Sang-Kyu Lee, Jinsoon Park, Hyun Soo Rho, Sang-Hwa Lee, Jong Seong Khim
{"title":"The complete mitochondrial genome of smooth spooner crab, <i>Etisus laevimanus</i> Randall, 1840 (Crustacea: Decapoda: Xanthoidea) from the East Sea, Korea.","authors":"Sang-Kyu Lee, Jinsoon Park, Hyun Soo Rho, Sang-Hwa Lee, Jong Seong Khim","doi":"10.1080/23802359.2025.2559712","DOIUrl":"10.1080/23802359.2025.2559712","url":null,"abstract":"<p><p>The mitogenome of the smooth spooner crab <i>Etisus laevimanus</i> Randall, 1840, was sequenced completely for the first time. The total <i>E. laevimanus</i> mitogenome length is 15,714 bp, containing 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNA genes, and one non-coding region. The gene order is consistent with that in other xanthoid species. The base composition is 32.9% A, 20.6% C, 11.6% G, and 34.9% T, with a G-C content of 32.1%. The phylogenetic analysis using the xanthoid mitogenome showed that the genus <i>Etisus</i> may not be monophyletic, as suggested by a few previous studies.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"963-966"},"PeriodicalIF":0.7,"publicationDate":"2025-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12444958/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145113753","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jeong-Soo Gim, Dong-Hyun Hong, Jeong-An Gim, Maurice Lineman, Gea-Jae Joo, Hyunbin Jo
{"title":"Complete mitochondrial genome of <i>Leucopsarion petersii</i> (Gobiiformes, Gobiidae) assembled from next-generation sequencing data.","authors":"Jeong-Soo Gim, Dong-Hyun Hong, Jeong-An Gim, Maurice Lineman, Gea-Jae Joo, Hyunbin Jo","doi":"10.1080/23802359.2025.2559716","DOIUrl":"10.1080/23802359.2025.2559716","url":null,"abstract":"<p><p>We report the complete mitochondrial genome of <i>Leucopsarion petersii</i> from specimens collected in Geoje City, South Korea. Using next-generation sequencing, we determined the mitochondrial genome is a circular DNA molecule of 16,525 bp, comprising 13 protein-coding genes, 22 tRNA genes, and two rRNA genes. Maximum likelihood phylogenetic analysis using 12 mitochondrial genomes showed this species clustered with other Gobiiformes, providing first insights into phylogenetic relationships within this order.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"972-975"},"PeriodicalIF":0.7,"publicationDate":"2025-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12444920/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145113814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome sequence of the <i>populus</i> cultivar \"<i>Populus × Beijingensis</i>\": a type of unique Chinese <i>populus</i>.","authors":"Yong-Hao Nan, Yu-Rong Ren, Jian-Ming Shi, Kang-Zhong Wang, Jian-Rong Wei, Ji-Gang Li","doi":"10.1080/23802359.2025.2559715","DOIUrl":"10.1080/23802359.2025.2559715","url":null,"abstract":"<p><p>This study examines the chloroplast genome of <i>Populus × beijingensis</i>, a deciduous tree species from the genus <i>Populus</i> in the <i>Salicaceae</i> family, which is highly valued for its ecological and economic significance. The sequencing result shows that the chloroplast genome of <i>P.×beijingensis</i> is approximately 157,070 base pairs (bp) in length, with the large single-copy (LSC) region being 85,192 bp and the small single-copy (SSC) region at 16,564 bp. It encodes a total of 128 genes, comprising 84 protein-coding genes, 36 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. This research establishes a foundation for future studies on the genetic diversity and ecological adaptation of <i>P.×beijingensis</i> and other <i>Populus</i> species.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"967-971"},"PeriodicalIF":0.7,"publicationDate":"2025-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12444954/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145113779","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Complete mitochondrial genome of <i>schistura yingjiangensis</i> (Zhu 1982) (cypriniformes: nemacheilidae): insights into its features and phylogenetic relationships.","authors":"Chunxiang Yang, Xiangxing Lu, Guangming Wu, Chunpeng Li, Jianyu Song, Junjie Wu","doi":"10.1080/23802359.2025.2559714","DOIUrl":"10.1080/23802359.2025.2559714","url":null,"abstract":"<p><p>This study sequenced and analyzed the complete mitochondrial genome (16,571 bp) of <i>Schistura yingjiangensis</i>, a species endemic to Yunnan, China. The genome contains 13 protein-coding genes, 22 tRNAs, and 2 rRNAs. Phylogenetic analysis revealed a close relationship between <i>S. yingjiangensis, S. polytaenia</i>, and <i>S. longa</i>. This work helps clarify the evolution of the large, paraphyletic genus <i>Schistura</i> and contributes to understanding the evolutionary dynamics of Cypriniformes.