{"title":"Characterization and phylogenetic analysis of the complete mitochondrial genome of <i>Fomitopsis palustris</i> (Berk. & M.A. Curtis) Gilb. & Ryvarden, 1985 (Polyporales: Fomitopsidaceae).","authors":"Wei Gao, Shuyi Chen, Qiang Li","doi":"10.1080/23802359.2025.2509806","DOIUrl":"10.1080/23802359.2025.2509806","url":null,"abstract":"<p><p><i>Fomitopsis palustris</i> (Berk. & M.A. Curtis) Gilb. & Ryvarden, 1985 is a well-known brown-rot basidiomycete. However, the complete mitochondrial genome of <i>F. palustris</i> from China remains uncharacterized. In this study, we present the complete mitochondrial genome sequence of <i>F. palustris</i>, which spans 64,223 bp and has a GC content of 23.89%. The genome contains 15 essential protein-coding genes, 10 other ORFs, nine intronic ORFs, 26 tRNAs, and two rRNAs. Phylogenetic analysis via Bayesian inference (BI) was conducted to elucidate the evolutionary relationships among 10 closely related species, revealing well-supported clades and revealing the close relationship between <i>F. palustris</i> and <i>F. pinicola</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"532-536"},"PeriodicalIF":0.5,"publicationDate":"2025-05-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12107645/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144160260","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of <i>Tenguna medogensis</i> (Hemiptera: Dictyopharidae).","authors":"Fang Yu, Zhi-Shun Song","doi":"10.1080/23802359.2025.2509805","DOIUrl":"10.1080/23802359.2025.2509805","url":null,"abstract":"<p><p>In this study, we sequenced and annotated the complete mitochondrial genome of <i>Tenguna medogensis</i> Song & Liang, 2007 (Hemiptera: Dictyopharidae). The mitogenome was 15,400 bp in length with a high A + T content (76.95%), containing 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a control region. All protein-coding genes started with ATC/ATG/ATT, except for <i>nad1</i> and <i>nad5</i>, which used GTG. The predicted secondary structures of all tRNA genes were typical cloverleaf except for <i>trnS</i> (gcu) and <i>trnV</i> (uac), lacking the dihydrouridine stem. In the maximum-likelihood phylogenetic result of planthoppers, <i>Tenguna</i> was closely related to <i>Metaurus</i> in Dictyopharidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"522-527"},"PeriodicalIF":0.5,"publicationDate":"2025-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12107646/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144160263","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Marylin Miga, Aqilah Awg Abdul Rahman, Sivachandran Parimannan, Heera Rajandas, Frankie Thomas Sitam, Lili Tokiman, Jai Kemalok, Mohd Shahir Shamsir, Faezah Mohd Salleh
{"title":"Complete mitochondrial genome data and phylogenetic analysis of the Plain Banded Awl, <i>Hasora vitta</i> (Lepidoptera: Hesperiidae: Coeliadinae) from Malaysia.","authors":"Marylin Miga, Aqilah Awg Abdul Rahman, Sivachandran Parimannan, Heera Rajandas, Frankie Thomas Sitam, Lili Tokiman, Jai Kemalok, Mohd Shahir Shamsir, Faezah Mohd Salleh","doi":"10.1080/23802359.2025.2509807","DOIUrl":"10.1080/23802359.2025.2509807","url":null,"abstract":"<p><p>We report the complete mitogenome of <i>Hasora vitta</i> (Plain Banded Awl) sampled from Malaysia. The mitogenome is 15,289 bp long, comprising of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and a control region. All PCGs were initiated by the typical ATN codon, except for COX1 with a CGA start codon. Two PCGs (COX1 and COX2) were terminated with an incomplete stop codon T. Phylogenetic analysis highly supported the placement of <i>Hasora vitta</i> from Malaysia within Coeliadinae and is clustered with two <i>Hasora vitta</i> samples from China.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"528-531"},"PeriodicalIF":0.5,"publicationDate":"2025-05-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12107662/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144160261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Soon-Ho Kwon, Jin-Sung Huh, Sik-Won Choi, Su Jin Park, Hyunmo Choi
