Journal of plant physiology最新文献

筛选
英文 中文
Systematical accumulating and regulating evaluations of leaf functional metabolites in geographically isolated edible medicinal plants of Piper sarmentosum 地理分离药用辣椒叶功能代谢物的系统积累与调控评价
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-05-03 DOI: 10.1016/j.jplph.2025.154512
Liu Ziting , Wu Xiaoqing , Wang Kemei , Bai Yachao , Guo Aimin , Linan Huang , Liao Bin , Zhang Jun
{"title":"Systematical accumulating and regulating evaluations of leaf functional metabolites in geographically isolated edible medicinal plants of Piper sarmentosum","authors":"Liu Ziting ,&nbsp;Wu Xiaoqing ,&nbsp;Wang Kemei ,&nbsp;Bai Yachao ,&nbsp;Guo Aimin ,&nbsp;Linan Huang ,&nbsp;Liao Bin ,&nbsp;Zhang Jun","doi":"10.1016/j.jplph.2025.154512","DOIUrl":"10.1016/j.jplph.2025.154512","url":null,"abstract":"<div><div>The edible medicinal plant <em>Piper sarmentosum</em> is widely distributed in south China. This study raised a hypothesis of geographically isolated <em>P</em>. <em>sarmentosum</em> plants possessing potential site- or/and plant-dependent accumulating metabolites, expressing genes, and colonizing bacteria. Here, <em>P</em>. <em>sarmentosum</em> plants of Guangzhou City (PG, comparison group) and Hainan Island (PH, control group) were collected for assaying leaf metabolomes (LMs), leaf transcriptomes (LTs), and leaf-assembled bacterial communities (LABCs), respectively. In LMs and LTs, 930 metabolites and 82,606 unigenes were identified with 552 differently accumulated metabolites (DAMs) and 28,177 differently expressed genes (DEGs), respectively. In LABCs, cluster analysis yielded 822 PG-PH-common, 1114 PG-unique, and 203 PH-unique operational taxonomic units (OTUs). In contrast of PH-LMs, the elevated accumulations of alkaloids and lipids and the decreased accumulations of flavonoids and phenolic acids were observed in PG-LMs. Typically, the DAMs and DEGs were co-enriched in two metabolic pathways of phenylpropanoids and flavonoids, visibly displaying the related DEGs, such as chalcone synthase (<em>CHS</em>), chalcone isomerase (<em>CHI</em>) and phenylalanine amino lyase (<em>PAL</em>), with regulating the functional DAMs, such as phenylalanine, tyrosine, p-coumaric acid, and naringenin. Noticeably, these DAMs were also significantly correlated with a number of different types or/and abundances of leaf-assembled bacteria (DTAB) between PG- and PH-LABCs, such as <em>Flavobacterium</em> and <em>Pseudomonas</em>. Therefore, this study clearly elucidated the functional metabolite accumulations and the close relationships with plant mRNA expressions and bacterial colonizations in geographically isolated plants of <em>P. sarmentosum</em>, providing new insight of selectively utilizing leaf food- and medicine-associated metabolites in different habitats of edible medicinal plants.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"310 ","pages":"Article 154512"},"PeriodicalIF":4.0,"publicationDate":"2025-05-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143932248","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Drought-induced changes in antioxidant capacity, mineral content, and plant development in basal leafy cactus: comparisons between Pereskia aculeata miller and Pereskia bahiensis Gürke 干旱诱导的基生叶仙人掌抗氧化能力、矿物质含量和植株发育的变化:细叶仙人掌和巴希仙人掌的比较
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-28 DOI: 10.1016/j.jplph.2025.154503
Daniel S. Gomes , Antônio N. Andrade , Estephanni F.O. Dantas , Vanessa A. Soares , Damiana J. Araujo , Sabrina K. Santos , Adriano S. Lopes , José E.S. Ribeiro , Valquiria C.S. Ferreira , Juliane M. Henschel , Walter E. Pereira , Thiago J. Dias , Diego S. Batista
