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The complete chloroplast genome of Dryas octopetala var. asiatica (Dryadoideae, Rosaceae) and phylogenetic analysis. Dryas octopetala var. asiatica（Dryadoideae，蔷薇科）的完整叶绿体基因组及系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-09-04 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2399928
Li-Zhen Ling, Yong-Gang Zhang, Li-Min Yang, Shu-Dong Zhang
{"title":"The complete chloroplast genome of <i>Dryas octopetala</i> var. <i>asiatica</i> (Dryadoideae, Rosaceae) and phylogenetic analysis.","authors":"Li-Zhen Ling, Yong-Gang Zhang, Li-Min Yang, Shu-Dong Zhang","doi":"10.1080/23802359.2024.2399928","DOIUrl":"10.1080/23802359.2024.2399928","url":null,"abstract":"<p><p><i>Dryas octopetala</i> L. var. <i>asiatica</i> (Nakai) Nakai 1918 is a dwarf shrub that mainly grow in alpine and arctic zones of the Northern Hemisphere, representing an endemic variety in Asia. In the present study, the complete chloroplast (cp) genome of <i>D. octopetala</i> var. <i>asiatica</i> was first characterized and used for its phylogenetic analysis. The cp genome span 158,271 bp with an overall GC content of 36.5%. A total of 129 genes were identified, including 84 protein-coding genes (PCGs), 37 tRNA genes, and 8 rRNA genes. In addition, repetitive sequences and microsatellites were detected within this species. Phylogenetic analysis involving 39 cp genomes from Rosaceae family indicated that <i>D. octopetala</i> var. <i>asiatica</i> was sister to the clade of Amygdaloideae. This study contributes fundamental insights into the cp genome of <i>Dryas octopetala</i> var. <i>asiatica</i>, which will have expanded its use in photosynthesis and evolutionary study.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11378668/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Triplophysa grahami Regan 1906 (Cypriniformes: Nemacheilidae) and phylogenetic analysis. Triplophysa grahami Regan 1906（鲤形目：Nemacheilidae）的完整线粒体基因组及系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-09-04 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2399926
Mei Xu, Jian Zhang, Jianyu Song, Zifang Zhang, Junjie Wu
{"title":"The complete mitochondrial genome of <i>Triplophysa grahami</i> Regan 1906 (Cypriniformes: Nemacheilidae) and phylogenetic analysis.","authors":"Mei Xu, Jian Zhang, Jianyu Song, Zifang Zhang, Junjie Wu","doi":"10.1080/23802359.2024.2399926","DOIUrl":"10.1080/23802359.2024.2399926","url":null,"abstract":"<p><p><i>Triplophysa grahami</i> Regan 1906 is a member of the family Nemacheilidae, Cypriniformes, and native loach in Yunnan. In this study, the complete mitochondrial genome (mitogenome) of <i>T. grahami</i> Regan 1906 was firstly reported and analyzed. The mitogenome of <i>T. grahami</i> Regan 1906 is 16,566 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs), and one control region (D-loop). The arrangement and orientation of protein coding genes and RNAs in <i>T. grahami</i> Regan 1906 are identical to other species of Nemacheilidae. The base composition of <i>T. grahami</i> Regan 1906 mitogenome was 29.25% A, 28.55% T, 25.03% C, and 17.17% G. The phylogenetic analysis based on the mitogenome showed that <i>T. grahami</i> Regan 1906 belongs to the clade of genus <i>Triplophysa</i> and the monophyly of <i>Triplophysa</i> is identified. This study contributed valuable genetic data for <i>T. grahami</i> Regan 1906 and explored the phylogenetic relationships in Nemacheilidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11378653/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Chlaenius bimaculatus Dejean, 1826 (Coleoptera: Carabidea) and its phylogenetic analyses. Chlaenius bimaculatus Dejean, 1826 (Coleoptera: Carabidea) 的完整线粒体基因组及其系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-09-04 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2397993
Jun Li, Bowei Zhou, Ying Chen, Wenlong Jiao, Qilian Zheng, Yinghua Tong