{"title":"Complete chloroplast genome sequence of <i>Quercus salicina</i> Blume (Fagaceae).","authors":"Soon-Ho Kwon, Jin-Sung Huh, Sik-Won Choi, Su Jin Park, Hyunmo Choi","doi":"10.1080/23802359.2025.2503396","DOIUrl":"10.1080/23802359.2025.2503396","url":null,"abstract":"<p><p><i>Quercus salicina</i> Blume 1851, an evergreen broad-leaved species belonging to the family Fagaceae, is primarily distributed from southern Korea to Japan. In this study, we comprehensively analyzed the chloroplast genome of <i>Q. salicina</i>. Its genome, with a quadripartite structure, spanned 160,801 bp and had a GC content of 36.58%. Annotation revealed 131 genes, including 86 protein-coding genes, eight rRNA genes, and 37 tRNA genes. These intricacies in the genome were further confirmed by the presence of introns in multiple genes. Phylogenetic analysis of 19 Fagales species elucidated their evolutionary relationships, with <i>Fagus engleriana</i> branching early and <i>Q. salicina</i> showing a close relationship with <i>Q. gilva</i>. This study enhances our understanding of the genetic makeup of <i>Q. salicina</i> and its evolutionary dynamics within the <i>Fagales</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"504-507"},"PeriodicalIF":0.5,"publicationDate":"2025-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12093796/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Sequencing of the chloroplast genome of Taimo, a paddy cultivar of Taro (<i>Colocasia esculenta</i> (L.) Schott) in the Ryukyu Archipelago.","authors":"Reina Takaesu, Yukihiro Kinjo, Crystal-Leigh Clitheroe, Haruki Sunagawa, Thomas Bourguignon, Seikoh Saitoh","doi":"10.1080/23802359.2025.2505789","DOIUrl":"10.1080/23802359.2025.2505789","url":null,"abstract":"<p><p>Taimo is a paddy cultivar of Taro (<i>Colocasia esculenta</i> (L.) Schott) that is traditionally consumed in the Ryukyu Archipelago, Japan. Its origin remains unknown, although it has been identified as belonging to a haplotype commonly found in tropical and subtropical regions. However, previously developed genetic markers were insufficient to resolve the genetic relationships among cultivars that share the same haplotype. To address this limitation, we sequenced the complete chloroplast genome of cv. Taimo. The comparison of the obtained sequence with the currently published complete and partial chloroplast genomes revealed that cv. Taimo is most closely related to the paddy cultivar Lipu from southern mainland China. These findings suggest that the ancestors of cv. Taimo were introduced to the Ryukyus from China.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"508-512"},"PeriodicalIF":0.5,"publicationDate":"2025-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12093797/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144120118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A complete mitochondrial genome of the large scaled tongue sole (<i>cynoglossus macrolepidotus</i>) from the east China sea.","authors":"Haojie Zhuo, Hao Yuan, Guang Yang","doi":"10.1080/23802359.2025.2509016","DOIUrl":"10.1080/23802359.2025.2509016","url":null,"abstract":"<p><p>The Large-scaled tongue sole (<i>Cynoglossus macrolepidotus</i>, Bleeker, 1851) is an economically important fish species in China. This study presents the first complete mitochondrial genome of the Large-scaled tongue sole, with a total length of 16,647 base pairs. The genome includes 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA) genes, and two ribosomal RNA (rRNA) genes. Phylogenetic analysis reveals that <i>C. macrolepidotus</i> is genetically closer to <i>Cynoglossus joyneri</i> and <i>Cynoglossus puncticeps</i> than to other species within the <i>Cynoglossus</i> genus. This study provides valuable genetic data for future research on <i>C. macrolepidotus</i> and contributes to phylogenetic studies within the Cynoglossidae family.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"518-521"},"PeriodicalIF":0.5,"publicationDate":"2025-05-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12090253/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144111396","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome of <i>Stachyurus himalaicus</i>.","authors":"Yushuang Chen, Rui Li, Shubao Wang, Shuang Xiong, Yuan Huang","doi":"10.1080/23802359.2025.2505791","DOIUrl":"10.1080/23802359.2025.2505791","url":null,"abstract":"<p><p>The complete chloroplast genome of <i>Stachyurus himalaicus</i> Hook. f. et Thoms. ex Benth. was sequenced and analyzed. The circular cp genome of <i>S. himalaicus</i> is 162,642 bp in length, consisting of inverted repeats (IRs; 26,437 bp), small single-copy (SSC; 18,762 bp), and large single-copy regions (LSC; 91,006 bp). The genome contains 131 genes (86 protein-coding, 37 tRNA, 8 rRNA) with 37.0% GC