Journal of Developmental Biology最新文献

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Immunolocalization of Some Epidermal Proteins and Glycoproteins in the Growing Skin of the Australian Lungfish (Neoceratodus forsteri). 澳大利亚肺鱼(Neoceratodus forsteri)生长皮肤中一些表皮蛋白和糖蛋白的免疫定位。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-08-14 DOI: 10.3390/jdb11030035
Lorenzo Alibardi
{"title":"Immunolocalization of Some Epidermal Proteins and Glycoproteins in the Growing Skin of the Australian Lungfish (<i>Neoceratodus forsteri</i>).","authors":"Lorenzo Alibardi","doi":"10.3390/jdb11030035","DOIUrl":"https://doi.org/10.3390/jdb11030035","url":null,"abstract":"<p><p>Here we report the immunolocalization of mucin, nestin, elastin and three glycoproteins involved in tissue mineralization in small and large juveniles of <i>Neoceratodus forsteri</i>. Both small and larger juvenile epidermis are mucogenic and contain a diffuse immunolabeling for nestin. Sparse PCNA-labeled cells, indicating proliferation, are found in basal and suprabasal epidermal layers. No scales are formed in small juveniles but are present in a 5 cm long juvenile and in larger juveniles. Elastin and a mineralizing matrix are localized underneath the basement membrane of the tail epidermis where lepidotriches are forming. The latter appears as \"circular bodies\" in cross sections and are made of elongated cells surrounding a central amorphous area containing collagen and elastin-like proteins that undergo calcification as evidenced using the von Kossa staining. However, the first calcification sites are the coniform teeth of the small juveniles of 2-3 cm in length. In the superficial dermis of juveniles (16-26 cm in length) where scales are formed, the spinulated outer bony layer (squamulin) of the elasmoid scales contains osteonectin, alkaline phosphatase, osteopontin, and calcium deposits that are instead absent in the underlying layer of elasmodin. In particular, these glycoproteins are localized along the scale margin in juveniles where scales grow, as indicated by the presence of PCNA-labeled cells (proliferating). These observations suggest a continuous deposition of new bone during the growth of the scales, possibly under the action of these mineralizing glycoproteins, like in the endoskeleton of terrestrial vertebrates.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 3","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-08-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10443291/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10060891","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Vasa, Piwi, and Pl10 Expression during Sexual Maturation and Asexual Reproduction in the Annelid Pristina longiseta. Vasa, Piwi和Pl10在环节动物Pristina longiseta性成熟和无性繁殖中的表达。
IF 2.2
Journal of Developmental Biology Pub Date : 2023-08-09 DOI: 10.3390/jdb11030034
Roman P Kostyuchenko, Natalia P Smirnova
{"title":"<i>Vasa</i>, <i>Piwi</i>, and <i>Pl10</i> Expression during Sexual Maturation and Asexual Reproduction in the Annelid <i>Pristina longiseta</i>.","authors":"Roman P Kostyuchenko, Natalia P Smirnova","doi":"10.3390/jdb11030034","DOIUrl":"10.3390/jdb11030034","url":null,"abstract":"<p><p>Naidids are tiny, transparent freshwater oligochaetes, which are well known for their ability to propagate asexually. Despite the fact that sexually mature individuals and cocoons with embryos are sometimes found in nature, in long-period laboratory cultures, worms reproduce agametically only. In this paper, we showed, for the first time, the expression of <i>Vasa</i>, <i>Piwi</i>, and <i>Pl10</i> homologs in mature <i>Pristina longiseta</i> worms with well-developed reproductive system structures and germ cells. Although the animals have been propagated asexually by paratomic fission for over 20 years in our lab, some individuals become sexualized under standard conditions for our laboratory culture and demonstrate various stages of maturation. The fully matured animals developed a complete set of sexual apparatus including spermatheca, atrium, seminal vesicles, and ovisac. They also had a clitellum and were able to form cocoons. The cues for the initiation of sexual maturation are still unknown for <i>P. longiseta</i>; nevertheless, our data suggest that the laboratory strain of <i>P. longiseta</i> maintains the ability to become fully sexually mature and to establish germline products even after a long period of agametic reproduction. On the other hand, many of the sexualized worms formed a fission zone and continued to reproduce asexually. Thus, in this species, the processes of asexual reproduction and sexual maturation do not preclude each other, and <i>Vasa</i>, <i>Piwi</i>, and <i>Pl10</i> homologs are expressed in both somatic and germline tissue including the posterior growth zone, fission zone, nervous system, germline cells, and gametes.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 3","pages":""},"PeriodicalIF":2.2,"publicationDate":"2023-08-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10443295/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10058805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decreased Expression of Pulmonary Homeobox NKX2.1 and Surfactant Protein C in Developing Lungs That Over-Express Receptors for Advanced Glycation End-Products (RAGE). 过度表达高级糖化终产物受体(RAGE)的发育中肺部同源染色体 NKX2.1 和表面活性蛋白 C 表达减少
