The complete mitochondrial genome of medicinally important wood-decaying fungus Tyromyces fissilis within the family Incrustoporiaceae, Polyporales.

IF 0.5 4区 生物学 Q4 GENETICS & HEREDITY
Mitochondrial DNA. Part B, Resources Pub Date : 2025-03-13 eCollection Date: 2025-01-01 DOI:10.1080/23802359.2025.2478128
Ling Zhao, Jianzhao Qi
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Abstract

Tyromyces fissilis (Berk. & M.A.Curtis) Donk 1933, a globally renowned white-rot basidiomycete belonging to the Polyporales order, holds significant potential for lignin degradation, yet its mitochondrial genome has received comparatively little attention. Our study concentrates on a specimen designated T. fissilis NEFU_01, sourced from the Forest Botanical Garden in Heilongjiang Province, China. Utilizing next-generation sequencing (NGS) technology, we have successfully delineated the complete mitochondrial genome of this T. fissilis isolate. The genome is composed of 15 protein-coding genes (PCGs), an array of 24 transfer RNAs (tRNAs), and a pair of ribosomal RNAs (rRNAs), encompassing a total of 163,380 base pairs (bp). Additionally, the genome encodes 28 LAGLIDADG- and 10 GIY-YIG-homing endonucleases. The nucleotide composition is characterized by adenine (A) at 37.02%, cytosine (C) at 12.91%, guanine (G) at 13.04%, and thymine (T) at 37.03%, culminating in a GC content of 25.95%. Subsequently, we undertook a phylogenetic analysis, employing a dataset of 25 mitochondrial genomes to construct a phylogenetic tree. This research represents the first comprehensive foray into understanding the phylogenetic relationships of T. fissilis with its Basidiomycete kin, particularly its sister-group relationship with Phlebia radiata Fr. (1821), thereby laying a substantive groundwork for subsequent evolutionary and taxonomic studies within this mycological cohort.

多孔菌科(Incrustoporiaceae)中具有重要药用价值的木材腐朽真菌 Tyromyces fissilis 的完整线粒体基因组。
裂裂发霉(伯克氏)Donk 1933是一种全球知名的白腐担子菌,属于Polyporales目,具有重要的木质素降解潜力,但其线粒体基因组却相对较少受到关注。本研究以黑龙江省森林植物园的一株T. fissilis NEFU_01为研究对象。利用新一代测序(NGS)技术,我们成功地描绘了该裂丝绦虫分离物的完整线粒体基因组。基因组由15个蛋白质编码基因(PCGs)、24个转运rna (tRNAs)阵列和一对核糖体rna (RNAs)组成,共包含163380个碱基对(bp)。此外,基因组编码28个LAGLIDADG-和10个giy - yig -归巢内切酶。其核苷酸组成为腺嘌呤(A)占37.02%,胞嘧啶(C)占12.91%,鸟嘌呤(G)占13.04%,胸腺嘧啶(T)占37.03%,GC含量为25.95%。随后,我们进行了系统发育分析,利用25个线粒体基因组的数据集构建了系统发育树。该研究首次全面探索了裂丝霉与其担子菌近亲的系统发育关系,特别是其与辐射菌(Phlebia radiata Fr., 1821)的姐妹类群关系,从而为这一真菌学群体的后续进化和分类研究奠定了实质性的基础。
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来源期刊
Mitochondrial DNA. Part B, Resources
Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
1.30
自引率
20.00%
发文量
670
期刊介绍: This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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