Shaoying Cheng, Jingrui Li, Hongxia Cui, Yuanyuan Li, Zhonghua Liu
{"title":"The complete chloroplast genome sequence of <i>Syringa meyeri</i> (Oleaceae).","authors":"Shaoying Cheng, Jingrui Li, Hongxia Cui, Yuanyuan Li, Zhonghua Liu","doi":"10.1080/23802359.2025.2512866","DOIUrl":"10.1080/23802359.2025.2512866","url":null,"abstract":"<p><p><i>Syringa meyeri</i> C. K. Schneid. 1912 (Oleaceae) is a common dwarf ornamental lilac, native to Northeast China. In this study, the complete chloroplast genome of <i>S. meyeri</i> was assembled, exhibiting a typical quadripartite structure with a total length of 160,459 bp and a GC content of 37.9%. A total of 141 genes were annotated, including 96 protein-coding genes, 37 tRNA genes, and eight rRNA genes. Phylogenetic analysis of 19 cp genomes indicated that <i>S. meyeri</i> is most closely related to <i>S. pubescens</i> subsp. <i>microphylla.</i> These results provide essential genomic resources for future phylogenetic and evolutionary studies in <i>Syringa</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"543-547"},"PeriodicalIF":0.5,"publicationDate":"2025-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12135084/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144234542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Andrew G King, Sandy Ingleby, Matthew J Lott, Kristofer M Helgen, Mark D B Eldridge, David E Alquezar-Planas
{"title":"The complete mitochondrial genome of Poncelet's giant rat (<i>Solomys ponceleti</i>) from the Solomon Islands Archipelago.","authors":"Andrew G King, Sandy Ingleby, Matthew J Lott, Kristofer M Helgen, Mark D B Eldridge, David E Alquezar-Planas","doi":"10.1080/23802359.2025.2509798","DOIUrl":"10.1080/23802359.2025.2509798","url":null,"abstract":"<p><p>Poncelet's giant rat (<i>Solomys ponceleti</i> Troughton 1935), is a rare, large murine rodent that is endemic to the Solomon Islands Archipelago in the southwest Pacific Ocean. The species is only known from the adjacent islands of Bougainville and Choiseul and is the largest member of the genus. Here, we describe the complete mitochondrial genome of <i>S. ponceleti</i> and compare it to other Rodentia. The <i>S. ponceleti</i> circular mitogenome was 16,246 bp and contained 13 protein-coding genes, two rRNA genes, 22 tRNAs, and a control region (D-loop). Phylogenetic analysis of selected, published mitogenomes reveals a close relationship to other Australo-Papuan murine rodents.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"548-553"},"PeriodicalIF":0.5,"publicationDate":"2025-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12135083/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144234543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Caiyin Tang, Wentao Han, Shaowen Ke, Danyang Wang, Kai Chen, Lisui Bao, Lei Guan, Jingjie Hu, Shi Wang, Zhenmin Bao
{"title":"Complete mitochondrial genome and phylogenetic analysis of <i>Podabacia crustacea</i> (Pallas, 1766).","authors":"Caiyin Tang, Wentao Han, Shaowen Ke, Danyang Wang, Kai Chen, Lisui Bao, Lei Guan, Jingjie Hu, Shi Wang, Zhenmin Bao","doi":"10.1080/23802359.2025.2512867","DOIUrl":"10.1080/23802359.2025.2512867","url":null,"abstract":"<p><p>The coral genus <i>Podabacia serves as a bioindicator of offshore environments.</i> This study presents an updated complete mitochondrial genome of <i>Podabacia crustacea</i> (Pallas, 1766). The final mitogenome spans 17,009 bp in length and contains 13 protein-coding genes, two transfer RNA genes, and two ribosomal RNA genes. It is worth noting that a previously published misannotation of the cytochrome c oxidase subunit I (<i>COX1</i>) gene has been corrected. Furthermore,the maximum-likelihood (ML) phylogenetic analysis revealed that the Fungiidae family clusters within the 'Robusta' clade. The mitogenome of <i>P. crustacea</i> provides a valuable resource for coral phylogenetic research.