IF 2.2
Journal of Developmental Biology Pub Date : 2023-07-15 DOI: 10.3390/jdb11030033
Derek M Clarke, Katrina L Curtis, Ryan A Wendt, Brendan M Stapley, Evan T Clark, Nathan Beckett, Kennedy M Campbell, Juan A Arroyo, Paul R Reynolds
{"title":"Decreased Expression of Pulmonary Homeobox NKX2.1 and Surfactant Protein C in Developing Lungs That Over-Express Receptors for Advanced Glycation End-Products (RAGE).","authors":"Derek M Clarke, Katrina L Curtis, Ryan A Wendt, Brendan M Stapley, Evan T Clark, Nathan Beckett, Kennedy M Campbell, Juan A Arroyo, Paul R Reynolds","doi":"10.3390/jdb11030033","DOIUrl":"10.3390/jdb11030033","url":null,"abstract":"<p><p>Receptors for advanced glycation end-products (RAGE) are multi-ligand cell surface receptors of the immunoglobin superfamily prominently expressed by lung epithelium. Previous experiments demonstrated that over-expression of RAGE by murine alveolar epithelium throughout embryonic development causes neonatal lethality coincident with significant lung hypoplasia. In the current study, we evaluated the expression of NKX2.1 (also referred to as TTF-1), a homeodomain-containing transcription factor critical for branching morphogenesis, in mice that differentially expressed RAGE. We also contextualized NKX2.1 expression with the abundance of FoxA2, a winged double helix DNA binding protein that influences respiratory epithelial cell differentiation and surfactant protein expression. Conditional RAGE over-expression was induced in mouse lung throughout gestation (embryonic day E0-18.5), as well as during the critical saccular period of development (E15.5-18.5), and analyses were conducted at E18.5. Histology revealed markedly less lung parenchyma beginning in the canalicular stage of lung development and continuing throughout the saccular period. We discovered consistently decreased expression of both NKX2.1 and FoxA2 in lungs from transgenic (TG) mice compared to littermate controls. We also observed diminished surfactant protein C in TG mice, suggesting possible hindered differentiation and/or proliferation of alveolar epithelial cells under the genetic control of these two critical transcription factors. These results demonstrate that RAGE must be specifically regulated during lung formation. Perturbation of epithelial cell differentiation culminating in respiratory distress and perinatal lethality may coincide with elevated RAGE expression in the lung parenchyma.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 3","pages":""},"PeriodicalIF":2.2,"publicationDate":"2023-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366714/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10251557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evolutionary Change in Gut Specification in Caenorhabditis Centers on the GATA Factor ELT-3 in an Example of Developmental System Drift. 在发育系统漂移的一个例子中,隐杆线虫肠道规格的进化变化以GATA因子ELT-3为中心。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-07-08 DOI: 10.3390/jdb11030032
Gina Broitman-Maduro, Morris F Maduro
{"title":"Evolutionary Change in Gut Specification in <i>Caenorhabditis</i> Centers on the GATA Factor ELT-3 in an Example of Developmental System Drift.","authors":"Gina Broitman-Maduro,&nbsp;Morris F Maduro","doi":"10.3390/jdb11030032","DOIUrl":"https://doi.org/10.3390/jdb11030032","url":null,"abstract":"<p><p>Cells in a developing animal embryo become specified by the activation of cell-type-specific gene regulatory networks. The network that specifies the gut in the nematode <i>Caenorhabditis elegans</i> has been the subject of study for more than two decades. In this network, the maternal factors SKN-1/Nrf and POP-1/TCF activate a zygotic GATA factor cascade consisting of the regulators MED-1,2 → END-1,3 → ELT-2,7, leading to the specification of the gut in early embryos. Paradoxically, the MED, END, and ELT-7 regulators are present only in species closely related to <i>C. elegans</i>, raising the question of how the gut can be specified without them. Recent work found that ELT-3, a GATA factor without an endodermal role in <i>C. elegans</i>, acts in a simpler ELT-3 → ELT-2 network to specify gut in more distant species. The simpler ELT-3 → ELT-2 network may thus represent an ancestral pathway. In this review, we describe the elucidation of the gut specification network in <i>C. elegans</i> and related species and propose a model by which the more complex network might have formed. Because the evolution of this network occurred without a change in phenotype, it is an example of the phenomenon of Developmental System Drift.