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First mitochondrial genome of Lutjanus ehrenbergii_ Peters 1869 (Lutjaniformes: Lutjanidae: Lutjanus) and phylogenetic analysis. 1869年家兔线粒体基因组首个（家兔目：家兔科：家兔）及其系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-01-03 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2435917
Zengliang Miao, Shiyi Chen, Tingting Wang, Xun Jin, Shufei Zhang, Sixu Zheng, Yunpeng Wang, Taobo Feng, Luxiu Gao, Jian Chen
{"title":"First mitochondrial genome of <i>Lutjanus ehrenbergii</i>_ Peters 1869 (Lutjaniformes: Lutjanidae: Lutjanus) and phylogenetic analysis.","authors":"Zengliang Miao, Shiyi Chen, Tingting Wang, Xun Jin, Shufei Zhang, Sixu Zheng, Yunpeng Wang, Taobo Feng, Luxiu Gao, Jian Chen","doi":"10.1080/23802359.2024.2435917","DOIUrl":"https://doi.org/10.1080/23802359.2024.2435917","url":null,"abstract":"<p><p>The complete mitochondrial genome of the <i>Lutjanus ehrenbergii</i> was sequenced by Sanger platform. The circular mitogenome of <i>L. ehrenbergii</i> (16,512 bp) encoded the typical 37 genes, and one non-coding regions. All of the protein-encoding genes were located on the H chain except ND6. The nucleotide composition was A (28.04%), T (24.84%), C (30.89%) and G (16.23%). Phylogenetic analysis based on the 13PCGs sequences showed that <i>L. ehrenbergii</i> was closely related to the sister species of <i>Lutjanus russellii</i> and <i>Lutjanus carponotatus</i>. These studies provided important mitochondrial genome data of <i>L. ehrenbergii</i>, phylogenetic tree analysis revealed the position of <i>L. ehrenbergii</i> in Lutjaniformes.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"72-76"},"PeriodicalIF":0.5,"publicationDate":"2025-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703075/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete mitochondrial genomes of Culicoides brevitarsis and Culicoides imicola biting midge vectors of Bluetongue Virus. 蓝舌病病毒传播媒介短命库蠓和伊米科库蠓线粒体全基因组分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-01-03 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2447750
Khandaker Asif Ahmed, Anjana Karawita, Melissa J Klein, Luana Fiorella Mincarelli, Barbara Secondini, Giuseppe Satta, Massimo Ancora, Cipriano Foxi, Marco Di Domenico, Michela Quaglia, Maria Goffredo, Alessio Lorusso, Cesare Cammà, Leon Court, Rahul V Rane, Tom K Walsh, Prasad N Paradkar, Debbie Eagles, Gunjan Pandey, Christopher M Hardy
{"title":"Complete mitochondrial genomes of <i>Culicoides brevitarsis</i> and <i>Culicoides imicola</i> biting midge vectors of Bluetongue Virus.","authors":"Khandaker Asif Ahmed, Anjana Karawita, Melissa J Klein, Luana Fiorella Mincarelli, Barbara Secondini, Giuseppe Satta, Massimo Ancora, Cipriano Foxi, Marco Di Domenico, Michela Quaglia, Maria Goffredo, Alessio Lorusso, Cesare Cammà, Leon Court, Rahul V Rane, Tom K Walsh, Prasad N Paradkar, Debbie Eagles, Gunjan Pandey, Christopher M Hardy","doi":"10.1080/23802359.2024.2447750","DOIUrl":"https://doi.org/10.1080/23802359.2024.2447750","url":null,"abstract":"<p><p>Biting midges (<i>Culicoides</i> spp.) are important vectors of several insect borne arboviruses but are underrepresented in terms of availability of high-resolution genomic resources. We assembled and annotated complete mitochondrial genomes for two <i>Culicoides</i> species, namely <i>C. brevitarsis</i> and <i>C. imicola</i> which are proven vectors for Bluetongue Virus (BTV). We used both long read and short read sequencing technologies to assemble the circular genomes. The genome sizes are 17,100 bp and 17,031 bp, respectively, all comprising 37 genes, including 13 protein, 22 tRNA, two rRNA coding genes, and one non-coding AT rich control region. The gene organizations and orientations are comparable to other available <i>Culicoides</i> mitogenomes, except for a translocation of <i>ND2</i> and six tRNA genes in both <i>C. brevitarsis</i> and <i>C. imicola</i>. Eleven protein-coding genes encode a full TAA stop codon, while two (<i>ND5</i>, <i>COX3</i>) are completed by mRNA polyadenylation. Phylogenetic analysis of the mitogenomes showed <i>C. brevitarsis</i> and <i>C. imicola</i> form a monophyletic group. The sequences of these mitogenomes contribute to a baseline of molecular tools for diagnostics and surveillance for use by World Organisation for Animal Health (WOAH) reference laboratories for monitoring vectors of emerging diseases.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"67-71"},"PeriodicalIF":0.5,"publicationDate":"2025-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703489/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Aster scaber Thunb. 1784 (Asteraceae). 标题紫菀1784 （Asteraceae）叶绿体全基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-30 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2447744
