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Mitochondrial DNA. Part B, Resources最新文献

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Complete mitochondrial genome of orthotomus sutorius (passeriformes: cisticolidae).
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-04-02 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2487062
Hui Gao, Zhicheng Yao, Yanyan Zhao, Minhao Chen, Zongzhi Li, Xue Meng Zhou, Yuanguang Wen, Xiaoguo Zhou, Yongjie Huang
{"title":"Complete mitochondrial genome of <i>orthotomus sutorius</i> (passeriformes: cisticolidae).","authors":"Hui Gao, Zhicheng Yao, Yanyan Zhao, Minhao Chen, Zongzhi Li, Xue Meng Zhou, Yuanguang Wen, Xiaoguo Zhou, Yongjie Huang","doi":"10.1080/23802359.2025.2487062","DOIUrl":"10.1080/23802359.2025.2487062","url":null,"abstract":"<p><p>The complete mitogenome of Orthotomus sutorius Pennant, 1769 this species was sequenced using an Illumina Novaseq platform. It is 16,982 bp in length and consists of 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes (12S rRNA and 16S rRNA) and a control region (CR). We reconstructed a phylogenetic tree based on the mitogenome sequences of 10 species from family Cisticolidae with its adjacent families, as well as one outgroup. Phylogenetic analysis indicated that <i>Orthotomus sutorius</i> is well clustered with <i>Cisticola juncidis</i>. The new mitogenome data would provide useful information for evolutionary research on <i>O. sutorius</i> and the family Cisticolidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 5","pages":"357-360"},"PeriodicalIF":0.5,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11966981/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143780546","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete mitogenome and phylogenetic analysis of Brassica oleracea L. var. italica Plenck.
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-04-02 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2024.2423830
Xuli Pei, Zange Jing, Muneeb Ahmad Wani, Zheng Tang, Zhenchao Zhang, Qian Xu, Meiqi Tao, Liling Mo, Peng Jiao
{"title":"Complete mitogenome and phylogenetic analysis of <i>Brassica oleracea</i> L. var. <i>italica</i> Plenck.","authors":"Xuli Pei, Zange Jing, Muneeb Ahmad Wani, Zheng Tang, Zhenchao Zhang, Qian Xu, Meiqi Tao, Liling Mo, Peng Jiao","doi":"10.1080/23802359.2024.2423830","DOIUrl":"10.1080/23802359.2024.2423830","url":null,"abstract":"<p><p>In this study, we assembled and annotated the mitochondrial genome (mitogenome) of <i>B. oleracea</i> L. var. <i>italica</i> Plenck. This mitogenome was found to span 219 964 bp, with a GC content of 45.25%. It comprised 61 genes, including 35 protein-coding, 23 transfer RNA, and three ribosomal RNA genes. Among these, only 11 genes contained introns. Codon preference analysis revealed a bias toward codons ending in A/U bases. A phylogenetic analysis demonstrated a close relationship between <i>B. oleracea</i> L. var. <i>italica</i> Plenck, <i>B. oleracea</i> L. botrytis, and <i>B. oleracea</i> var. <i>capitata</i>. This reference mitogenome provides a basis for research on genetic conservation, phylogenetic relationships, and molecular breeding strategies among members of the <i>Brassica</i> genus.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 5","pages":"331-336"},"PeriodicalIF":0.5,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11966974/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143780548","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Trichochrysea japana (Motschulsky, 1855) (Coleoptera: Chrysomeloidea) and its phylogenetic analyses.