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 7","pages":"537-542"},"PeriodicalIF":0.5,"publicationDate":"2025-06-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12135088/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144234541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Characterization and phylogenetic analysis of the complete mitochondrial genome of <i>Fomitopsis palustris</i> (Berk. & M.A. Curtis) Gilb. & Ryvarden, 1985 (Polyporales: Fomitopsidaceae).","authors":"Wei Gao, Shuyi Chen, Qiang Li","doi":"10.1080/23802359.2025.2509806","DOIUrl":"10.1080/23802359.2025.2509806","url":null,"abstract":"<p><p><i>Fomitopsis palustris</i> (Berk. & M.A. Curtis) Gilb. & Ryvarden, 1985 is a well-known brown-rot basidiomycete. However, the complete mitochondrial genome of <i>F. palustris</i> from China remains uncharacterized. In this study, we present the complete mitochondrial genome sequence of <i>F. palustris</i>, which spans 64,223 bp and has a GC content of 23.89%. The genome contains 15 essential protein-coding genes, 10 other ORFs, nine intronic ORFs, 26 tRNAs, and two rRNAs. Phylogenetic analysis via Bayesian inference (BI) was conducted to elucidate the evolutionary relationships among 10 closely related species, revealing well-supported clades and revealing the close relationship between <i>F. palustris</i> and <i>F. pinicola</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"532-536"},"PeriodicalIF":0.5,"publicationDate":"2025-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12107645/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144160260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of <i>Tenguna medogensis</i> (Hemiptera: Dictyopharidae).","authors":"Fang Yu, Zhi-Shun Song","doi":"10.1080/23802359.2025.2509805","DOIUrl":"10.1080/23802359.2025.2509805","url":null,"abstract":"<p><p>In this study, we sequenced and annotated the complete mitochondrial genome of <i>Tenguna medogensis</i> Song & Liang, 2007 (Hemiptera: Dictyopharidae). The mitogenome was 15,400 bp in length with a high A + T content (76.95%), containing 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region. All protein-coding genes started with ATC/ATG/ATT, except for <i>nad1</i> and <i>nad5</i>, which used GTG. The predicted secondary structures of all tRNA genes were typical cloverleaf except for <i>trnS</i> (gcu) and <i>trnV</i> (uac), lacking the dihydrouridine stem. In the maximum-likelihood phylogenetic result of planthoppers, <i>Tenguna</i> was closely related to <i>Metaurus</i> in Dictyopharidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"522-527"},"PeriodicalIF":0.5,"publicationDate":"2025-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12107646/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144160263","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marylin Miga, Aqilah Awg Abdul Rahman, Sivachandran Parimannan, Heera Rajandas, Frankie Thomas Sitam, Lili Tokiman, Jai Kemalok, Mohd Shahir Shamsir, Faezah Mohd Salleh
{"title":"Complete mitochondrial genome data and phylogenetic analysis of the Plain Banded Awl, <i>Hasora vitta</i> (Lepidoptera: Hesperiidae: Coeliadinae) from Malaysia.","authors":"Marylin Miga, Aqilah Awg Abdul Rahman, Sivachandran Parimannan, Heera Rajandas, Frankie Thomas Sitam, Lili Tokiman, Jai Kemalok, Mohd Shahir Shamsir, Faezah Mohd Salleh","doi":"10.1080/23802359.2025.2509807","DOIUrl":"10.1080/23802359.2025.2509807","url":null,"abstract":"<p><p>We report the complete mitogenome of <i>Hasora vitta</i> (Plain Banded Awl) sampled from Malaysia. The mitogenome is 15,289 bp long, comprising of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and a control region. All PCGs were initiated by the typical ATN codon, except for COX1 with a CGA start codon. Two PCGs (COX1 and COX2) were terminated with an incomplete stop codon T. Phylogenetic analysis highly supported the placement of <i>Hasora vitta</i> from Malaysia within Coeliadinae and is clustered with two <i>Hasora vitta</i> samples from China.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"528-531"},"PeriodicalIF":0.5,"publicationDate":"2025-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12107662/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144160261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Soon-Ho Kwon, Jin-Sung Huh, Sik-Won Choi, Su Jin Park, Hyunmo Choi
{"title":"Complete chloroplast genome sequence of <i>Quercus salicina</i> Blume (Fagaceae).","authors":"Soon-Ho Kwon, Jin-Sung Huh, Sik-Won Choi, Su Jin Park, Hyunmo Choi","doi":"10.1080/23802359.2025.2503396","DOIUrl":"10.1080/23802359.2025.2503396","url":null,"abstract":"<p><p><i>Quercus salicina</i> Blume 1851, an evergreen broad-leaved species belonging to the family Fagaceae, is primarily distributed from southern Korea to Japan. In this study, we comprehensively analyzed the chloroplast genome of <i>Q. salicina</i>. Its genome, with a quadripartite structure, spanned 160,801 bp and had a GC content of 36.58%. Annotation revealed 131 genes, including 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. These intricacies in