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 3","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-07-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366740/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10232972","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Patterning of the Vertebrate Head in Time and Space by BMP Signaling. 脊椎动物头部在时间和空间上的BMP信号模式。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-07-03 DOI: 10.3390/jdb11030031
Kongju Zhu, Herman P Spaink, Antony J Durston
{"title":"Patterning of the Vertebrate Head in Time and Space by BMP Signaling.","authors":"Kongju Zhu,&nbsp;Herman P Spaink,&nbsp;Antony J Durston","doi":"10.3390/jdb11030031","DOIUrl":"https://doi.org/10.3390/jdb11030031","url":null,"abstract":"<p><p>How head patterning is regulated in vertebrates is yet to be understood. In this study, we show that frog embryos injected with Noggin at different blastula and gastrula stages had their head development sequentially arrested at different positions. When timed BMP inhibition was applied to BMP-overexpressing embryos, the expression of five genes: <i>xcg-1</i> (a marker of the cement gland, which is the front-most structure in the frog embryo), <i>six3</i> (a forebrain marker), <i>otx2</i> (a forebrain and mid-brain marker), <i>gbx2</i> (an anterior hindbrain marker), and <i>hoxd1</i> (a posterior hindbrain marker) were sequentially fixed. These results suggest that the vertebrate head is patterned from anterior to posterior in a progressive fashion and may involve timed actions of the BMP signaling.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 3","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366882/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10232971","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Molecular and Cellular Characterization of Avian Reticulate Scales Implies the Evo-Devo Novelty of Skin Appendages in Foot Sole. 鸟类网状鳞片的分子和细胞特征揭示了脚底皮肤附属物的进化-进化新颖性。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-07-03 DOI: 10.3390/jdb11030030
Tzu-Yu Liu, Michael W Hughes, Hao-Ven Wang, Wei-Cheng Yang, Cheng-Ming Chuong, Ping Wu
{"title":"Molecular and Cellular Characterization of Avian Reticulate Scales Implies the Evo-Devo Novelty of Skin Appendages in Foot Sole.","authors":"Tzu-Yu Liu,&nbsp;Michael W Hughes,&nbsp;Hao-Ven Wang,&nbsp;Wei-Cheng Yang,&nbsp;Cheng-Ming Chuong,&nbsp;Ping Wu","doi":"10.3390/jdb11030030","DOIUrl":"https://doi.org/10.3390/jdb11030030","url":null,"abstract":"<p><p>Among amniotic skin appendages, avian feathers and mammalian hairs protect their stem cells in specialized niches, located in the collar bulge and hair bulge, respectively. In chickens and alligators, label retaining cells (LRCs), which are putative stem cells, are distributed in the hinge regions of both avian scutate scales and reptilian overlapping scales. These LRCs take part in scale regeneration. However, it is unknown whether other types of scales, for example, symmetrically shaped reticulate scales, have a similar way of preserving their stem cells. In particular, the foot sole represents a special interface between animal feet and external environments, with heavy mechanical loading. This is different from scutate-scale-covered metatarsal feet that function as protection. Avian reticulate scales on foot soles display specialized characteristics in development. They do not have a placode stage and lack β-keratin expression. Here, we explore the molecular and cellular characteristics of avian reticulate scales. RNAscope analysis reveals different molecular profiles during surface and hinge determination compared with scutate scales. Furthermore, reticulate scales express Keratin 15 (<i>K15</i>) sporadically in both surface- and hinge-region basal layer cells, and LRCs are not localized. Upon wounding, the reticulate scale region undergoes repair but does not regenerate. Our results suggest that successful skin appendage regeneration requires localized stem cell niches to guide regeneration.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 3","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366821/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10232969","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Tumor Suppressor Adenomatous Polyposis Coli (apc) Is Required for Neural Crest-Dependent Craniofacial Development in Zebrafish. 肿瘤抑制因子腺瘤性大肠息肉病(apc)是斑马鱼神经嵴依赖性颅面发育所必需的。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-06-29 DOI: 10.3390/jdb11030029