{"title":"Drought-induced changes in antioxidant capacity, mineral content, and plant development in basal leafy cactus: comparisons between Pereskia aculeata miller and Pereskia bahiensis Gürke","authors":"Daniel S. Gomes ,&nbsp;Antônio N. Andrade ,&nbsp;Estephanni F.O. Dantas ,&nbsp;Vanessa A. Soares ,&nbsp;Damiana J. Araujo ,&nbsp;Sabrina K. Santos ,&nbsp;Adriano S. Lopes ,&nbsp;José E.S. Ribeiro ,&nbsp;Valquiria C.S. Ferreira ,&nbsp;Juliane M. Henschel ,&nbsp;Walter E. Pereira ,&nbsp;Thiago J. Dias ,&nbsp;Diego S. Batista","doi":"10.1016/j.jplph.2025.154503","DOIUrl":"10.1016/j.jplph.2025.154503","url":null,"abstract":"<div><div><em>Pereskia aculeata</em> is known for its high levels of proteins, minerals, vitamins, and bioactive compounds, qualifying it as an unconventional food. In contrast, the nutritional potential of <em>P. bahiensis</em> remains much less explored. Drought and defense-related bioregulators like salicylic acid (SA) and sodium nitroprusside (SNP) can influence plant composition and antioxidant responses, but their effects on <em>Pereskia</em> species are still unclear. This study aimed to assess the growth and nutritional profiles of <em>P. aculeata</em> and <em>P. bahiensis</em> under water deficit, SA, and SNP, testing whether <em>P. bahiensis</em> also holds food potential and whether these treatments enhance antioxidant capacity. For this, plants were grown under two irrigation regimes: well-watered (80 % water retention capacity – WRC) and water deficit (15 % WRC for 8 days, followed by total water restriction for 16 days). Additionally, plants were foliar sprayed with 100 μM SA, 100 μM SNP, or water (control). <em>P. bahiensis</em> exhibited greater phenolic compounds content and antioxidant capacity, but lower biomass production, and contents of sugars and minerals compared to <em>P. aculeata</em>. Drought increased the antioxidant capacity but decreased mineral content and biomass in the two <em>species;</em> while SA and SNP only affected Mn contents, not affecting the antioxidant capacity and growth. These findings highlight the great antioxidant capacity of <em>P. bahiensis</em>, surpassing that of <em>P. aculeata</em>, which underscores its potential as a nutraceutical plant. Moreover, water deficit can be used as a strategy to improve antioxidant capacity of both species, while SA and SNP treatments have no effects in their quality.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"309 ","pages":"Article 154503"},"PeriodicalIF":4.0,"publicationDate":"2025-04-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143900088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The look insight – magnetic resonance imaging (MRI) of the inner life of plants 植物内部生命的核磁共振成像(MRI)
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-26 DOI: 10.1016/j.jplph.2025.154502
Ljudmilla Borisjuk , Thomas Neuberger
{"title":"The look insight – magnetic resonance imaging (MRI) of the inner life of plants","authors":"Ljudmilla Borisjuk ,&nbsp;Thomas Neuberger","doi":"10.1016/j.jplph.2025.154502","DOIUrl":"10.1016/j.jplph.2025.154502","url":null,"abstract":"<div><div>Magnetic resonance imaging (MRI) is one of the most versatile and widely used imaging techniques in modern medicine, but its incredible potential remains underutilized in plant science. Many aspects of the inner life of plants are still unknown and are waiting to be discovered by new innovative technological solutions. The ability of MRI to non-invasively explore processes inside living organisms offers an unparalleled opportunity to investigate metabolism, nutrient allocation, growth and development. Enabling the visualization of complex dynamics in living organisms in unprecedented ways could transform how we study and perceive plants. This article highlights the critical advancements and strategies that are paving the way for MRI to become an essential tool in plant research, unlocking new frontiers in biology and agriculture.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"309 ","pages":"Article 154502"},"PeriodicalIF":4.0,"publicationDate":"2025-04-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143900089","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Selection and validation of reference genes for quantitative real-time PCR analysis across tissues at different developmental stages in Taraxacum kok-saghyz 蒲公英不同发育阶段组织间实时荧光定量PCR内参基因的选择与验证
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-24 DOI: 10.1016/j.jplph.2025.154501
Yongmei Li , Yuan Yao , Tiancheng Xu , Xue Yang , Yuting He , Shengmin Zhang , Qingbiao Xie , Jie Cao , Chaorong Tang , Hui Liu