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-04-02 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2487217
Lulu Huang, Hang Zhang, Ying Chen, Xinquan Li, Jiankai Wu, Songqing Wu
{"title":"The complete mitochondrial genome of <i>Trichochrysea japana</i> (Motschulsky, 1855) (Coleoptera: Chrysomeloidea) and its phylogenetic analyses.","authors":"Lulu Huang, Hang Zhang, Ying Chen, Xinquan Li, Jiankai Wu, Songqing Wu","doi":"10.1080/23802359.2025.2487217","DOIUrl":"10.1080/23802359.2025.2487217","url":null,"abstract":"<p><p><i>Trichochrysea japana</i> (Motschulsky, 1855) (Coleoptera: Chrysomelidae) is a horticultural pest with a widespread distribution. However, the complete mitochondrial genome (mitogenome) of this species has not been available . In this study, we sequenced and analyzed the first complete mitogenome of <i>T. japana</i>. The mitogenome is 15,681 bp in length (GenBank accession number: OR387477) and includes 13 typicalPCGs, 22 tRNAs, two rRNAs, and two control regions. Furthermore, phylogenetic analysis indicated that <i>T. japana</i> is closely related to <i>Basilepta melanopus</i>, <i>B. fulvipes</i>, and <i>Colasposoma dauricum</i>. The <i>T. japana</i> mitogenome data provides valuable insights into the genetic evolution of this species .</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 5","pages":"352-356"},"PeriodicalIF":0.5,"publicationDate":"2025-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11966972/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143780551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Halichoeres margaritaceus (Actinopterygii, Labridae).
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2485160
Xin Huang, Qi Zhou, Yiheng Xu, Qing Dong, Shitao Fang, Xiao Li, Yan Wu, Xunchao Cai
{"title":"The complete mitochondrial genome of <i>Halichoeres margaritaceus</i> (Actinopterygii, Labridae).","authors":"Xin Huang, Qi Zhou, Yiheng Xu, Qing Dong, Shitao Fang, Xiao Li, Yan Wu, Xunchao Cai","doi":"10.1080/23802359.2025.2485160","DOIUrl":"10.1080/23802359.2025.2485160","url":null,"abstract":"<p><p><i>Halichoeres margaritaceus</i> Valenciennes 1839 is a polygynous species of coral fish. We sequenced the complete mitochondrial genome of <i>H. margaritaceus</i>, and conducted a comprehensive analysis to reveal its characteristics. Results showed that the mitochondrial genome is a closed circular molecule comprising 16,710 bp. Phylogenetic analysis based on mitochondrial whole genome sequences revealed <i>H. margaritaceus</i> as a sister group of <i>H. ornatissimus, H. tenuispinis</i>, etc., with maximal support. This study presents, for the first time, the complete mitochondrial genome of <i>H. margaritaceus</i>, offering valuable insights that can aid in future research on the biodiversity and conservation management of this species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 5","pages":"347-351"},"PeriodicalIF":0.5,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11960308/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143764562","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization and phylogenetic analysis of the chloroplast genome of Vicia kulingana (Fabaceae).
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2485168
Xingxing Chen, Zhuo Cheng, Zhongxin Duan, Dan Xi, Binsheng Luo
{"title":"Characterization and phylogenetic analysis of the chloroplast genome of <i>Vicia kulingana</i> (Fabaceae).","authors":"Xingxing Chen, Zhuo Cheng, Zhongxin Duan, Dan Xi, Binsheng Luo","doi":"10.1080/23802359.2025.2485168","DOIUrl":"10.1080/23802359.2025.2485168","url":null,"abstract":"<p><p><i>Vicia kulingana</i> L. H. Bailey 1920, a famous edible and medicinal plant, had its chloroplast genome sequenced in this study to determine its phylogenetic relationship with other related species. The research findings are as follows: 1. The chloroplast genome of <i>V. kulingana</i> was 125, 696 bp long and lacked an inverted repeat unit. 2. The genome contains a total of 102 genes, including 69 protein-coding genes, 28 tRNAs, and 5 ribosomal RNA. 3. Phylogenetic analysis revealed that <i>V. kulingana</i> and other three <i>Vicia</i> species are genetically closely related and are located on the same branch of the phylogenetic tree, indicating a sister group relationship among them. Our results support that <i>Lens</i> was treated as a synonym of <i>Vicia</i>. This study provides a foundation for the identification, classification, and exploration of genetic diversity within the <i>Vicia</i> genus.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 5","pages":"342-346"},"PeriodicalIF":0.5,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11960304/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143764559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Polygala tatarinowii (Polygalaceae).
