稀有物种五味子（五味子科）叶绿体全基因组及系统发育分析。

IF 0.5 4区生物学 Q4 GENETICS & HEREDITY

Mitochondrial DNA. Part B, Resources Pub Date : 2024-12-12 eCollection Date: 2024-01-01 DOI:10.1080/23802359.2024.2437099

Huanhuan Chen, Nawaz Haider Bashir, Lei Zhu, Tong-Xing Zhao, Tao Xu, Yong Gao, Yong-Kang Sima

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引用次数: 0

摘要

五味子（Schisandra macrocarpa Lin & Shui, 2011）属于五味子科，最近被列入中国国家重点保护野生植物名录。我们利用 Illumina Nova-Seq 6000 平台对五味子叶绿体（cp）基因组进行了研究。结果表明，大戟科植物的叶绿体基因组大小为 144 288 bp，包含一个小单拷贝（SSC）区（17 862 bp）、一个大单拷贝（LSC）区（93 332 bp）和一对倒位重复（IR）区（16 547 bp）。cp 基因组的总 GC 含量为 40%。注释基因共有 128 个，包括 83 个蛋白质编码基因、8 个 rRNA 基因和 37 个 tRNA 基因。系统进化分析表明，S. macrocarpa 与 S. propinqua subsp.这项工作有助于该物种的保护和五味子科的进化分析。

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The complete chloroplast genome and phylogenetic analysis of a rare species Schisandra macrocarpa (Schisandraceae).

Schisandra macrocarpa Lin & Shui, 2011, belongs to the family Schisandraceae and was recently added to the List of National Key Protected Wild Plants in China. We report the complete chloroplast (cp) genome of S. macrocarpa using Illumina Nova-Seq 6000 platform. The results showed that the cp genome size of S. macrocarpa was 144,288 bp, which contained a small single-copy (SSC) region (17,862 bp), a large single-copy (LSC) region (93,332 bp), and a pair of inverted repeat (IR) regions (16,547 bp). The cp genome has 40% overall GC content. Annotated genes were 128 in all, including 83 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic analysis showed that S. macrocarpa was closely related to S. propinqua subsp. sinensis. This work contributes to the conservation of this species and the evolutionary analysis of Schisandraceae.

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来源期刊

Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology

CiteScore

1.30

自引率

20.00%

发文量

670

期刊介绍： This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.