Xiaolei Liu, William D Jones, Mathieu Quesnel-Vallières, Sudhish A Devadiga, Kristin Lorent, Alexander J Valvezan, Rebecca L Myers, Ning Li, Christopher J Lengner, Yoseph Barash, Michael Pack, Peter S Klein
{"title":"The Tumor Suppressor <i>Adenomatous Polyposis Coli (apc)</i> Is Required for Neural Crest-Dependent Craniofacial Development in Zebrafish.","authors":"Xiaolei Liu,&nbsp;William D Jones,&nbsp;Mathieu Quesnel-Vallières,&nbsp;Sudhish A Devadiga,&nbsp;Kristin Lorent,&nbsp;Alexander J Valvezan,&nbsp;Rebecca L Myers,&nbsp;Ning Li,&nbsp;Christopher J Lengner,&nbsp;Yoseph Barash,&nbsp;Michael Pack,&nbsp;Peter S Klein","doi":"10.3390/jdb11030029","DOIUrl":"https://doi.org/10.3390/jdb11030029","url":null,"abstract":"<p><p>Neural crest (NC) is a unique vertebrate cell type arising from the border of the neural plate and epidermis that gives rise to diverse tissues along the entire body axis. Roberto Mayor and colleagues have made major contributions to our understanding of NC induction, delamination, and migration. We report that a truncating mutation of the classical tumor suppressor <i>Adenomatous Polyposis Coli</i> (<i>apc)</i> disrupts craniofacial development in zebrafish larvae, with a marked reduction in the cranial neural crest (CNC) cells that contribute to mandibular and hyoid pharyngeal arches. While the mechanism is not yet clear, the altered expression of signaling molecules that guide CNC migration could underlie this phenotype. For example, <i>apc<sup>mcr/mcr</sup></i> larvae express substantially higher levels of <i>complement c3</i>, which Mayor and colleagues showed impairs CNC cell migration when overexpressed. However, we also observe reduction in <i>stroma-derived factor 1</i> (<i>sdf1/cxcl12</i>), which is required for CNC migration into the head. Consistent with our previous work showing that APC directly enhances the activity of glycogen synthase kinase 3 (GSK-3) and, independently, that GSK-3 phosphorylates multiple core mRNA splicing factors, we identify 340 mRNA splicing variations in <i>apc</i> mutant zebrafish, including a splice variant that deletes a conserved domain in <i>semaphorin 3f</i> (<i>sema3f</i>), an axonal guidance molecule and a known regulator of CNC migration. Here, we discuss potential roles for <i>apc</i> in CNC development in the context of some of the seminal findings of Mayor and colleagues.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 3","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10366761/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10305027","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Regionalized Protein Localization Domains in the Zebrafish Hair Cell Kinocilium. 斑马鱼毛细胞肌纤毛的区域化蛋白定位结构域。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-06-16 DOI: 10.3390/jdb11020028
Timothy Erickson, William Paul Biggers, Kevin Williams, Shyanne E Butland, Alexandra Venuto
{"title":"Regionalized Protein Localization Domains in the Zebrafish Hair Cell Kinocilium.","authors":"Timothy Erickson,&nbsp;William Paul Biggers,&nbsp;Kevin Williams,&nbsp;Shyanne E Butland,&nbsp;Alexandra Venuto","doi":"10.3390/jdb11020028","DOIUrl":"https://doi.org/10.3390/jdb11020028","url":null,"abstract":"<p><p>Sensory hair cells are the receptors for auditory, vestibular, and lateral line sensory organs in vertebrates. These cells are distinguished by \"hair\"-like projections from their apical surface collectively known as the hair bundle. Along with the staircase arrangement of the actin-filled stereocilia, the hair bundle features a single, non-motile, true cilium called the kinocilium. The kinocilium plays an important role in bundle development and the mechanics of sensory detection. To understand more about kinocilial development and structure, we performed a transcriptomic analysis of zebrafish hair cells to identify cilia-associated genes that have yet to be characterized in hair cells. In this study, we focused on three such genes-<i>ankef1a</i>, <i>odf3l2a</i>, and <i>saxo2</i>-because human or mouse orthologs are either associated with sensorineural hearing loss or are located near uncharacterized deafness loci. We made transgenic fish that express fluorescently tagged versions of their proteins, demonstrating their localization to the kinocilia of zebrafish hair cells. Furthermore, we found that Ankef1a, Odf3l2a, and Saxo2 exhibit distinct localization patterns along the length of the kinocilium and within the cell body. Lastly, we have reported a novel overexpression phenotype of Saxo2. Overall, these results suggest that the hair cell kinocilium in zebrafish is regionalized along its proximal-distal axis and set the groundwork to understand more about the roles of these kinocilial proteins in hair cells.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 2","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10299642/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9722380","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Lost and Found: Unraveling the Functions of Orphan Genes. 失物招领:揭开孤儿基因的功能。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-06-13 DOI: 10.3390/jdb11020027