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-28 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2482279
Yin-Huan Wang
{"title":"The complete chloroplast genome of <i>Polygala tatarinowii</i> (Polygalaceae).","authors":"Yin-Huan Wang","doi":"10.1080/23802359.2025.2482279","DOIUrl":"10.1080/23802359.2025.2482279","url":null,"abstract":"<p><p><i>Polygala tatarinowii</i> (Polygalaceae) is an annual herb with ecological, medicinal, and agricultural potential. Here, we present the inaugural assembly of its chloroplast genome (plastome). The total plastome spans 168,779 bp in length, featuring two expanded inverted repeat (IR) regions measuring 43,427 bp each, flanking a large single-copy (LSC) region of 73,712 bp and a small single-copy (SSC) region of 8213 bp. The plastome exhibits a GC content of 36.8%. Annotation of the plastome revealed a total of 112 unique genes, comprising 78 protein-coding genes, 30 tRNAs and 4 rRNAs. Uncommonly, two copies of the <i>trn</i>Q<sup>UUG</sup> gene were identified within the IRs, resulting in the presence of three <i>trn</i>Q<sup>UUG</sup> copies in this plastome. Additionally, reductions were observed in the <i>ycf</i>1 and <i>ycf</i>2 genes. Phylogenetic analysis effectively resolves the relationships among sampled Polygalaceae species. Our findings underscore the instrumental role of plastomes in advancing research on the systematics, phylogenetics, and genetic diversity of Polygalaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 5","pages":"337-341"},"PeriodicalIF":0.5,"publicationDate":"2025-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11956140/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143764561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genomes of Petrocodon mirus and Petrocodon hancei (Gesneriaceae).
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-27 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2482254
Yu-Chuan Qi, Ying Wei, Li-Hui Liu
{"title":"The complete chloroplast genomes of <i>Petrocodon mirus</i> and <i>Petrocodon hancei</i> (Gesneriaceae).","authors":"Yu-Chuan Qi, Ying Wei, Li-Hui Liu","doi":"10.1080/23802359.2025.2482254","DOIUrl":"10.1080/23802359.2025.2482254","url":null,"abstract":"<p><p>The genus <i>Petrocodon</i> is uniquely distributed in karst areas and exhibits high floral morphological diversity. We assembled and characterized the complete chloroplast genomes of <i>Petrocodon</i> <i>mirus</i> X.Z.Shi, J.X.Fu & L.H.Yang 2024 and <i>Petrocodon hancei</i> (Hemsl. 1890) A.Weber & Mich.Möller 2011. The genome sizes are 153,547 bp and 153,294 bp, respectively. Phylogenetic analysis revealed that <i>P. hancei</i> is closely related to <i>P. multiflorus</i>, while the position of <i>P. mirus</i> remains unclear. These findings provide genomic resources for studying genetic diversity in <i>Petrocodon</i> and Gesneriaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"325-329"},"PeriodicalIF":0.5,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11951312/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143753520","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete mitochondrial genome of Paraisaria gracilioides (Hypocreales: Ophiocordycipitaceae) and phylogenetic analysis.
