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Characteristics and phylogenetic analysis of the complete chloroplast genome of Vernonia volkameriifolia DC. 1836 (Asteraceae). Vernonia volkameriifolia DC. 1836（菊科）完整叶绿体基因组的特征和系统发育分析。1836（菊科）。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-27 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2390622
Li Yong, Ze Liu, Haimei Chen, Bin Wang
{"title":"Characteristics and phylogenetic analysis of the complete chloroplast genome of <i>Vernonia volkameriifolia</i> DC. 1836 (Asteraceae).","authors":"Li Yong, Ze Liu, Haimei Chen, Bin Wang","doi":"10.1080/23802359.2024.2390622","DOIUrl":"https://doi.org/10.1080/23802359.2024.2390622","url":null,"abstract":"<p><p><i>Vernonia volkameriifolia DC. 1836</i>, is a woody shrub of the subfamily <i>Vernonioideae</i> within the family Asteraceae. The complete chloroplast genome of <i>V. volkameriifolia</i> spans 152,934 bp, comprising four subregions: a large single-copy region (84,035 bp), a small single-copy region (18,543 bp), and a pair of inverted repeats (25,178 bp). Within the chloroplast genome of <i>V. volkameriifolia</i>, 114 unique genes were identified, including 80 unique protein-encoding genes, four ribosomal RNA (rRNA) genes, and 30 transfer RNA (tRNA) genes. Phylogenetic analysis based on the complete chloroplast genome of six related taxa in the Vernonieae tribe indicates that <i>V. volkameriifolia</i> show closer relationships with <i>Vernonia parishii</i> and <i>Strobocalyx arborea</i>. The first chloroplast genome of <i>V. volkameriifolia</i> was reported in this work, contributing to the enrichment of genomic data for the genus <i>Vernonia</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11351363/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142109396","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete chloroplast genome sequence and phylogenetic analysis of Populus maximowiczii Henry 1913 (Salicaceae Mirb.). 杨树 maximowiczii Henry 1913（莎草科 Mirb.）的完整叶绿体基因组序列和系统发育分析。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-22 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392759
Yan Zhang, Hongyun Shang, Wei Liu, Xiaoliang Shan, Nairui Wang, Rusheng Peng
{"title":"Complete chloroplast genome sequence and phylogenetic analysis of <i>Populus maximowiczii</i> Henry 1913 (Salicaceae Mirb.).","authors":"Yan Zhang, Hongyun Shang, Wei Liu, Xiaoliang Shan, Nairui Wang, Rusheng Peng","doi":"10.1080/23802359.2024.2392759","DOIUrl":"10.1080/23802359.2024.2392759","url":null,"abstract":"<p><p>The classification and identification of species in <i>Populus</i> has remained a formidable challenge due to widespread interspecies hybridization. The complete chloroplast genome of <i>Populus maximowiczii</i> was obtained by Illumina high-throughput sequencing technology, with a typical quadripartite structure and 37.0% GC content. The chloroplast genome of <i>P. maximowiczii</i> was 156,892 in length, including a large single-copy region (LSC: 84,988 bp), a small single-copy region (SSC: 16,630 bp), and a pair of inverted repeats (IRs: each 27,637 bp in length). A total of 131 genes were annotated, including 86 protein-coding genes, 37 tRNAs, and 8 rRNAs. The phylogenetic analysis indicated that 43 species belonging to <i>Populus</i> were classified into monophyly, with <i>P. cathayana</i> being the closest relatives to <i>P. maximowiczii</i>. In conclusion, this study provides valuable insights into understanding the phylogeny of <i>Populus</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11342814/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142056036","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete plastome sequence of Narcissus pseudonarcissus L., one of the most iconic European plants. 欧洲最具代表性的植物之一水仙的完整质体序列。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-22 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392758
Martino Adamo, Valeria Fochi, Marco Mucciarelli