Yue Sheng, Yu-Tong Huang, Yan-Ping Xing, Chun-Yan Li, Zi-Xin Tang, Yan-Yun Yang, Liang Xu
{"title":"The complete chloroplast genome of <i>Aster scaber</i> Thunb. 1784 (Asteraceae).","authors":"Yue Sheng, Yu-Tong Huang, Yan-Ping Xing, Chun-Yan Li, Zi-Xin Tang, Yan-Yun Yang, Liang Xu","doi":"10.1080/23802359.2024.2447744","DOIUrl":"https://doi.org/10.1080/23802359.2024.2447744","url":null,"abstract":"<p><p><i>Aster scaber</i> Thunb. (1784) is primarily distributed in eastern Asia,  has a total length of 152,778 bp and consists of a large single copy (LSC) region of 84,517 bp, a small single copy (SSC) region of 18,277 bp, and two inverted repeat (IRs) regions of 24,992 bp . The GC content is 37.31%. A total of 133 genes were annotated, including 88 protein-coding genes, 8 rRNA genes, and 37 tRNA genes. Phylogenetic analysis using the maximum likelihood method showed that <i>A. scaber</i> is closely related to <i>Aster</i> species. This study provides chloroplast genome resource for further research on the phylogenetics and resource development of <i>A. scaber.</i></p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"57-62"},"PeriodicalIF":0.5,"publicationDate":"2024-12-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703284/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951375","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete chloroplast genome sequence of Karelinia caspia (Pall.) Less. (Compositae). 羊绒甘蓝叶绿体全基因组序列更少。(菊科)。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-25 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2444596
Wenjuan Huang, Shuangfei Song, Chengzhi Peng, Hongyan Jin, Peipei Jiao, Zhihua Wu
{"title":"Complete chloroplast genome sequence of <i>Karelinia caspia</i> (Pall.) Less. (Compositae).","authors":"Wenjuan Huang, Shuangfei Song, Chengzhi Peng, Hongyan Jin, Peipei Jiao, Zhihua Wu","doi":"10.1080/23802359.2024.2444596","DOIUrl":"https://doi.org/10.1080/23802359.2024.2444596","url":null,"abstract":"<p><p><i>Karelinia caspia</i> (Compositae) is a perennial herbaceous plant owning high economic, feeding and medicinal values. It is widely distributed in desertification and saline alkali areas. The complete chloroplast genome was firstly reported in this study. The chloroplast genome of K. caspia with a total size of 151,239 bp consists of two inverted repeats separated by a large single-copy region and a small single-copy region. Its chloroplast genome contains 129 genes, including 85 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. Also, a total of 62 simple sequence repeats were identified. These results will be useful for study on the evolution and genetic diversity of K. caspia in the future.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"52-56"},"PeriodicalIF":0.5,"publicationDate":"2024-12-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703384/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan. 日本雪域特有种阴道堇菜（堇菜科）的叶绿体全基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-24 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2444595
Yayoi Takahashi, Masato Fujiwara, Masaaki Ozeki, Masayuki U Saito, Takaya Iwasaki
{"title":"The complete chloroplast genome of <i>Viola vaginata</i> (Violaceae), an endemic species of the snowy region in Japan.","authors":"Yayoi Takahashi, Masato Fujiwara, Masaaki Ozeki, Masayuki U Saito, Takaya Iwasaki","doi":"10.1080/23802359.2024.2444595","DOIUrl":"https://doi.org/10.1080/23802359.2024.2444595","url":null,"abstract":"<p><p><i>Viola vaginata</i>, a perennial herb in subsection <i>Stolonosae</i>, is endemic to the snowy mountainous regions on the Sea of Japan side of Japan. Its complete chloroplast genome was 156,056 bp in length, comprising one large single-copy region (86,407 bp), one small single-copy region (17,301 bp), and two inverted repeat regions (27,174 bp each). It contained 111 unique genes, including 77 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Phylogenetic analysis placed <i>V. vaginata</i> in a clade with subsection <i>Biobatae</i> species and some <i>Patellares</i> species, while other <i>Patellares</i> species formed a distinct clade, contrasting with previous nuclear ITS results. These findings highlight the phylogenetic complexity within <i>Viola.