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-27 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2482262
Minghao Tang, Wei Zheng, Yixi Zhang, Zihao Wang, Wei Huang, Qiaosun Huang, Feifan Wang, Yanan Wang, Luodong Huang
{"title":"Complete mitochondrial genome of <i>Paraisaria gracilioides</i> (Hypocreales: Ophiocordycipitaceae) and phylogenetic analysis.","authors":"Minghao Tang, Wei Zheng, Yixi Zhang, Zihao Wang, Wei Huang, Qiaosun Huang, Feifan Wang, Yanan Wang, Luodong Huang","doi":"10.1080/23802359.2025.2482262","DOIUrl":"10.1080/23802359.2025.2482262","url":null,"abstract":"<p><p><i>Paraisaria gracilioides</i> (Kobayasi) Luangsa-ard, Mongkolsamrit & Samson, originally described as <i>Ophiocordyceps gracilioides</i>, is a member of the Ophiocordycipitaceae, within the order Hypocreales. This study, presented the mitochondrial genome of <i>P. gracilioides</i> structured as a circular molecule spanning 181,140 bp, was larger than those of most Ophiocordycipitaceae species. Despite this size variation, encoding 49 genes, including 15 PCGs, 26 tRNAs, two rRNAs, and six ORFs. Phylogenetic analysis based on nucleotide sequences of 14 PCGs revealed that <i>P. gracilioides</i> clustered with <i>Paraisaria gracilis</i>, forming a subgroup within <i>Ophiocordyceps</i> species. The results contribute to refining the taxonomic framework of Ophiocordycipitaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"320-324"},"PeriodicalIF":0.5,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11951315/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143753516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Salsola sinkiangensis A.J.Li 1978 (Amaranthaceae).
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-24 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2482253
Lu Wang, Tao Dong, Miao Yu, Yanlei Liu, Lin Li, Shuo Shi
{"title":"The complete chloroplast genome of <i>Salsola sinkiangensis</i> A.J.Li 1978 (Amaranthaceae).","authors":"Lu Wang, Tao Dong, Miao Yu, Yanlei Liu, Lin Li, Shuo Shi","doi":"10.1080/23802359.2025.2482253","DOIUrl":"10.1080/23802359.2025.2482253","url":null,"abstract":"<p><p>The complete chloroplast genome of <i>S. sinkiangensis</i> is 152,621 bp in length, comprising LSC (84,011 bp), SSC (18,630 bp), and IR (24,990 bp each) regions. The genome has 36.6% GC content (LSC: 34.6%, SSC: 29.4%, IR: 42.7%) and encodes 133 genes (88 protein-coding, 37 tRNA, eight rRNA). Phylogenetic analysis (ML/BI) indicate <i>S. sinkiangensis</i> is closest to <i>S. collina</i>. This study provides genomic insights and clarifies its phylogenetic position within Amaranthaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"314-319"},"PeriodicalIF":0.5,"publicationDate":"2025-03-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11934157/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143710770","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
First report of the complete mitochondrial genome of Glyptotendipes pallens (Meigen, 1804) (Diptera: Chironomidae) from Hebei Province, China.
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-22 eCollection Date: 2025-01-01 DOI: 10.1080/23802359.2025.2482275
Bingjiao Sun, Mengyu Lv, Tong Wu, Shuyi Li, Xiaolong Lin
{"title":"First report of the complete mitochondrial genome of <i>Glyptotendipes pallens</i> (Meigen, 1804) (Diptera: Chironomidae) from Hebei Province, China.","authors":"Bingjiao Sun, Mengyu Lv, Tong Wu, Shuyi Li, Xiaolong Lin","doi":"10.1080/23802359.2025.2482275","DOIUrl":"10.1080/23802359.2025.2482275","url":null,"abstract":"<p><p><i>Glyptotendipes pallens</i> (Meigen, 1804) serves as a significant bioindicator for monitoring freshwater ecosystems. Despite the performance of COI barcode analyses on <i>G. pallens</i>, the mitogenome of this taxon remains unassembled and unanalyzed. In this study, we provide one newly sequenced complete mitogenome of <i>G. pallens</i> for the first time. The mitogenome is 16,063 bp long with high A + T content, and consists of 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and a noncoding control region. The phylogenetic analysis strongly supports <i>G. pallens</i> and <i>G. tokunagai</i> as sister species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"309-313"},"PeriodicalIF":0.5,"publicationDate":"2025-03-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11934164/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143710728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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