{"title":"The complete mitochondrial genome of <i>Chlaenius bimaculatus</i> Dejean, 1826 (Coleoptera: Carabidea) and its phylogenetic analyses.","authors":"Jun Li, Bowei Zhou, Ying Chen, Wenlong Jiao, Qilian Zheng, Yinghua Tong","doi":"10.1080/23802359.2024.2397993","DOIUrl":"10.1080/23802359.2024.2397993","url":null,"abstract":"<p><p><i>Chlaenius bimaculatus</i> Dejean, 1826 (Coleoptera: Carabidea) is a predator of several lepidopteran pests, including <i>Spodoptera frugiperda</i>, <i>S. litura</i> and <i>Helcystogramma triannulella</i>. However, there has been little research into using <i>C. bimaculatus</i> to control crop pests. In this study, we sequenced the complete mitochondrial genome of <i>C. bimaculatus</i>. The results showed that the entire mitochondrial genome was 16,419 bp and contained 24% GC. 13 protein-coding, 22 transfer RNA, and two ribosomal RNA genes were identified. <i>C. bimaculatus</i> shares the same genetic arrangement and composition as other Coleoptera insects. In addition, phylogenetic analysis revealed that <i>C. bimaculatus</i> is closely related to <i>Diplocheila zeelandica</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11376285/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142140547","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of aglaeactis castelnaudii (bourcier & mulsant, 1848) (apodiformes: trochilidae: aglaeactis) and phylogenetic analysis. aglaeactis castelnaudii (bourcier & mulsant, 1848) (apodiformes: trochilidae: aglaeactis) 的完整线粒体基因组及系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-09-04 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2397980
Guangshuai Liu, Jincheng Liu, Xinyue Zhang, Xiaodong Gao
{"title":"The complete mitochondrial genome of <i>aglaeactis castelnaudii</i> (bourcier & mulsant, 1848) (apodiformes: trochilidae: <i>aglaeactis</i>) and phylogenetic analysis.","authors":"Guangshuai Liu, Jincheng Liu, Xinyue Zhang, Xiaodong Gao","doi":"10.1080/23802359.2024.2397980","DOIUrl":"10.1080/23802359.2024.2397980","url":null,"abstract":"<p><p>In this study, we employed high-throughput sequencing data to assemble the mitochondrial genome (mitogenome) of the White-tufted Sunbeam (<i>Aglaeactis castelnaudii</i>). The total length of the mitogenome was found to be 16,872 base pairs (bp), containing 13 protein-coding genes (PCGs), 22 transfer RNA genes, 2 ribosomal RNA genes, and 1 control region. The nucleotide composition was as follows: A 30.6%, T 24.0%, C 31.2%, and G 14.2%, resulting in a GC content of 45.4%. Phylogenetic analysis, utilizing the concatenation of the 13 mitochondrial PCGs, indicated a closer evolutionary relationship between the genus <i>Aglaeactis</i> and the genus <i>Coeligena</i> compared to other genera within the family Trochilidae investigated in this study. The mitogenome of <i>A. castelnaudii</i> not only contributes to species identification but also provides valuable insights for phylogenetic and conservation genetic analyses of <i>A. castelnaudii</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11376301/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142140546","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High-throughput sequencing yields the complete plastid genome of the endemic species Phragmipedium kovachii (Orchidaceae) from northeastern Peru. 高通量测序获得了秘鲁东北部特有物种Phragmipedium kovachii（兰科）的完整质体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-09-02 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2397979
Jois V Carrion, Jhordy Perez, Daniel Tineo, Martha S Calderon, Ligia Garcia, Manuel Oliva, Oscar Gamarra Torres, Danilo E Bustamante
{"title":"High-throughput sequencing yields the complete plastid genome of the endemic species <i>Phragmipedium kovachii</i> (Orchidaceae) from northeastern Peru.","authors":"Jois V Carrion, Jhordy Perez, Daniel Tineo, Martha S Calderon, Ligia Garcia, Manuel Oliva, Oscar Gamarra Torres, Danilo E Bustamante","doi":"10.1080/23802359.2024.2397979","DOIUrl":"10.1080/23802359.2024.2397979","url":null,"abstract":"<p><p><i>Phragmipedium kovachii</i> is a species of orchid endemic to the Amazonas and San Martín regions. Unfortunately, its excessive extraction has made it a critically endangered species. In this study, we performed next-generation sequencing of <i>P. kovachii</i> (GenBank accession number OR348669) and assembled its complete chloroplast genome. The complete chloroplast genome of <i>P. kovachii</i> is A + T-rich (64.3%), measuring 152,918 bp in length. This plastid genome contains a total of 124 genes (77 protein-coding genes, 39 tRNAs, and eight rRNAs) and five pseudogenes, including a pair of inverted repeats (IRs) 25,116 bp in size and separated by a large single-copy (LSC) region of 89,216 bp and a small single-copy (SSC) region of 13,470 bp. This genome has a typical quadripartite organization following the structure of other Orchidaceae plastomes. Phylogenetic analyses revealed the close relationship between <i>P. kovachii</i> and <i>P. besseae.