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"937-941"},"PeriodicalIF":0.7,"publicationDate":"2025-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12434845/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145075798","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Characterization and phylogenetic analysis of the complete mitochondrial genome of <i>Benthodytes gosarsi</i> Gebruk 2008 (echinodermata: holothuroidea: elasipodida) from deep-sea environments.","authors":"Wendan Mu, Changle Li, Jun Liu, Haibin Zhang","doi":"10.1080/23802359.2025.2559710","DOIUrl":"10.1080/23802359.2025.2559710","url":null,"abstract":"<p><p>Deep-sea organisms exhibit remarkable adaptations to extreme environmental conditions. It is important to elucidate the survival mechanisms of deep-sea life by exploring their genetic characteristics and origins. This study reports the complete mitochondrial genome of a deep-sea holothurian species (<i>Benthodytes gosarsi</i>). The mitochondrial genome of <i>B. gosarsi</i> is 17,133 bp in length and encodes 13 PCGs, 2 rRNAs, and 22 tRNAs. The heavy strand of <i>B. gosarsi</i> mtDNA consists of 31.62% A, 13.30% G, 37.38% T, and 17.70% C bases. Phylogenetic analysis with 18 mitogenomes from five sea cucumber orders determined the phylogenetic position of <i>B. gosarsi</i> within Holothuroidea. This study provides new insights into the genetic structure and phylogenetic relationships of <i>B. gosarsi</i>, contributing to a better understanding of deep-sea adaptation in holothurians.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"948-952"},"PeriodicalIF":0.7,"publicationDate":"2025-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12434848/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145075874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jinsiguli Bahenuer, Anwar Tumur, Muhammad Shahid Iqbal
{"title":"Characterization and phylogenetic analysis of the mitochondrial genomes of four <i>Xanthoparmelia</i> (Vain.) Hale lichen fungi.","authors":"Jinsiguli Bahenuer, Anwar Tumur, Muhammad Shahid Iqbal","doi":"10.1080/23802359.2025.2559718","DOIUrl":"10.1080/23802359.2025.2559718","url":null,"abstract":"<p><p>In this study, the complete mitochondrial genomes of four <i>Xanthoparmelia</i> species (<i>X. chlorochroa</i>, <i>X. coreana</i>, <i>X. pulvinaris</i>, and <i>X. stenophylla</i>) were sequenced, assembled and annotated. The four mitochondrial genomes are all composed of circular DNA molecules, with a total length ranging from 81,294 bp to 88,296 bp, containing 41-42 genes (14 protein-coding genes (PCGs), 2 rRNA genes, and 25-26 tRNA genes), the GC content is 30%-30.7% and the AT skew is positive. Phylogenetic analysis based on 14 PCGs and rRNA genes revealed that the four Xanthoparmelia species form a well-supported clade within Parmeliaceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"942-947"},"PeriodicalIF":0.7,"publicationDate":"2025-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12434865/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145075810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome of <i>Hiptage benghalensis</i> (L.) Kurz and its phylogenetic analysis in malpighiaceae.","authors":"Jie Li, Yongxian Chen, Zenghong Gao, Yabin Guo","doi":"10.1080/23802359.2025.2559713","DOIUrl":"10.1080/23802359.2025.2559713","url":null,"abstract":"<p><p><i>Hiptage benghalensis</i> (L.) Kurz 1874, an economically significant woody liana in the Malpighiaceae family, lacks a reported chloroplast genome, hindering its phylogenetic analysis. To address this, we sequenced and assembled the complete chloroplast genome of <i>H. benghalensis</i>, spanning 160,719 bp with an overall GC content of 36.7%, and containing 132 genes (87 protein-coding, 37 tRNA, and 8 rRNA). Phylogenetic analysis revealed that <i>H. benghalensis</i> exhibits the closest evolutionary relationship with species from the genus <i>Aspidopterys</i>. This study provides the first complete chloroplast genome for <i>H. benghalensis</i>, enhancing our understanding of its evolution and potential applications within the Malpighiaceae family.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"953-957"},"PeriodicalIF":0.7,"publicationDate":"2025-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12434843/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145075859","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tengda Luo, Yanhong Zhang, Boqiong Wu, Bo Lu, Qiang Lin