</i></p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"47-51"},"PeriodicalIF":0.5,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703538/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951393","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The plastid genome characters and phylogenetic status of the endemic species Trichosanthes sunhangii D. G. Zhang, Z. M. Li, Qun Liu & T. Deng 2021 (Cucurbitaceae) in the Shennongjia forestry district of China. 张德国，李志明，刘群，邓涛。神农架林区特有种葫芦科植物（Trichosanthes sunhangi）质体基因组特征及系统发育状况。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-24 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2444606
Lufeng Liu, Jingyi Peng, Qun Liu, Yining Di
{"title":"The plastid genome characters and phylogenetic status of the endemic species <i>Trichosanthes sunhangii</i> D. G. Zhang, Z. M. Li, Qun Liu & T. Deng 2021 (Cucurbitaceae) in the Shennongjia forestry district of China.","authors":"Lufeng Liu, Jingyi Peng, Qun Liu, Yining Di","doi":"10.1080/23802359.2024.2444606","DOIUrl":"https://doi.org/10.1080/23802359.2024.2444606","url":null,"abstract":"<p><p><i>Trichosanthes sunhangii</i> (Cucurbitaceae) is an endemic species native to the Shennongjia forestry district of China, whose plastid genome was reported in this study. The whole genome exhibits the typical quadripartite structure with 156,906 bp in size. A total of 130 genes were identified, containing 85 protein-coding genes (CDS), 37 tRNA, and 8 rRNA genes. Phylogenetic reconstruction based on 83 shared CDS sequences reaffirmed the status of <i>T. sunhangii</i> within the Sect. <i>Foliobracteola</i>, revealing close relationships with morphologically similar species, <i>T. kirilowii</i> and <i>T. rosthornii</i>. Our findings will provide a significant foundation for future investigations into the evolution, conservation, and potential utilization of this species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"1-5"},"PeriodicalIF":0.5,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703028/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Leptopilina myrica (Hymenoptera: Figitidae). 杨梅小蜂线粒体全基因组研究（膜翅目：蜂科）。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-24 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2444643
Junwei Zhang, Zhaohe Lu, Zhi Dong, Haiyang Wang, Jieyu Shan, Zixuan Xu, Jianhua Huang, Jiani Chen
{"title":"The complete mitochondrial genome of <i>Leptopilina myrica</i> (Hymenoptera: Figitidae).","authors":"Junwei Zhang, Zhaohe Lu, Zhi Dong, Haiyang Wang, Jieyu Shan, Zixuan Xu, Jianhua Huang, Jiani Chen","doi":"10.1080/23802359.2024.2444643","DOIUrl":"https://doi.org/10.1080/23802359.2024.2444643","url":null,"abstract":"<p><p>The complete mitochondrial genome of <i>Leptopilina myrica</i> Chen, 2023 has been sequenced and analyzed for the first time. The total length we assembled is 15,448 bp, which comprises 13 PCGs, 22 tRNAs, 2 rRNAs, and a CR. The overall nucleotide composition consists of 41.1% A, 37.7% T, 14.7% C, and 6.5% G, respectively. The nucleotide sequences of 13 PCGs and 2 rRNAs from <i>L. myrica</i> and another 10 <i>Drosophila</i> parasitoid species were used for phylogenetic analysis by MrBayes, with one species from Drosophilidae as an outgroup. The result shows that <i>L. myrica</i> is closely related to <i>L. syphax</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"11-14"},"PeriodicalIF":0.5,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11702986/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The plastid genome and phylogenetic status of Sinosenecio eriopodus C. Jeffrey & Y. L. Chen 1984 (Asteraceae). 陈玉林、陈玉林、陈玉林等。1984（菊科）。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-23 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2444605
Yao Sun, Cheng Zhang, Jingyi Peng, Qiang Zhou