{"title":"Complete plastome sequence of <i>Narcissus pseudonarcissus</i> L., one of the most iconic European plants.","authors":"Martino Adamo, Valeria Fochi, Marco Mucciarelli","doi":"10.1080/23802359.2024.2392758","DOIUrl":"10.1080/23802359.2024.2392758","url":null,"abstract":"<p><p><i>Narcissus pseudonarcissus</i> L. is one of the most iconic plants of the European flora. It is a species of great horticultural interest, but also an endangered and protected plant in the wild as a consequence of loss of natural habitats. Complete plastid genome was assembled from next-generation sequencing data obtaining a circular genome of 160,008 bp long assembly. It comprises a pair of inverted repeat regions, a large single-copy region (108,400 bp), and a small single-copy region (16,434 bp). It encodes 131 genes, including 87 protein coding genes, 37 tRNA genes and seven rRNA genes. Phylogeny showed the strict relationship between <i>N. pseudonarcissus</i> and <i>Narcissus poeticus</i> L. The complete plastome will provide a useful genetic resource for future conservation programmes, phylogenetic studies and horticultural applications.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11342812/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142056037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Camellia flava (Pitard) Sealy, a golden camellia of Vietnam. 越南金茶花 Camellia flava (Pitard) Sealy 的完整叶绿体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-21 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392741
Yunxia Tang, Xingwen Zhou, Mengyao Zhu, BingBing He, Changjie Jiang, Guochang Ding
{"title":"The complete chloroplast genome of <i>Camellia flava</i> (Pitard) Sealy, a golden camellia of Vietnam.","authors":"Yunxia Tang, Xingwen Zhou, Mengyao Zhu, BingBing He, Changjie Jiang, Guochang Ding","doi":"10.1080/23802359.2024.2392741","DOIUrl":"10.1080/23802359.2024.2392741","url":null,"abstract":"<p><p><i>Camellia flava</i> (Pit.) Sealy 1949 is a rare and precious species with golden flowers, which hold important ornamental and breeding values. In this study, the complete chloroplast genome of <i>C. flava</i> is reported for the first time. The chloroplast genome exhibits a typical quadripartite structure with a total length of 156,670 bp and a GC content of 37.32%, including a large single-copy region (86,250 bp), a small single-copy region (18,292 bp), and a pair of inverted repeat regions (26,064 bp). A total of 133 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes were annotated. The phylogenetic analysis revealed a close relationship between <i>C. flava</i> and <i>C. tamdaoensis</i>. The chloroplast genome sequence of <i>C. flava</i> serves as a valuable resource for further breeding research and genetic phylogenetic studies.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11340231/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142036306","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete plastome of Thalictrum elegans Wall. ex Royle and its phylogenetic analysis. Thalictrum elegans Wall.
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-20 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392756
Ruijing Cheng, Xiaoting Xu, Xiulian Chi
{"title":"The complete plastome of <i>Thalictrum elegans</i> Wall. ex Royle and its phylogenetic analysis.","authors":"Ruijing Cheng, Xiaoting Xu, Xiulian Chi","doi":"10.1080/23802359.2024.2392756","DOIUrl":"10.1080/23802359.2024.2392756","url":null,"abstract":"<p><p><i>Thalictrum elegans</i> Wall. ex Royle, a species within the family Ranunculaceae, is mainly distributed along forest margins and grassy slopes at altitudes 2700-4000 m on the Qinghai-Tibetan Plateau. Despite its wide distribution in alpine ecosystems, its genetic diversity remains poorly understood. In this study, we assembled and characterized the complete chloroplast genome of <i>T. elegans</i>, addressing a significant gap in our understanding of its genetic composition. The chloroplast genome is 155,864 base pairs long and contains 131 genes, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis of 15 representative <i>Thalictrum</i> species revealed that the genus can be classified into three clades. <i>T. elegans</i> along with another nine other species formed the largest monophyletic clade and is most closely related to <i>T. petaloideum</i> and <i>T. foliosum</i>. These findings enhance our understanding of the genetic diversity of <i>T. elegans</i> and contribute to its conservation and utilization.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11340211/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142036307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Semiaquilegia danxiashanensis (Ranunculaceae), a rare species endemic to Danxia landform in Guangdong, China. 中国广东丹霞地貌特有的稀有物种--丹霞鼠尾草（Ranunculaceae）的完整叶绿体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-20 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392746
Xin-Mei Qin, Xiao-Yuan Mo, Zheng-Juan Zhu, Yuan Yuan, Hao-Yang Jiang, Hong Li