{"title":"Complete mitochondrial genome of an abyssal cusk-eel <i>Barathrites iris</i> (Ophidiiformes: Ophidiidae).","authors":"Tengda Luo, Yanhong Zhang, Boqiong Wu, Bo Lu, Qiang Lin","doi":"10.1080/23802359.2025.2555454","DOIUrl":"10.1080/23802359.2025.2555454","url":null,"abstract":"<p><p><i>Barathrites iris</i> Zugmayer, 1911 is an abyssal fish species inhabiting depths exceeding 3,000 m. We successfully sequenced and characterized the complete mitochondrial genome of <i>B. iris</i>, which represents a closed circular molecule of 16,646 bp with a GC content of 48.98%. Phylogenetic analysis of Ophidiiformes based on whole mitochondrial genome sequences demonstrated that <i>B. iris</i> forms a sister group with <i>Penopus microphthalmus</i> while supporting the polyphyly of Bythitidae as well as the paraphyletic status of Ophidioidei. As the first report of a complete mitochondrial genome for <i>B. iris</i>, this study provides valuable genomic resources for investigating deep-sea adaptation mechanisms in Ophidiiformes and contributes to our understanding of evolutionary patterns in abyssal teleost fishes.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"923-926"},"PeriodicalIF":0.7,"publicationDate":"2025-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12418789/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145040638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The mitochondrial genome of an invasive hydromedusa: <i>Cladonema digitatum</i> Fang et al., 2022 (Cnidaria: Hydrozoa).","authors":"Yuxiang Huang, Jiaxin Tian, Shuo Zheng, Ping Zheng, Jianming Chen, Konglin Zhou, Weicheng Wang","doi":"10.1080/23802359.2025.2554415","DOIUrl":"10.1080/23802359.2025.2554415","url":null,"abstract":"<p><p>This study presents the first mitochondrial genome (16,342 bp) of the invasive species <i>Cladonema digitatum</i> Fang et al., 2022, revealing a conserved Capitata-like gene arrangement, comprising 13 protein-coding genes, two rRNA genes, and two tRNA genes, along with a duplicated pseudo-<i>cox1</i> fragment. Phylogenetic analysis robustly supported <i>C. digitatum</i> and <i>Cladonema multiramosum</i> as reciprocally monophyletic mitogenome lineages, forming a robust clade sister to <i>Cladonema pacificum</i>. This topology supports the morphological dichotomy between the <i>Cladonema radiatum</i>-like lineage (filiform tentacles, gastric pouches) and <i>C. pacificum</i>-like species. These findings contribute a critical genomic resource for advancing the understanding of medusozoan phylogeny.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"932-936"},"PeriodicalIF":0.7,"publicationDate":"2025-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12418794/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145040663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Phylogenomic insights from the complete chloroplast genome of <i>Phyllostachys lithophila</i> (poaceae: bambusoideae: arundinarieae) in Taiwan.","authors":"Kuan-Ning Kung, Tsung-Po Chang, N-Lian Zu, Zi-Chao Jian, Kun-Cheng Chang","doi":"10.1080/23802359.2025.2556006","DOIUrl":"10.1080/23802359.2025.2556006","url":null,"abstract":"<p><p><i>Phyllostachys lithophila</i> Hayata 1916 is a unique bamboo species endemic to Taiwan, typically found at elevations ranging from 500 to 1,500 meters. This study provides a detailed analysis of the complete chloroplast genome of <i>P. lithophila</i> for the first time. The genome spans 139,664 base pairs (bp) and consists of a large single-copy (LSC) region of 83,192 bp, a small single-copy (SSC) region of 12,869 bp, and two inverted repeat (IR) regions, each 21,798 bp in length. The plastid genome encodes a total of 129 genes, including 83 protein-coding genes, 38 transfer RNA (tRNA) genes, and 8 ribosomal RNA (rRNA) genes. Phylogenetic analysis confirms that <i>P. lithophila</i> shares a closer phylogenetic relationship with species of <i>Phyllostachys</i> within the Arundinarieae tribe, while being phylogenetically distinct from the morphologically similar <i>P. makinoi</i>.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 10","pages":"927-931"},"PeriodicalIF":0.7,"publicationDate":"2025-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12416004/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145030200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}