{"title":"The complete chloroplast genome of <i>Tulipa uniflora</i> (Liliaceae) in Mongolia.","authors":"Shukherdorj Baasanmunkh, Nudkhuu Nyamgerel, Batlai Oyuntsetseg, Dariganga Munkhtulga, Andrey Erst, Serik Kubentayev, Gun-Aajav Bayarmaa, Jung Won Yoon, Hyeok Jae Choi","doi":"10.1080/23802359.2025.2468748","DOIUrl":"10.1080/23802359.2025.2468748","url":null,"abstract":"<p><p><i>Tulipa uniflora</i> (L.) Besser ex Baker (1874) is distributed throughout China, Mongolia, and Russia (Siberia). This study reports the complete chloroplast genome sequence of <i>T. uniflora</i> based on high-throughput sequencing. The genome has a natural quadripartite structure and is 152,254 bp long with 36.5% GC content. It has 98 unique genes, including 4 rRNA genes, 29 tRNA genes, and 75 protein-coding genes. A total of 77 single-sequence repeats were identified, mostly in intergenic spacer regions. Anticodon recognition patterns revealed 19,717 codons in the protein-coding genes. Based on the whole chloroplast genome, <i>T. uniflora</i> was separated early from <i>Tulipa</i> species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"257-261"},"PeriodicalIF":0.5,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11849011/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143492677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Characterization of the complete chloroplast genome of <i>Garcinia xanthochymus</i> Hook. f. ex T. Anderson 1874 (Clusiaceae) and its phylogenetic implications.","authors":"Hong Pan, Bo Pan, Kaixian Zhu, GuoFa Cui","doi":"10.1080/23802359.2025.2468760","DOIUrl":"10.1080/23802359.2025.2468760","url":null,"abstract":"<p><p><i>Garcinia xanthochymus</i> is renowned for sweet, water-rich pulp fruits. Despite some phytochemical analyses highlighting its economic and medicinal value, research on its phylogeny is scarce. To fill this void, we sequenced the first chloroplast genome of <i>G. xanthochymus</i>. The genome was 157,688 bp long with a typical quadripartite structure, consisting of two IR (27,017 bp each), a LSC (85,998 bp), and a SSC (17,656 bp). It contained 125 unique genes, including 80 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Forming a distinct branch, <i>G. pedunculata</i>, <i>G. subelliptica</i> and <i>G. mangostana</i> showed the closest phylogenetic relationships.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"262-266"},"PeriodicalIF":0.5,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11849017/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143492673","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of a rarely reported porcelain crab, <i>Pisidia striata</i> (Anomura, Galatheoidea, Porcellanidae), from the Chinese waters.","authors":"Xifei Wang, Xuefeng Fang, Dong Dong","doi":"10.1080/23802359.2025.2467162","DOIUrl":"10.1080/23802359.2025.2467162","url":null,"abstract":"<p><p>The species <i>Pisidia striata</i> is predominantly distributed along the southeastern coast of China and belongs to the shallow-water crab family Porcellanidae. The complete mitochondrial genome of <i>P. striata</i>, which spans 15,357 bp and contains 13 protein-coding genes, 22 tRNAs and 2 rRNAs, is presented in this study. The nucleotide composition reveals A (37.81%), T (35.48%), G (9.75%), and C (16.96%). Phylogenetic analysis demonstrates a close relationship between <i>P. striata</i> and <i>P. serratifrons</i> within the <i>Pisidia</i> clade with robust bootstrap support values. This mitochondrial genome will be a significant supplement for the genus <i>Pisidia</i> and whole mitogenome phylogenetic analysis provided insights into further evolutionary research of Porcellanidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"244-247"},"PeriodicalIF":0.5,"publicationDate":"2025-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11843626/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143483655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Haotian Li, Sai Wang, Wenyu Liu, Huimin Yang, Xin Wang