{"title":"Selection and validation of reference genes for quantitative real-time PCR analysis across tissues at different developmental stages in Taraxacum kok-saghyz","authors":"Yongmei Li ,&nbsp;Yuan Yao ,&nbsp;Tiancheng Xu ,&nbsp;Xue Yang ,&nbsp;Yuting He ,&nbsp;Shengmin Zhang ,&nbsp;Qingbiao Xie ,&nbsp;Jie Cao ,&nbsp;Chaorong Tang ,&nbsp;Hui Liu","doi":"10.1016/j.jplph.2025.154501","DOIUrl":"10.1016/j.jplph.2025.154501","url":null,"abstract":"<div><div>Quantitative real-time polymerase chain reaction (qRT-PCR) is a highly sensitive and widely used method for analyzing gene expression profiles. Accurate qRT-PCR normalization requires the identification of stable reference genes under specific experimental conditions. Although seven reference genes have been used in <em>Taraxacum kok-saghyz</em> (TKS), an alternative natural rubber-producing crop, a systematic identification of reliable internal references for gene expression analysis across tissues at distinct developmental stages of TKS has not been conducted. In this study, we screened 12 candidate reference genes (CRGs) based on RNA-seq data from 26 TKS samples, representing five tissue types and nine developmental stages. The expression levels of the 12 CRGs, along with 7 previously reported reference genes (RRGs), were quantified by qRT-PCR across various tissues and developmental stages. The expression stability of the 19 genes was further evaluated by four commonly used algorithms (geNorm, NormFinder, comparative delta Ct, and BestKeeper), and their results were integrated by RefFinder to generate a comprehensive stability ranking. The final results revealed that <em>TkADF1</em> and <em>TkRPT6A</em> were the most suitable internal control genes for the all-tissue group and leaf samples. <em>TkUPL</em> and <em>TkSIZ1</em> were found to be optimal for root samples, while <em>TkADF1</em> and <em>TkSRPRA</em> were preferred choices for latex samples. Moreover, validation using two rubber biosynthesis-related genes (<em>TkFPS1</em> and <em>TkSRPP2</em>) confirmed the reliability of these recommended genes, showing a strong positive correlation with the RNA-seq data. This study provides reliable reference genes for qRT-PCR normalization in TKS, facilitating future research on developmental regulation and natural rubber biosynthesis.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"309 ","pages":"Article 154501"},"PeriodicalIF":4.0,"publicationDate":"2025-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143903919","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Laser microdissection and fluorescence in situ hybridization reveal the tissue-specific gene expression in the ovules of P. tabulaeformis Carr 激光显微解剖和荧光原位杂交技术揭示了油棕胚珠中组织特异性基因的表达
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-22 DOI: 10.1016/j.jplph.2025.154500
Xinyu Zhang , Binli Chen , Xiaoxin Song , Yingqi Wang , Caixia Zheng , Zaixin Gong
{"title":"Laser microdissection and fluorescence in situ hybridization reveal the tissue-specific gene expression in the ovules of P. tabulaeformis Carr","authors":"Xinyu Zhang ,&nbsp;Binli Chen ,&nbsp;Xiaoxin Song ,&nbsp;Yingqi Wang ,&nbsp;Caixia Zheng ,&nbsp;Zaixin Gong","doi":"10.1016/j.jplph.2025.154500","DOIUrl":"10.1016/j.jplph.2025.154500","url":null,"abstract":"<div><div>Ovules are important carriers for seed plant reproduction, and ovules of gymnosperms are composed mainly of female gametophyte (FG) and adjacent diploid tissue (ADT). To investigate tissue-specific genes in the ovules of <em>Pinus tabulaeformis</em> Carr., we used laser microdissection (LMD) to separate FGs and ADTs, and performed linear amplification to construct cDNA libraries, obtaining a total of 156 expressed sequence tags (EST). Furthermore, some differentially expressed genes between FG and ADT of <em>P. tabulaeformis</em> ovule were screened by the analysis of EST. In addition, the expression levels of key genes in fertile line (FL) and sterile line (SL) ovules during development were verified by RT-qPCR, and we found that both <em>PtRPL7a</em> and <em>PtDHN4</em> were more highly expressed in FL in each period (at least 1.7 times that of SL). Finally, fluorescence in situ hybridization (FISH) was used to reveal the temporal and spatial expression patterns of <em>PtRPL7a</em> and <em>PtDHN4</em> in the ovules of <em>P. tabuliformis</em> during ovule development between FL and SL. Our results indicate that the expression levels and the locations of <em>PtRPL7a</em> and <em>PtDHN4</em> show significant differences in different tissues during ovule development between FL and SL. This study further elucidates the molecular mechanism of the ovule abortion of <em>P. tabulaeformis</em> and provides a theoretical basis for the germplasm optimization of gymnosperms.