{"title":"The complete chloroplast genome of <i>Semiaquilegia danxiashanensis</i> (Ranunculaceae), a rare species endemic to Danxia landform in Guangdong, China.","authors":"Xin-Mei Qin, Xiao-Yuan Mo, Zheng-Juan Zhu, Yuan Yuan, Hao-Yang Jiang, Hong Li","doi":"10.1080/23802359.2024.2392746","DOIUrl":"10.1080/23802359.2024.2392746","url":null,"abstract":"<p><p><i>Semiaquilegia danxiashanensis</i> is currently known only from the type locality, Danxia Mountain, characterized by its spectacular red sandstone cliffscape. In this study, we assembled the complete chloroplast genome sequence of <i>S. danxiashanensis</i> and inferred its phylogenetic relationships. Total length of the chloroplast genome was 160,548 bp, with an overall GC content of 39%. The chloroplast genome had typical quadripartite structure and contained one LSC region (89,882 bp) and one SSC region (17,386 bp), which were separated by two IRs regions (26,640 bp, respectively). It comprised 133 genes, including 84 protein coding genes, 41 tRNA genes and eight rRNA genes. The maximum likelihood phylogenetic analysis indicated that <i>S. danxiashanensis</i> was sister to <i>S. adoxoides</i>; meanwhile, <i>Semiaquilegia</i> was closely related to both <i>Urophysa</i> and <i>Aquilegia</i> in Ranunculaceae. This study sheds light on the evolutionary history of <i>Semiaquilegia</i> and provides preliminary data for future comparative analysis of chloroplast genomes.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11338201/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142017975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Complete mitochondrial genome of Colias sifanica Grum-Grshimailo, 1891 (Lepidoptera: Pieridae) from montane region in northwestern China. 中国西北高山地区 Colias sifanica Grum-Grshimailo, 1891（鳞翅目：墩科）的完整线粒体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392760
Ying Wang, Zeyu Hu, Liufang Wei, Fengying Wan, Fanyu Wei, Jiasheng Hao, Chengyong Su
{"title":"Complete mitochondrial genome of <i>Colias sifanica</i> Grum-Grshimailo, 1891 (Lepidoptera: Pieridae) from montane region in northwestern China.","authors":"Ying Wang, Zeyu Hu, Liufang Wei, Fengying Wan, Fanyu Wei, Jiasheng Hao, Chengyong Su","doi":"10.1080/23802359.2024.2392760","DOIUrl":"10.1080/23802359.2024.2392760","url":null,"abstract":"<p><p><i>Colias sifanica</i> Grum-Grshimailo, 1891, is a typical montane butterfly species which occurs on the Qinghai-Tibet Plateau (QTP) and adjacent regions in China. In this study, the complete mitochondrial genome of this species was assembled from data generated by next-generation sequencing. The mitogenome was 15,151 bp in length and comprised 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes and a control region. The base composition of the <i>C. sifanica</i> mitogenome was 39.7% A, 41.3% T, 11.3% C and 7.7% G, significantly AT biased as commonly found in other Pieridae mitogenomes. Phylogenetic analyses based on all PCGs using both the maximum likelihood and Bayesian inference methods indicated that <i>C. sifanica</i> is closely related to <i>C. fieldii</i> with high support values, and the phylogenetic relationship of (<i>Dercas</i> + ((<i>Gandaca</i> + <i>Gonepteryx</i>) + (<i>Phoebis</i> + (<i>Anteos</i> + (<i>Catopsilia</i> + (<i>Zerene</i> + <i>Colias</i>))))))) was shown for the tribe Coliadini. Though both the mitogenomic gene order and overall base composition were found to be conserved, different Ka/Ks ratios for several mitogenomic PCGs were detected between <i>Colias</i> and other species in the tribe Coliadini.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11334738/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142009070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete chloroplast genome of Pyankovia brachiata (amaranthaceae), an annual desert plant in China. 中国一年生沙漠植物 Pyankovia brachiata（苋科）的完整叶绿体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2393469
Huafeng Liu, Kaiqing Xie, Donglai Hua
{"title":"The complete chloroplast genome of <i>Pyankovia brachiata</i> (amaranthaceae), an annual desert plant in China.","authors":"Huafeng Liu, Kaiqing Xie, Donglai Hua","doi":"10.1080/23802359.2024.2393469","DOIUrl":"10.1080/23802359.2024.2393469","url":null,"abstract":"<p><p><i>Pyankovia brachiata</i> (Pall.) Akhani & Roalson 2007, is an annual plant belonging to the genus <i>Pyankovia</i>, family Amaranthaceae, which is widely distributed in the inland deserts of Northwest China. <i>P. brachiata</i> was previously categorized under the genus <i>Salsola</i> in Salsoleae and has been a long-standing topic of debate. Therefore, the complete chloroplast genome of <i>P. brachiata</i> must be studied to provide a theoretical reference for species classification. In this study, we sequenced <i>P. brachiata</i> samples and determined the species' complete chloroplast genome. The complete chloroplast genome was 149,922 bp in length, with one large single copy (LSC: 