{"title":"The complete mitogenome of <i>Torodora canaliculata</i> (Yu & Wang, 2022) (Lepidoptera: Lecithoceridae) and its phylogenetic implications.","authors":"Haotian Li, Sai Wang, Wenyu Liu, Huimin Yang, Xin Wang","doi":"10.1080/23802359.2025.2468752","DOIUrl":"10.1080/23802359.2025.2468752","url":null,"abstract":"<p><p>The complete mitochondrial genome sequence of <i>Torodora canaliculata</i> has been obtained based on the Illumina next-generation sequencing technology, which is currently the first reported mitogenome in the subfamil Torodorinae. The mitogenome is 15,590 bp in length, consisting of 13 PCGs, 22 tRNAs, 2 rRNA genes and one non-coding A + T rich control region. The phylogenetic tree constructed based on the maximum likelihood (ML) methods using the whole genome sequences does well support for the sister branch relationship between <i>T. canaliculata</i> and <i>Issikiopteryx taipingensis</i>. The complete mitogenome of <i>T. canaliculata</i> will provide useful genetic information for the evolutionary relationship of the Gelechioidea.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"248-252"},"PeriodicalIF":0.5,"publicationDate":"2025-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11843649/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143483657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of the <i>Toxopneustes pileolus</i> Lamarck, 1816 (Echinoidea: Camarodonta: Toxopneustidae) and phylogenetic analysis.","authors":"Xinyuan Wang, Weijian Guo","doi":"10.1080/23802359.2025.2468778","DOIUrl":"10.1080/23802359.2025.2468778","url":null,"abstract":"<p><p>In this study, we report the complete mitochondrial genome sequence of <i>Toxopneustes pileolus</i> (Lamarck, 1816), which is the first complete mitochondrial genome of this genus <i>Toxopneustes</i>. The mitochondrial genome is 15,711 bp in length and includes 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and one non-coding control region (D-loop). Phylogenetic analysis based on mitochondrial genomes suggested a potential close relationship between the genus <i>Toxopneustes</i> and the genus <i>Lytechinus</i>. This study provided valuable genetic data for <i>T. pileolus</i> and contributed to the exploration of the phylogenetic relationships within the family Toxopneustidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"253-256"},"PeriodicalIF":0.5,"publicationDate":"2025-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11841158/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143468383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xing Peng Han, Lin Song, Quan Wang, Xiao Jiang Chen
{"title":"Characterization and phylogenetic analysis of the mitochondrial genome of <i>Rhinogobius wuyiensis</i> Li & Zhong, 2007 (Gobiiformes: Gobiidae: Gobionellinae).","authors":"Xing Peng Han, Lin Song, Quan Wang, Xiao Jiang Chen","doi":"10.1080/23802359.2025.2466584","DOIUrl":"10.1080/23802359.2025.2466584","url":null,"abstract":"<p><p>The mitochondrial genome of <i>Rhinogobius wuyiensis</i> Li & Zhong, 2007 was initially assembled using sequencing data from the Illumina HiSeq platform (San Diego, CA), resulting in a circular mitogenome of 16,502 base pairs with a pronounced A + T nucleotide bias. Maximum-likelihood (ML) and Bayesian inference (BI) revealed the phylogenetic relationships within the genus <i>Rhinogobius</i>, indicating that <i>R. wuyiensis</i> is closely related to a clade comprising <i>R. maculagenys</i>, <i>R. shennongensis</i>, <i>R. niger</i>, and <i>R. lentiginis</i>. This study enriches genetic resources and advances the understanding of phylogenetics within the genus <i>Rhinogobius</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"233-238"},"PeriodicalIF":0.5,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11837909/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143458595","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yu Sun, Yutian Jin, Maoyin Sun, Liqiang Wang, Qianqian Liu
{"title":"Whole plastome sequence of <i>Hibiscus moscheutos</i> L. 1753 (Malvaceae) and its phylogenetic analysis.","authors":"Yu Sun, Yutian Jin, Maoyin Sun, Liqiang Wang, Qianqian Liu","doi":"10.1080/23802359.2025.2466604","DOIUrl":"10.1080/23802359.2025.2466604","url":null,"abstract":"<p><p><i>Hibiscus moscheutos</i>, a perennial herb in the Malvaceae family, has medicinal properties but lacks molecular data. This study sequenced and analyzed its first complete plastome using next-generation sequencing. The 160,208 bp circular plastome has a typical quadripartite structure with 130 genes and 36.93% GC content. Phylogenetic analysis showed that <i>H. mutabilis</i> is sister to <i>H. taiwanensis</i>. This study provides essential molecular data for future research on <i>Hibiscus</i> phylogeny, taxonomy, and evolution.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"239-243"},"PeriodicalIF":0.5,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11841096/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143468385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yeong Gwon Choi, Dooyoung Kim, Gyeongmin Kim, Cho Rong Shin, Bia Park, Eun Hwa Choi, Ui Wook Hwang