</i> This study contributes to the understanding of the phylogenetic relationships of the monophyletic group Cypripedioideae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11378673/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142154550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of an Antarctic moss, Ptychostomum pseudotriquetrum (Hedw.) J.R.Spence & H.P.Ramsay (Bryaceae), and phylogenetic analysis. 南极苔藓 Ptychostomum pseudotriquetrum (Hedw.) J.R.Spence & H.P.Ramsay (Bryaceae) 的完整叶绿体基因组及系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-09-01 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2384580
Sang Ho Lee
{"title":"The complete chloroplast genome of an Antarctic moss, <i>Ptychostomum pseudotriquetrum</i> (Hedw.) J.R.Spence & H.P.Ramsay (Bryaceae), and phylogenetic analysis.","authors":"Sang Ho Lee","doi":"10.1080/23802359.2024.2384580","DOIUrl":"10.1080/23802359.2024.2384580","url":null,"abstract":"<p><p><i>Ptychostomum pseudotriquetrum</i> (Hedw.) J.R.Spence & H.P.Ramsay (Bryaceae) is a bipolar and one of the most widespread species within Antarctica, exhibiting a ubiquitous presence along the Antarctic Peninsula. This study analyzed its chloroplast genome, which is 123,172 bp in length, and consists of 82 protein-coding genes, four ribosomal RNA genes, and 31 transfer RNA genes. A phylogenetic tree, constructed using 58 conserved orthologous protein-coding genes from 19 complete chloroplast genomes of the class Bryopsida, confirmed that <i>P. pseudotriquetrum</i> belongs to clade Bryaceae. Within this clade, <i>P. pseudotriquetrum</i> diverged from the clade containing <i>Anomobryum gemmigerum</i> and <i>Bryum argenteum</i>. This study contributes to enriching chloroplast genome resources for the family Bryaceae and the genus <i>Ptychostomum</i>. Such advancement could facilitate future genetic investigations aimed at conserving and exploiting Antarctic bryophytes.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370667/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142135086","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome sequence of red raspberry (Rubus idaeus L.) and phylogenetic analysis. 红树莓（Rubus idaeus L.）完整叶绿体基因组序列及系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-30 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2397986
Hao Zhou, Huajie Zhang
{"title":"The complete chloroplast genome sequence of red raspberry (<i>Rubus idaeus</i> L.) and phylogenetic analysis.","authors":"Hao Zhou, Huajie Zhang","doi":"10.1080/23802359.2024.2397986","DOIUrl":"10.1080/23802359.2024.2397986","url":null,"abstract":"<p><p>Red raspberries, <i>Rubus idaeus</i> L. 1753 are famous fruits which possess high value bioactive compounds. In this study, we report the complete chloroplast genome of <i>R. idaeus</i>, it displayed a typical quadripartite structure with 155687 bp in length. The genome encodes 127 genes including 79 protein coding genes, 8 rRNA genes and 40 tRNA genes, the overall GC content is 37.2%. Phylogenetic analysis revealed a close relationship between <i>R. idaeus</i> and <i>R. sachalinensis</i> in Section Malaehobatus.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370666/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142135087","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of Pachylophus rufescens (de Meijere, 1904) (Diptera:Chloropidae). Pachylophus rufescens (de Meijere, 1904) (Diptera:Chloropidae) 的完整线粒体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-30 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2397985
Jiuzhou Liu, Xiaodong Cai, Xiaoyan Liu, Ding Yang