{"title":"The plastid genome and phylogenetic status of <i>Sinosenecio eriopodus</i> C. Jeffrey & Y. L. Chen 1984 (Asteraceae).","authors":"Yao Sun, Cheng Zhang, Jingyi Peng, Qiang Zhou","doi":"10.1080/23802359.2024.2444605","DOIUrl":"https://doi.org/10.1080/23802359.2024.2444605","url":null,"abstract":"<p><p>The genus <i>Sinosenecio</i> B. Nordenstam (1978) is a challenging taxonomic group with complex infrageneric relationships. Here, we newly report the plastid genome of S. <i>eriopodus</i> (Cumm.) C. Jeffrey & Y. L. Chen (1984). Whole genome exhibited a typical quadratic structure with a total size of 151,212 bp and 132 genes. We revealed for the first time that the matK and rpoA were positively selected genes within <i>Sinosenecio</i>. Phylogenetic reconstruction based on whole plastid genome sequences indicated that <i>S. eriopodus</i> was not clustered into a monophyletic clade with members belonging to the S. <i>oldhamianus</i> group of <i>Sinosenecio</i> but rather was closely related to some genera in the subtribe Tussilaginae s.s. of Asteraceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"26-31"},"PeriodicalIF":0.5,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703530/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951405","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of the complete plastid genome of Clivia mirabilis (Amaryllidaceae). 紫Clivia mirabilis （Amaryllidaceae）质体全基因组的研究。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-23 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2444637
Ling Yue, Xiu-Li Feng, Dan Li, Hai-Hong Wu, Jing Meng, Xing-Hua Zhao
{"title":"Characterization of the complete plastid genome of <i>Clivia mirabilis</i> (Amaryllidaceae).","authors":"Ling Yue, Xiu-Li Feng, Dan Li, Hai-Hong Wu, Jing Meng, Xing-Hua Zhao","doi":"10.1080/23802359.2024.2444637","DOIUrl":"https://doi.org/10.1080/23802359.2024.2444637","url":null,"abstract":"<p><p><i>Clivia mirabilis</i> Rourke 2002 is an evergreen herbaceous flower with high ornamental value. In this study, we sequenced the complete chloroplast (cp) genome of <i>C. mirabilis</i> and reported it for the first time. The cp genome was 158,914 base pairs (bp) in total length, including two inverted repeats (IRs, 27,052 bp), separated by a large single-copy region (LSC, 86,519 bp) and a small single-copy region (SSC, 18,291 bp). There are 133 different genes in the cp genome of <i>Clivia mirabilis</i>, including 87 protein-coding genes, 38 transfer RNA genes, and eight ribosomal RNA genes. The overall GC content of the cp genome was 37.9%. Our phylogenetic analysis showed that <i>C. mirabilis</i> formed a monophyletic clade with the other sampled species of <i>Clivia</i>, falling into the Amaryllidoideae clade. Our findings could be used to identify and analyze the genetic diversity of <i>C. mirabilis</i> and provide new data for taxonomic and phylogenetic studies of <i>Clivia</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"42-46"},"PeriodicalIF":0.5,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703478/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome sequence of Lycium barbarum var. implicatum (Solanaceae), a new species of wolfberry from the Yellow River Basin in Ningxia, China. 宁夏黄河流域枸杞新种枸杞（枸杞科）叶绿体全基因组序列研究。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-23 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2444598
Bo Zhang, Wangsuo Liu, Darifu Ba, Zhiguo Jiang
{"title":"The complete chloroplast genome sequence of <i>Lycium barbarum</i> var. <i>implicatum</i> (Solanaceae), a new species of wolfberry from the Yellow River Basin in Ningxia, China.","authors":"Bo Zhang, Wangsuo Liu, Darifu Ba, Zhiguo Jiang","doi":"10.1080/23802359.2024.2444598","DOIUrl":"https://doi.org/10.1080/23802359.2024.2444598","url":null,"abstract":"<p><p><i>Lycium barbarum</i> var. <i>implicatum</i> (2010), is a new variety of <i>L. barbarum</i> in Solanaceae. Here, we sequenced, assembled, and annotated the complete chloroplast (cp) genome of <i>L. barbarum</i> var. <i>implicatum</i>. Results showed that the complete cp genome of <i>L. barbarum</i> var. <i>implicatum</i> was 154,888 bp in length, containing a large single copy (LSC) region of 85,894 bp, a pair of inverted repeats (IR) region of 25,393 bp, and a small single copy (SSC) region of 18,208 bp. Maximum-likelihood (ML) phylogenetic tree elucidated that <i>L. barbarum</i> var. <i>implicatum</i> was sister to <i>L. ruthenicum.</i> Our results provide useful information for future phylogenetic studies in the family of Solanaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"15-20"},"PeriodicalIF":0.5,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703529/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142951395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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