content. Phylogenetic analysis revealed the monophyly of Stachyuraceae, and <i>S. himalaicus</i> was sister to the other 3 <i>Stachyurus</i> species examined. Our results provide useful genetic resources for further studies on the evolution and phylogeny of Stachyuraceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"513-517"},"PeriodicalIF":0.5,"publicationDate":"2025-05-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12086943/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144101115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome sequence of <i>Allophylus viridis</i> (Sapindoideae, Sapindaceae), an important medicinal plant.","authors":"Zhixin Wang, Limin Cao, Shuai Wang, Na Wang","doi":"10.1080/23802359.2025.2503402","DOIUrl":"10.1080/23802359.2025.2503402","url":null,"abstract":"<p><p>The present study determined the complete chloroplast genome of <i>Allophylus viridis,</i> an important medicinal plant. The chloroplast genome of this species was 169,213 bp in length, consisting of a pair of inverted repeats of 32,829 bp separated by the large single copy of 85,297 bp and small single copy of 18,258 bp regions. 134 genes were determined, including 89 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the complete chloroplast genome was 38.0%. A phylogenetic analysis indicated that <i>A. viridis</i> was closely related to other species of Sapindoideae. This study offers a valuable resource for conservation biology, genetic engineering, and medicinal research.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"495-498"},"PeriodicalIF":0.5,"publicationDate":"2025-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12086937/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144101761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitogenome of <i>Theloderma albopunctatum</i> (Liu & Hu 1962) (Anura: Rhacophoridae) from the Karst areas of southwestern China.","authors":"Jiang Yang, Ming-Le Mao, Cui-Pao He, Qiu-Yuan Lu, Chen-Rui Yan, Ning Xiao, Jiang Zhou","doi":"10.1080/23802359.2025.2498743","DOIUrl":"10.1080/23802359.2025.2498743","url":null,"abstract":"<p><p>This study reports and characterizes the complete mitogenome of <i>Theloderma albopunctatum</i>. The mitogenome was 15,780 bp in length and contained 13 protein-coding genes, 22 transfer RNA genes, and two ribosomal RNA genes, with 29.35% A, 25.17% T, 14.24% G, and 31.24% C. The original data were assembled and annotated, and the complete mitochondrial genome was mapped. The phylogenetic tree obtained in this study supports the division of the Rhacophorinae and Buergeriinae subfamilies. This mitogenome provides a valuable resource for understanding evolutionary relationships within the Rhacophoridae family.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"499-503"},"PeriodicalIF":0.5,"publicationDate":"2025-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12086936/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144101997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yu-Jia Pan, Yang-Yang Lin, Chang-Fen Tian, Meng Li, Xian-Rong Wang
{"title":"The complete chloroplast genome of <i>Sorbus monbeigii</i> (Cardot) N.P.Balakr. 1970 (Rosaceae) and its phylogenetic analysis.","authors":"Yu-Jia Pan, Yang-Yang Lin, Chang-Fen Tian, Meng Li, Xian-Rong Wang","doi":"10.1080/23802359.2025.2503398","DOIUrl":"10.1080/23802359.2025.2503398","url":null,"abstract":"<p><p><i>Sorbus monbeigii</i> (Cardot) N.P.Balakr. is a woody tree of the Rosaceae family. Interspecific hybridization is prevalent in <i>Sorbus</i>, and the limited molecular data suggest that the taxonomic status requires further study. Therefore, we assembled and annotated the complete chloroplast genome of <i>S. monbeigii</i>. The chloroplast genome of <i>S. monbeigii</i> is 160,174 bp in length and consist of 106 genes, including 74 protein-coding genes, 4 rRNA genes and 28 tRNA genes. Phylogenetic analysis revealed that <i>S. monbeigii</i> belongs to <i>Sorbus</i> subg. <i>Albocarmesinae</i>. The report of the chloroplast genome of <i>S. monbeigii</i> enriches genome data and serves as a reference for future classification and genetic diversity.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 6","pages":"490-494"},"PeriodicalIF":0.5,"publicationDate":"2025-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12086902/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144102228","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}