Ali Zeeshan Fakhar, Jinbao Liu, Karolina M Pajerowska-Mukhtar, M Shahid Mukhtar
{"title":"The Lost and Found: Unraveling the Functions of Orphan Genes.","authors":"Ali Zeeshan Fakhar,&nbsp;Jinbao Liu,&nbsp;Karolina M Pajerowska-Mukhtar,&nbsp;M Shahid Mukhtar","doi":"10.3390/jdb11020027","DOIUrl":"10.3390/jdb11020027","url":null,"abstract":"<p><p>Orphan Genes (OGs) are a mysterious class of genes that have recently gained significant attention. Despite lacking a clear evolutionary history, they are found in nearly all living organisms, from bacteria to humans, and they play important roles in diverse biological processes. The discovery of OGs was first made through comparative genomics followed by the identification of unique genes across different species. OGs tend to be more prevalent in species with larger genomes, such as plants and animals, and their evolutionary origins remain unclear but potentially arise from gene duplication, horizontal gene transfer (HGT), or de novo origination. Although their precise function is not well understood, OGs have been implicated in crucial biological processes such as development, metabolism, and stress responses. To better understand their significance, researchers are using a variety of approaches, including transcriptomics, functional genomics, and molecular biology. This review offers a comprehensive overview of the current knowledge of OGs in all domains of life, highlighting the possible role of dark transcriptomics in their evolution. More research is needed to fully comprehend the role of OGs in biology and their impact on various biological processes.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 2","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10299390/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9717109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
An Emerging Animal Model for Querying the Role of Whole Genome Duplication in Development, Evolution, and Disease. 一种新出现的动物模型,可用于查询全基因组复制在发育、进化和疾病中的作用。
IF 2.7
Journal of Developmental Biology Pub Date : 2023-06-06 DOI: 10.3390/jdb11020026
Mara Schvarzstein, Fatema Alam, Muhammad Toure, Judith L Yanowitz
{"title":"An Emerging Animal Model for Querying the Role of Whole Genome Duplication in Development, Evolution, and Disease.","authors":"Mara Schvarzstein, Fatema Alam, Muhammad Toure, Judith L Yanowitz","doi":"10.3390/jdb11020026","DOIUrl":"10.3390/jdb11020026","url":null,"abstract":"<p><p>Whole genome duplication (WGD) or polyploidization can occur at the cellular, tissue, and organismal levels. At the cellular level, tetraploidization has been proposed as a driver of aneuploidy and genome instability and correlates strongly with cancer progression, metastasis, and the development of drug resistance. WGD is also a key developmental strategy for regulating cell size, metabolism, and cellular function. In specific tissues, WGD is involved in normal development (e.g., organogenesis), tissue homeostasis, wound healing, and regeneration. At the organismal level, WGD propels evolutionary processes such as adaptation, speciation, and crop domestication. An essential strategy to further our understanding of the mechanisms promoting WGD and its effects is to compare isogenic strains that differ only in their ploidy. <i>Caenorhabditis elegans</i> (<i>C. elegans</i>) is emerging as an animal model for these comparisons, in part because relatively stable and fertile tetraploid strains can be produced rapidly from nearly any diploid strain. Here, we review the use of Caenorhabditis polyploids as tools to understand important developmental processes (e.g., sex determination, dosage compensation, and allometric relationships) and cellular processes (e.g., cell cycle regulation and chromosome dynamics during meiosis). We also discuss how the unique characteristics of the <i>C. elegans</i> WGD model will enable significant advances in our understanding of the mechanisms of polyploidization and its role in development and disease.</p>","PeriodicalId":15563,"journal":{"name":"Journal of Developmental Biology","volume":"11 2","pages":""},"PeriodicalIF":2.7,"publicationDate":"2023-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10299280/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9717103","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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