{"title":"The complete mitochondrial genome of <i>Pachylophus rufescen</i>s (de Meijere, 1904) (Diptera:Chloropidae).","authors":"Jiuzhou Liu, Xiaodong Cai, Xiaoyan Liu, Ding Yang","doi":"10.1080/23802359.2024.2397985","DOIUrl":"10.1080/23802359.2024.2397985","url":null,"abstract":"<p><p><i>Pachylophus</i> belongs to the subfamily Chloropinae, the second most diverse subfamily of Chloropidae. However, there have been few complete mitochondrial genomes of Chloropinae reported in the public database. Consequently, we sequenced and annotated the complete mitochondrial genome of <i>Pachylophus rufescens</i> (de Meijere, 1904). The whole mitochondrial genome is 17, 926 bp in length, consisting of 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs) and two ribosomal RNAs (rRNAs). The mitochondrial genome exhibits high A + T bias, accounting for 79.7% of its entirety. All PCGs start with ATN codon and end with TAN or incomplete stop codon TA or single T. The Maximum likelihood phylogenetic tree revealed a close relationship between <i>Pachylophus</i> and <i>Cetema</i>. This study contributes to the expansion of the mitochondrial genome library of Chloropinae, providing a valuable resource for gaining insights into the evolutionary history of Chloropidae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370664/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142133189","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete chloroplast genome of endangered species Dipterocarpus retusus Blume (Dipterocarpaceae) and its phylogenetic implications. 濒危物种Dipterocarpus retus Blume（Dipterocarpaceae）的完整叶绿体基因组及其系统发育意义。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-30 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2387257
Yu-Tian Tao, Meng Yuan, Qin-Qin Li, Zhong-Shuai Sun
{"title":"Complete chloroplast genome of endangered species <i>Dipterocarpus retusus</i> Blume (Dipterocarpaceae) and its phylogenetic implications.","authors":"Yu-Tian Tao, Meng Yuan, Qin-Qin Li, Zhong-Shuai Sun","doi":"10.1080/23802359.2024.2387257","DOIUrl":"10.1080/23802359.2024.2387257","url":null,"abstract":"<p><p><i>Dipterocarpus retusus</i> Blume is an endangered species on the IUCN Red List. In this study, we reported the complete chloroplast (cp) genome of <i>D. retusus</i> (GenBank accession number: OP271853). The cp genome was 154,303 bp long, with a large single-copy (LSC) region of 85,586 bp and a small single-copy (SSC) region of 20,273 bp separated by a pair of inverted repeats (IRs) of 24,222 bp. It encodes 128 genes, including 84 protein-coding genes, 36 tRNA genes, and eight ribosomal RNA genes. We also reconstructed the cp genome phylogeny of <i>Dipterocarpus</i>, which indicated <i>D. retusus</i> was closely related with the sympatric species <i>D. gracilis</i>. This study may contribute valuable information to the phylogenetic relationships within the genus <i>Dipterocarpus</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370694/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142133188","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete plastome of Saxifraga giraldiana Engler and its phylogenetic analysis. Saxifraga giraldiana Engler 的完整质体及其系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-30 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2397983
Xin Liang, Luxuan Yang, Xiaoting Xu, Xiulian Chi
{"title":"The complete plastome of <i>Saxifraga giraldiana</i> Engler and its phylogenetic analysis.","authors":"Xin Liang, Luxuan Yang, Xiaoting Xu, Xiulian Chi","doi":"10.1080/23802359.2024.2397983","DOIUrl":"10.1080/23802359.2024.2397983","url":null,"abstract":"<p><p><i>Saxifraga giraldiana</i> Engler is a common subalpine and alpine plant belonging to Saxifragaceae. However, the genetic diversity of this species has remained to be explored. In this study, we have assembled and characterized the complete chloroplast genome of <i>S. giraldiana</i>, filling this knowledge gap and uncovering its genetic composition. The chloroplast genome is 147,267 bp long and contains 131 genes, including 85 protein-coding genes, 38 tRNA genes, and eight rRNA genes. Furthermore, we have performed a phylogenetic analysis of 19 representative species within <i>Saxifraga</i>. As a result, we have found that <i>S. giraldiana</i>, together with <i>S. implicans</i> and <i>S. stellariifolia</i>, forms a monophyletic group. These findings have implications for the conservation and utilization of <i>S. giraldiana</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11370695/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142133190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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