83,565 bp), one small single copy (SSC: 18,535 bp), and two inverted repeat regions (IRa and IRb, 23,911 bp each). It contains 132 genes, including 87 protein-coding, eight rRNA, and 37 tRNA genes. The phylogenetic position showed that <i>P. brachiata</i> has the closest relationship with <i>Caroxylon passerinum</i> (accession number: NC057191.1). This study will provide genetic information and be beneficial to understanding the systematic position of <i>P. brachiata</i> within the Amaranthaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11334741/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142009072","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Two complete mitochondrial genomes of Boulenophrys (Anura: Megophryidae: Megophryinae): characteristics and phylogenetic implications. Boulenophrys (Anura: Megophryidae: Megophryinae) 的两个完整线粒体基因组：特征和系统发育意义。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392745
Zi-Ying Wang, Yu Wang, Hua-Li Hu, Li Ma, Ke He, Guo-Hua Ding
{"title":"Two complete mitochondrial genomes of <i>Boulenophrys</i> (Anura: Megophryidae: Megophryinae): characteristics and phylogenetic implications.","authors":"Zi-Ying Wang, Yu Wang, Hua-Li Hu, Li Ma, Ke He, Guo-Hua Ding","doi":"10.1080/23802359.2024.2392745","DOIUrl":"10.1080/23802359.2024.2392745","url":null,"abstract":"<p><p>The Chinese horned toads, <i>Boulenophrys boettgeri</i> (Boulenger, 1899) and <i>Boulenophrys kuatunensis</i> (Pope, 1929), are two captivating species within the family Megophryidae, which inhabit the mountainous streams in the Eastern of China. In this study, two new complete mitochondrial genomes of <i>B. boettgeri</i> and <i>B. kuatunensis</i> were sequenced, assembled, and annotated using next-generation sequencing. The length of mitochondrial genomes of <i>B. boettgeri</i> and <i>B. kuatunensis</i> was 16,597 and 17,921 bp, respectively, with both containing 13 protein coding genes, 22 tRNA genes, two rRNA genes, and one putative control region. Phylogenetic relationships based on protein-coding mitochondrial genes showed that the two <i>Boulenophrys</i> species formed a cluster with other <i>Boulenophrys</i> species. The two new sequences provide valuable insights into the mitochondrial genomes of these two species, offering important data for understanding the phylogenetic relationships of the genus <i>Boulenophrys</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11334740/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142009074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete mitochondrial genome of the blackskin catfish (Clarias meladerma: Clariidae) from Rokan River, Riau, Indonesia. 印度尼西亚廖内省罗干河黑皮鲶（Clarias meladerma: Clariidae）的完整线粒体基因组。
IF 0.5 4区 生物学
Mitochondrial DNA. Part B, Resources Pub Date : 2024-08-19 eCollection Date: 2024-01-01 DOI: 10.1080/23802359.2024.2392742
Huria Marnis, Khairul Syahputra, Bambang Iswanto, Imam Civi Cartealy, Sularto, Jadmiko Darmawan, Erma Primanita Hayuningtyas, Rahmat Hidayat, Arsad Tirta Subangkit, Arianto
{"title":"The complete mitochondrial genome of the blackskin catfish (<i>Clarias meladerma</i>: Clariidae) from Rokan River, Riau, Indonesia.","authors":"Huria Marnis, Khairul Syahputra, Bambang Iswanto, Imam Civi Cartealy, Sularto, Jadmiko Darmawan, Erma Primanita Hayuningtyas, Rahmat Hidayat, Arsad Tirta Subangkit, Arianto","doi":"10.1080/23802359.2024.2392742","DOIUrl":"10.1080/23802359.2024.2392742","url":null,"abstract":"<p><p><i>Clarias meladerma</i> Bleeker, 1846, a native catfish species in Indonesia belonging to the family Clariidae. The present study the complete mitochondrial genome sequence of <i>C. meladerma</i> from the Rokan River was sequenced by using next-generation sequencing, and its phylogenetic relationship was analyzed. The mitochondrial genome comprises 13 protein-coding genes (PCGs), 22 tRNA genes, and two rRNA genes, with a total length of 16,808 bp. The mitogenome of <i>C. meladerma</i> exhibits a base composition of 32.49% adenine, 25.75% thymine, 14.51% guanine, and 27.25% cytosine. Phylogenetic analysis indicated that <i>C. meladerma</i> has the same clade with <i>C. macrocephalus, C. batrachus</i>, and <i>C. fucus</i>. In essence, the findings of this study lay down a genetic foundation for future investigations into <i>C. meladerma</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":null,"pages":null},"PeriodicalIF":0.5,"publicationDate":"2024-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11334743/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142009073","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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