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"309 ","pages":"Article 154500"},"PeriodicalIF":4.0,"publicationDate":"2025-04-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143877442","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
AmCERK1 and AmLYK3 interaction mediates CIP-induced defense responses in A. macrocephala AmCERK1和AmLYK3相互作用介导cip诱导的大头a的防御反应
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-19 DOI: 10.1016/j.jplph.2025.154497
Lei Chen , Xuyan Fu , Kun Wu , Xiangbing Chang , Wei Tian
{"title":"AmCERK1 and AmLYK3 interaction mediates CIP-induced defense responses in A. macrocephala","authors":"Lei Chen ,&nbsp;Xuyan Fu ,&nbsp;Kun Wu ,&nbsp;Xiangbing Chang ,&nbsp;Wei Tian","doi":"10.1016/j.jplph.2025.154497","DOIUrl":"10.1016/j.jplph.2025.154497","url":null,"abstract":"<div><div>Southern blight caused by <em>Sclerotium rolfsii</em> (<em>S. rolfsii</em>) represents a significant threat to the medicinal plant <em>Atractylodes macrocephala</em> Koidz. (<em>A. macrocephala</em>), with effective control measures remaining limited. <em>Chrysanthemum indicum</em> polysaccharides (CIP) have been identified as an elicitor capable of inducing defense responses in <em>A. macrocephala</em> against <em>S. rolfsii</em> infection. However, the molecular mechanisms underlying CIP recognition remain poorly understood. In this study, comparative transcriptome analysis revealed two potential <em>LysM</em>-receptor kinases, Am<em>CERK1</em> and Am<em>LYK3</em>, as candidate receptors for CIP recognition. These genes, which are orthologous to <em>Arabidopsis CERK1</em> and <em>Medicago truncatula LYK3</em>, exhibited significant up-regulation upon CIP treatment. Bimolecular fluorescence complementation (BiFC) assays demonstrated that Am<em>CERK1</em> and Am<em>LYK3</em> interact in a CIP-dependent manner. Transient overexpression experiments further confirmed that CIP treatment markedly enhanced the expression of these receptor genes. Virus-induced gene silencing (VIGS) assays indicated that CIP treatment could partially compensate for the suppression of Am<em>CERK1</em> and Am<em>LYK3</em>, highlighting their critical role in CIP-induced defense responses. Collectively, these findings suggest that Am<em>CERK1</em> and Am<em>LYK3</em> form a pattern recognition receptor (PRR) complex essential for CIP perception, potentially facilitating pattern-triggered immunity (PTI) in <em>A. macrocephala</em>. These findings reveal a novel receptor recognition complex comprising Am<em>CERK1</em> and Am<em>LYK3</em>, offering crucial insights into the mechanisms of innate immune recognition in plants.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"308 ","pages":"Article 154497"},"PeriodicalIF":4.0,"publicationDate":"2025-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143863560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Xanthophyll cycle and photosynthetic electron transport enhanced by galactolipid modification alleviate drought-induced leaf senescence 半乳糖脂修饰增强了叶黄素循环和光合电子传递,减轻了干旱诱导的叶片衰老
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-18 DOI: 10.1016/j.jplph.2025.154499
Jili Xu , Guanqiang Zuo , Shuaikang Liu , Hao Shi , Lina Yin , Shiwen Wang , Xiping Deng
