobio chinssuensis</i> (Cypriniformes: Gobioninae) from Shanxi Province of China.","authors":"Qi Zhou, Jiali Wang, Ya-Hui Zhao, Qi Wang, Yanliang Jiang","doi":"10.1080/23802359.2025.2528574","DOIUrl":"10.1080/23802359.2025.2528574","url":null,"abstract":"<p><p><i>Microphysogobio chinssuensis</i> Nichols 1926, one of the most common <i>Microphysogobio</i> species in the Yellow River Basin, is endemic to China. However, high-quality molecular data such as mitochondrial DNA, remain scare. In this study, the complete mitochondrial genome of <i>M. chinssuensis</i> protospecies collected from its type locality, Shanxi Province of China, was sequenced, assembled, and annotated. Our study not only provides essential molecular characterization of <i>M. chinssuensis</i> from its type locality, which would serve as an important reference for identification, but also would provide reliable genetic resources for further taxonomic, systematic, and genetic studies of the genus <i>Microphysogobio</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 8","pages":"658-662"},"PeriodicalIF":0.5,"publicationDate":"2025-07-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12231270/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144591773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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