{"title":"Complete mitochondrial genome of <i>Inimicus didactylus</i> (Pallas, 1769) and its phylogenetic analysis.","authors":"Qian Li, Hao Li, Zhaojie Peng, Wenhua Yu, Shichao Wei","doi":"10.1080/23802359.2025.2482250","DOIUrl":"10.1080/23802359.2025.2482250","url":null,"abstract":"<p><p><i>Inimicus didactylus</i> is a venomous fish belonging to the family Synanceiidae, which is closely related to the true stonefishes (Synanceiidae, <i>Synanceia spp</i>.). Here, we employed high-throughput sequencing technology to assemble and annotate the complete mitochondrial genome of <i>I. didactylus</i>. The mitochondrial genome, with a length of 16,670 base pairs, exhibits A-T bias in its base composition (58.19%) and consists of 13 protein-coding genes, 22 tRNA genes, and 2 rRNA genes. Phylogenetic analysis indicates a close relationship between <i>I. didactylus</i> and <i>I. japonicus</i>. This study provides a genomic resource that enhances ecology and evolution researches on Synanceiidae species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"304-308"},"PeriodicalIF":0.5,"publicationDate":"2025-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11934163/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143710726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jesús Antonio Rocamontes-Morales, Anahí Martínez-Cárdenas, Jorge Ortega, J Antonio Baeza
{"title":"The mitochondrial genome of the fringe-lipped frog-eating bat <i>Trachops coffini</i> and its phylogenetic position among new world leaf-nosed bats (Chiroptera: Phyllostomidae).","authors":"Jesús Antonio Rocamontes-Morales, Anahí Martínez-Cárdenas, Jorge Ortega, J Antonio Baeza","doi":"10.1080/23802359.2025.2470835","DOIUrl":"10.1080/23802359.2025.2470835","url":null,"abstract":"<p><p>The fringe-lipped frog-eating bat <i>Trachops coffini</i> inhabits tropical and semitropical rainforests from Mexico to Brazil. In this study, we sequenced and assembled the complete mitochondrial genome of <i>T. coffini</i>. The entire mitogenome is a circular molecule, 16,960 bp in total length that contains 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and one D-loop or control region (CR). The overall base composition is A = 32.43%, G = 13.43%, C = 24.26%, and T = 29.87%, with A + T content = 62.31%. A phylogenetic tree reconstructed using the 13 PCGs that included 59 taxa recovered <i>T. coffini</i> as a taxon sister to a fully-supported clade containing the genera <i>Tonatia</i>, <i>Lophostoma</i>, and <i>Phyllostomus</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"298-303"},"PeriodicalIF":0.5,"publicationDate":"2025-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11921155/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143663906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Changping Ding, Jian Shen, Shuoying Ning, Meixia Yang
{"title":"The first complete mitochondrial genome of <i>Dermestes vorax</i> (Coleoptera: Bostrichiformia: Dermestidae) from China and its phylogenetic analyses.","authors":"Changping Ding, Jian Shen, Shuoying Ning, Meixia Yang","doi":"10.1080/23802359.2025.2475820","DOIUrl":"10.1080/23802359.2025.2475820","url":null,"abstract":"<p><p><i>Dermestes vorax</i> is a significant storage pest which challenging to distinguish it from <i>Dermestes lardarius</i> by external morphological characteristics. This study presents the complete mitochondrial genome of <i>D. vorax</i>. The mitogenome of <i>D. vorax</i> spans 15,775 bp and comprises 13 protein-coding genes (PCGs), 22 tRNA genes, two rRNA genes, and an AT-rich region. The nucleotide composition includes A (41.51%), C (14.14%), G (9.03%), and T (35.32%). Phylogenetic analyses by Bayesian inference and maximum-likelihood methods suggest the relationship among three subfamilies: Dermestinae + (Attageninae + Megatominae). Additionally, phylogenetic analysis indicates that <i>D. vorax</i> is more closely rated to <i>D. lardarius</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"283-287"},"PeriodicalIF":0.5,"publicationDate":"2025-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11912290/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143649683","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of medicinally important wood-decaying fungus <i>Tyromyces fissilis</i> within the family Incrustoporiaceae, Polyporales.","authors":"Ling Zhao, Jianzhao Qi","doi":"10.1080/23802359.2025.2478128","DOIUrl":"10.1080/23802359.2025.2478128","url":null,"abstract":"<p><p><i>Tyromyces fissilis</i> (Berk. & M.A.Curtis) Donk 1933, a globally renowned white-rot basidiomycete belonging to the Polyporales order, holds