the genome were further confirmed by the presence of introns in multiple genes. Phylogenetic analysis of 19 Fagales species elucidated their evolutionary relationships, with <i>Fagus engleriana</i> branching early and <i>Q. salicina</i> showing a close relationship with <i>Q. gilva</i>. This study enhances our understanding of the genetic makeup of <i>Q. salicina</i> and its evolutionary dynamics within the <i>Fagales</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"504-507"},"PeriodicalIF":0.5,"publicationDate":"2025-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12093796/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Sequencing of the chloroplast genome of Taimo, a paddy cultivar of Taro (<i>Colocasia esculenta</i> (L.) Schott) in the Ryukyu Archipelago.","authors":"Reina Takaesu, Yukihiro Kinjo, Crystal-Leigh Clitheroe, Haruki Sunagawa, Thomas Bourguignon, Seikoh Saitoh","doi":"10.1080/23802359.2025.2505789","DOIUrl":"10.1080/23802359.2025.2505789","url":null,"abstract":"<p><p>Taimo is a paddy cultivar of Taro (<i>Colocasia esculenta</i> (L.) Schott) that is traditionally consumed in the Ryukyu Archipelago, Japan. Its origin remains unknown, although it has been identified as belonging to a haplotype commonly found in tropical and subtropical regions. However, previously developed genetic markers were insufficient to resolve the genetic relationships among cultivars that share the same haplotype. To address this limitation, we sequenced the complete chloroplast genome of cv. Taimo. The comparison of the obtained sequence with the currently published complete and partial chloroplast genomes revealed that cv. Taimo is most closely related to the paddy cultivar Lipu from southern mainland China. These findings suggest that the ancestors of cv. Taimo were introduced to the Ryukyus from China.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"508-512"},"PeriodicalIF":0.5,"publicationDate":"2025-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12093797/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A complete mitochondrial genome of the large scaled tongue sole (<i>cynoglossus macrolepidotus</i>) from the east China sea.","authors":"Haojie Zhuo, Hao Yuan, Guang Yang","doi":"10.1080/23802359.2025.2509016","DOIUrl":"10.1080/23802359.2025.2509016","url":null,"abstract":"<p><p>The Large-scaled tongue sole (<i>Cynoglossus macrolepidotus</i>, Bleeker, 1851) is an economically important fish species in China. This study presents the first complete mitochondrial genome of the Large-scaled tongue sole, with a total length of 16,647 base pairs. The genome includes 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. Phylogenetic analysis reveals that <i>C. macrolepidotus</i> is genetically closer to <i>Cynoglossus joyneri</i> and <i>Cynoglossus puncticeps</i> than to other species within the <i>Cynoglossus</i> genus. This study provides valuable genetic data for future research on <i>C. macrolepidotus</i> and contributes to phylogenetic studies within the Cynoglossidae family.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"518-521"},"PeriodicalIF":0.5,"publicationDate":"2025-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12090253/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144111396","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome of <i>Stachyurus himalaicus</i>.","authors":"Yushuang Chen, Rui Li, Shubao Wang, Shuang Xiong, Yuan Huang","doi":"10.1080/23802359.2025.2505791","DOIUrl":"10.1080/23802359.2025.2505791","url":null,"abstract":"<p><p>The complete chloroplast genome of <i>Stachyurus himalaicus</i> Hook. f. et Thoms. ex Benth. was sequenced and analyzed. The circular cp genome of <i>S. himalaicus</i> is 162,642 bp in length, consisting of inverted repeats (IRs; 26,437 bp), small single-copy (SSC; 18,762 bp), and large single-copy regions (LSC; 91,006 bp). The genome contains 131 genes (86 protein-coding, 37 tRNA, 8 rRNA) with 37.0% GC content. Phylogenetic analysis revealed the monophyly of Stachyuraceae, and <i>S. himalaicus</i> was sister to the other 3 <i>Stachyurus</i> species examined. Our results provide useful genetic resources for further studies on the evolution and phylogeny of Stachyuraceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"513-517"},"PeriodicalIF":0.5,"publicationDate":"2025-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12086943/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144101115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}