{"title":"The complete mitochondrial genome of a ground beetle, <i>Chlaenius naeviger</i> (Carabidae: Harpalinae: Chlaeniini), from South Korea.","authors":"Yeong Gwon Choi, Dooyoung Kim, Gyeongmin Kim, Cho Rong Shin, Bia Park, Eun Hwa Choi, Ui Wook Hwang","doi":"10.1080/23802359.2025.2466587","DOIUrl":"10.1080/23802359.2025.2466587","url":null,"abstract":"<p><p><i>Chlaenius naeviger</i> Morawitz, 1862 is a ground beetle species with a potential as a biological control agent for agricultural pests. In this study, we sequenced and annotated the complete mitochondrial genome (mitogenome) of <i>C. naeviger</i>, which is 16,594 bp in length and comprises 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and an A + T rich region. Furthermore, we used the nucleotide sequences of 13 PCGs to reconstruct a maximum likelihood phylogenetic tree of the family Carabidae, which revealed a close relationship between Chlaeniini and Panagaeini (BP 100). Our findings shed light on the phylogenetic relationships among the harpaline tribes.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"224-228"},"PeriodicalIF":0.5,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11837945/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143458626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of <i>Thyridosmylus trimaculatus</i> Wang, Du <i>et</i> Liu, 2008 (Neuroptera: Osmylidae: Spilosmylinae) with phylogenetic analysis.","authors":"Ruyue Zhang, Shuo Tian, Xingyue Liu, Yuyu Wang","doi":"10.1080/23802359.2025.2466579","DOIUrl":"10.1080/23802359.2025.2466579","url":null,"abstract":"<p><p>The complete mitochondrial genome of <i>Thyridosmylus trimaculatus</i> Wang, Du et Liu, 2008 with 16,011 bp long is reported here. It contains 37 annotated genes and the control region. Most protein-coding genes (PCGs) started with typical ATN, except <i>ND1</i> initiated with TTG. Most PCGs terminated with the complete stop codons (i.e. TAA and TAG), while <i>COX2, ND4, ND5, CytB</i> terminated with T-tRNA, and <i>ND2</i>, <i>ND3</i> terminated with TA-tRNA. Phylogenetic analysis revealed that <i>T. trimaculatus</i> were closely related to <i>T. langii</i>. Osmylinae were recovered as the sister group to Spilosmylinae + Protosmylinae. Osmylidae were demonstrated being the sister group to Nevrorthidae + Sisyridae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"218-223"},"PeriodicalIF":0.5,"publicationDate":"2025-02-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11834781/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143449277","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yali Chang, Lingzhi Chen, Jinlei Luo, Yi Chen, Shuangfeng Jiang, Mufang Sun
{"title":"The complete chloroplast genome sequence of <i>Camellia sinensis</i> var. <i>sinensis</i> cultivar \"Yuexiangzao\".","authors":"Yali Chang, Lingzhi Chen, Jinlei Luo, Yi Chen, Shuangfeng Jiang, Mufang Sun","doi":"10.1080/23802359.2025.2460780","DOIUrl":"10.1080/23802359.2025.2460780","url":null,"abstract":"<p><p><i>Camellia sinensis</i> var. <i>sinensis</i> cultivar \"Yuexiangzao\" (YXZ) was a new tea cultivar in China. In this study, we reported a complete chloroplast (CP) genome based on the DNGSEQ sequencing technology. The CP genome sequence of YXZ was 157,041 bp in length and contained a large single copy (LSC, 86,594 bp), a small single copy (SSC, 18,291 bp), and two inverted repeats (IRs, 26,078 bp). The GC contents of LSC, SSC, and two IRs were 35.31%, 30.53%, and 42.94%, respectively. The phylogenetic analysis showed that YXZ was closely related to <i>C. sinensis</i> cv. \"Tieluohan\" and <i>C. sinensis</i> cv. \"Xinyang 10.\"</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"207-211"},"PeriodicalIF":0.5,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11823394/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143414673","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}