significant potential for lignin degradation, yet its mitochondrial genome has received comparatively little attention. Our study concentrates on a specimen designated <i>T. fissilis</i> NEFU_01, sourced from the Forest Botanical Garden in Heilongjiang Province, China. Utilizing next-generation sequencing (NGS) technology, we have successfully delineated the complete mitochondrial genome of this <i>T. fissilis</i> isolate. The genome is composed of 15 protein-coding genes (PCGs), an array of 24 transfer RNAs (tRNAs), and a pair of ribosomal RNAs (rRNAs), encompassing a total of 163,380 base pairs (bp). Additionally, the genome encodes 28 LAGLIDADG- and 10 GIY-YIG-homing endonucleases. The nucleotide composition is characterized by adenine (A) at 37.02%, cytosine (C) at 12.91%, guanine (G) at 13.04%, and thymine (T) at 37.03%, culminating in a GC content of 25.95%. Subsequently, we undertook a phylogenetic analysis, employing a dataset of 25 mitochondrial genomes to construct a phylogenetic tree. This research represents the first comprehensive foray into understanding the phylogenetic relationships of <i>T. fissilis</i> with its Basidiomycete kin, particularly its sister-group relationship with <i>Phlebia radiata</i> Fr. (1821), thereby laying a substantive groundwork for subsequent evolutionary and taxonomic studies within this mycological cohort.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"292-297"},"PeriodicalIF":0.5,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11912252/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143649677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of <i>Crocidura rapax</i> Allen, 1923 and its phylogenetic analyses.","authors":"Zhu Liu, Lu Miao, Qiu-Ying Guo, Mei-Feng Han","doi":"10.1080/23802359.2025.2475839","DOIUrl":"10.1080/23802359.2025.2475839","url":null,"abstract":"<p><p>This study aimed to examine the complete mitogenome sequence of <i>Crocidura rapax</i> Allen, 1923 using polymerase chain reaction. The mitochondrial genome of <i>C. rapax</i> is a circular double-stranded structure with a complete length of 17,517 bp. The mitochondrial genome of <i>C. rapax</i> included 13 protein-coding genes, one control region, 22 tRNA genes, two rRNA genes, and one origin of L-strand replication. This study confirmed the phylogenetic position of <i>C. rapax</i> in the <i>Crocidura</i> genus at the molecular level. The mitochondrial genome is of significant importance for elucidating the genetic background of <i>C. rapax.</i></p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"288-291"},"PeriodicalIF":0.5,"publicationDate":"2025-03-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11905319/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143625214","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Characterization of the complete mitochondrial genome of <i>Hynobius bambusicolus</i> Wang, Othman, Qiu and Borzée, 2023 (Amphibia, Caudata, Hynobiidae) and its phylogenetic implications.","authors":"Yanpin Huang, Helin Wang, Haoran Luo, Honghui Zhong, Qingxian Lin, Xiaoping Zhou","doi":"10.1080/23802359.2025.2475845","DOIUrl":"10.1080/23802359.2025.2475845","url":null,"abstract":"<p><p><i>Hynobius bambusicolus</i> (Caudata, Hynobiidae) is a recently described species, identified in 2022, and is thus not widely known. In this study, we sequenced and annotated the complete mitogenome of <i>H. bambusicolus</i>. The resulting mitochondrial genome is 16,406 bp in length and comprises 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNA), 22 transfer RNA genes, and a non-coding region. The base composition of the mitogenome is 33.3% A, 32.1% T, 20.8% C, and 13.8% G. The phylogenetic trees indicated that <i>H. bambusicolus</i> is the basal branch within the Southern Chinese <i>Hynobius</i> clade.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"278-282"},"PeriodicalIF":0.5,"publicationDate":"2025-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11894738/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143605682","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of <i>Amolops hainanensis</i> (anura: ranidae).","authors":"Chuhan Zi, Zhengyan Zhou, Lanying Xu, Sufan Yu, Lin Ding, Ziyi Liu, Longming Fu, Feng Lin, Xiuzhong Li, Yu Zhou","doi":"10.1080/23802359.2025.2475826","DOIUrl":"10.1080/23802359.2025.2475826","url":null,"abstract":"<p><p>The complete mitochondrial genome sequence of <i>Amolops hainanensis</i> is 17778 bp in length (GenBank accession number PP734094) and contains 13 protein-coding genes, 2 rRNA genes, and 22 tRNA genes. The mitochondrial gene arrangement of <i>A. hainanensis</i> is identical to those of other <i>Amolops</i> species and has a typical neobatrachian arrangement. Mitogenomic phylogenetic analysis revealed that <i>Amolops</i> is composed of two main clades. <i>A. hainanensis</i> is a member of the western clade and split from the basalmost node of the subclade composed of the other species of the western clade of <i>Amolops</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"272-277"},"PeriodicalIF":0.5,"publicationDate":"2025-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11892061/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143597395","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete mitochondrial genome of the Forrest's rock squirrel (<i>Sciurotamias forresti</i>, Rodentia: Sciuridae) and its phylogenetic implication.","authors":"Mengru Xie, Hongwei Zhou, Yongyuan Li, Wenge Dong, Xianguo Guo, Chengfu Zhao, Wenyu Song","doi":"10.1080/23802359.2025.2468754","DOIUrl":"10.1080/23802359.2025.2468754","url":null,"abstract":"<p><p>We sequenced the whole mitochondrial genome of <i>Sciurotamias forresti</i> using Illumina, revealing a 16,534 bp circular genome with 13 protein-coding genes (PCGs), 22 tRNAs, 2 rRNAs, a D-loop, and OL. Base composition: 32.95% A, 28.63% T, 26.14% C, 12.28% G. Phylogenetic analysis of 25 Sciuridae species showed a deep split between <i>Sciurotamias forresti</i> and <i>Sciurotamias davidianus</i>, more distant than those between other genera in the subfamily Xerinae. This supports the notion that <i>Sciurotamias forresti</i> may be ranked as a genus and indicated the necessity of further studies integrating morphological comparison and divergence dating to reevaluate its taxonomic position.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 4","pages":"267-271"},"PeriodicalIF":0.5,"publicationDate":"2025-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11878156/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143567013","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome of <i>Malva cathayensis</i> M.G.Gilbert, Y.Tang & Dorr 2007 and its phylogenetic analysis.","authors":"Shuming Zhang, Kaihua Zhang, Yuting Jiao, Junfei Liu, Weihan Yuan, Liqiang Wang","doi":"10.1080/23802359.2025.2466580","DOIUrl":"10.1080/23802359.2025.2466580","url":null,"abstract":"<p><p><i>Malva cathayensis</i>, a wild medicinal and edible Malvaceae species, lacked genomic data until now. In this study, we presented its first complete chloroplast genome (158,793 bp), featuring a quadripartite structure: 87,215 bp LSC, 20,766 bp SSC, and two 25,406 bp IRs. The genome contains 129 genes (85 protein-coding, 36 tRNA, 8 rRNA) with 37.1% GC content. Phylogenetic analysis revealed two <i>Malva clades</i>, with <i>M. cathayensis</i> grouping alongside <i>M. crispa, M. verticillata</i>, and <i>M. parviflora</i>. This study provides essential molecular data for <i>Malva</i>'s evolutionary relationships and diversification, enabling future comparative genomic research in this genus.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"229-232"},"PeriodicalIF":0.5,"publicationDate":"2025-02-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11852229/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143502235","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome of <i>Tulipa uniflora</i> (Liliaceae) in Mongolia.","authors":"Shukherdorj Baasanmunkh, Nudkhuu Nyamgerel, Batlai Oyuntsetseg, Dariganga Munkhtulga, Andrey Erst, Serik Kubentayev, Gun-Aajav Bayarmaa, Jung Won Yoon, Hyeok Jae Choi","doi":"10.1080/23802359.2025.2468748","DOIUrl":"10.1080/23802359.2025.2468748","url":null,"abstract":"<p><p><i>Tulipa uniflora</i> (L.) Besser ex Baker (1874) is distributed throughout China, Mongolia, and Russia (Siberia). This study reports the complete chloroplast genome sequence of <i>T. uniflora</i> based on high-throughput sequencing. The genome has a natural quadripartite structure and is 152,254 bp long with 36.5% GC content. It has 98 unique genes, including 4 rRNA genes, 29 tRNA genes, and 75 protein-coding genes. A total of 77 single-sequence repeats were identified, mostly in intergenic spacer regions. Anticodon recognition patterns revealed 19,717 codons in the protein-coding genes. Based on the whole chloroplast genome, <i>T. uniflora</i> was separated early from <i>Tulipa</i> species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 3","pages":"257-261"},"PeriodicalIF":0.5,"publicationDate":"2025-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11849011/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143492677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}