{"title":"Xanthophyll cycle and photosynthetic electron transport enhanced by galactolipid modification alleviate drought-induced leaf senescence","authors":"Jili Xu ,&nbsp;Guanqiang Zuo ,&nbsp;Shuaikang Liu ,&nbsp;Hao Shi ,&nbsp;Lina Yin ,&nbsp;Shiwen Wang ,&nbsp;Xiping Deng","doi":"10.1016/j.jplph.2025.154499","DOIUrl":"10.1016/j.jplph.2025.154499","url":null,"abstract":"<div><div>Previous studies have demonstrated galactolipid modification was involved in drought-induced leaf senescence. Under drought stress, overactivation of the photosynthetic electron transfer chain leads to excessive light energy absorption, resulting in photooxidative damage to crops. The xanthophyll cycle, a key photoprotective mechanism, mitigates light-induced damage by dissipating excess energy as heat. However, the role of the xanthophyll cycle pigments and photosynthetic electron transport in the process of galactolipid modification alleviates drought-induced leaf senescence has not yet been clarified clearly. In this study, a comparative experiment was conducted to investigate changes in the xanthophyll cycle and photosynthetic electron transport during drought and re-watering in two maize varieties: a drought-tolerant variety (Liangyu66) and a senescent variety (Liangyu99). Drought stress induced more severely wilted and leaf senescence in Liangyu99, with lower shoot biomass, photosynthetic rate, chlorophyll <em>a</em>/b, monogalactosyldiacylglycerol (MGDG), digalactosyldiacylglycerol (DGDG) content, corresponding gene expression level and DGDG/MGDG ratio compared to Liangyu66. Furthermore, PSII electron transport rate (ETRⅡ), the PSI electron transport rate (ETRⅠ), and cyclic electron flow (CEF) in Liangyu66 were 14 %, 47 %, and 83 % higher, respectively, than in Liangyu99 under drought stress. Notably, the de-epoxidation state of the xanthophyll cycle (A + Z)/(A + Z + V) was significantly higher in Liangyu66 than in Liangyu99. Non-photochemical quenching (NPQ) increased in both varieties under drought stress, Liangyu66 displayed a higher NPQ than Liangyu99. These findings suggest that galactolipid modification alleviates drought-induced leaf senescence by enhancing the xanthophyll cycle and optimizing photosynthetic electron transport.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"308 ","pages":"Article 154499"},"PeriodicalIF":4.0,"publicationDate":"2025-04-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143859224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Illuminating plant metabolism with genetically encoded biosensors 用基因编码的生物传感器照亮植物代谢
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-17 DOI: 10.1016/j.jplph.2025.154498
Stephan Wagner, Andreas J. Meyer
{"title":"Illuminating plant metabolism with genetically encoded biosensors","authors":"Stephan Wagner,&nbsp;Andreas J. Meyer","doi":"10.1016/j.jplph.2025.154498","DOIUrl":"10.1016/j.jplph.2025.154498","url":null,"abstract":"<div><div>The metabolic flexibility of plants enables them to cope particularly well with changing environmental conditions. This flexibility is achieved by cellular processes that require tight coordination in space and time and constant balancing to maximise plant fitness. If we want to identify crops with higher yields and improved resistance to abiotic and biotic stresses, then we need to unravel these metabolic processes experimentally, and genetically encoded biosensors (GEBs) seem ideal for this. They allow non-invasive monitoring of metabolic processes in living cells over time and with high spatial and temporal resolution. The list of sensors and sensor variants that have been developed or established in plants continues to grow, providing insights into more and more parameters of plant metabolism. This, together with technological advances, also facilitates paraplexing and multiplexing experiments, where several processes are monitored simultaneously by GEBs. Despite these advantages, GEBs need to be used carefully and users must fully understand their characteristics in the chosen experimental plant system in order to draw meaningful conclusions from the spectroscopic changes of a sensor. Here, we aim to provide a list of fluorescent GEBs that can be selected for <em>in planta</em> use and highlight recent biological insights gained from them, focusing on advances where multiple GEBs have been used. We also discuss criteria for selecting an appropriate sensor and aspects of the field that remain challenging, in the hope of helping plant scientists to generate and interpret plant metabolism data using GEBs in a meaningful way.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"311 ","pages":"Article 154498"},"PeriodicalIF":4.0,"publicationDate":"2025-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144330585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metabolome guided treasure hunt - learning from metabolic diversity 代谢组学引导寻宝——从代谢多样性中学习
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-16 DOI: 10.1016/j.jplph.2025.154494
Esra Karakas, Mustafa Bulut, Alisdair Fernie
{"title":"Metabolome guided treasure hunt - learning from metabolic diversity","authors":"Esra Karakas,&nbsp;Mustafa Bulut,&nbsp;Alisdair Fernie","doi":"10.1016/j.jplph.2025.154494","DOIUrl":"10.1016/j.jplph.2025.154494","url":null,"abstract":"<div><div>Metabolomics is a rapidly evolving field focused on the comprehensive identification and quantification of small molecules in biological systems. As the final layer of the biological hierarchy following of the genome, transcriptome and proteome, it presents a dynamic snapshot of phenotype, influenced by genetic, environmental and physiological factors. Whilst the metabolome sits downstream of genes and proteins, there are multiple higher levels—tissues, organs, the entire organism, and interactions with other organisms, which need to be considered in order to fully comprehend organismal biology. Advances in metabolomics continue to expand its applications in plant biology, biotechnology, and natural product discovery unlocking many of nature's most beneficial colors, tastes, nutrients and medicines. Flavonoids and other specialized metabolites are essential for plant defense against oxidative stress and function as key phytonutrients for human health. Recent advancements in gene-editing and metabolic engineering have significantly improved the nutritional value and flavor of crop plants. Here we highlight how advanced metabolic analysis is driving improvements in crops uncovering genes that influence nutrient and flavor profile and plant derived compounds with medicinal potential.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"309 ","pages":"Article 154494"},"PeriodicalIF":4.0,"publicationDate":"2025-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143877441","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Overexpression of FvGCN5 enhances the resistance of woodland strawberry against Botrytis cinerea FvGCN5的过表达增强了林地草莓对灰霉病的抗性
IF 4 3区 生物学
Journal of plant physiology Pub Date : 2025-04-16 DOI: 10.1016/j.jplph.2025.154496
Miao Yu, Jiaqi Zhang, Feifei Bai, Yihan Gao, Shan Jiang, Hui Liu, Aisheng Xiong, Zongming Cheng, Jinsong Xiong
{"title":"Overexpression of FvGCN5 enhances the resistance of woodland strawberry against Botrytis cinerea","authors":"Miao Yu,&nbsp;Jiaqi Zhang,&nbsp;Feifei Bai,&nbsp;Yihan Gao,&nbsp;Shan Jiang,&nbsp;Hui Liu,&nbsp;Aisheng Xiong,&nbsp;Zongming Cheng,&nbsp;Jinsong Xiong","doi":"10.1016/j.jplph.2025.154496","DOIUrl":"10.1016/j.jplph.2025.154496","url":null,"abstract":"<div><div>Epigenetic modifications mediated by histone acetylation play essential roles in plant development and stress response. However, the mechanism of regulating biotic stress through histone acetyltransferase GCN5 in strawberry is still unclear. In this study, we isolated <em>FvGCN5</em> from woodland strawberry and found that FvGCN5 may form the conserved SAGA (Spt-Ada-Gcn5 acetyltransferase) complex through interaction with FvADA2a and FvADA2b. In addition, we found that <em>FvGCN5</em> could be significantly induced by the infection of fungal pathogen <em>Botrytis cinerea</em>, and that the transgenic strawberry plants overexpressing <em>FvGCN5</em> exhibited enhanced resistance against <em>B. cinerea</em>. Further RNA-seq-based transcriptome and quantitative PCR analysis indicated that several disease-resistant genes such as <em>FvMYC2</em> and, <em>FvPR1</em> were significantly upregulated in <em>FvGCN5</em> overexpression lines. Taken together, our study indicates that <em>FvGCN5</em> plays important roles in the resistance against <em>B. cinerea</em> in woodland strawberry through activating disease-resistant genes.</div></div>","PeriodicalId":16808,"journal":{"name":"Journal of plant physiology","volume":"308 ","pages":"Article 154496"},"PeriodicalIF":4.0,"publicationDate":"2025-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143859223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信