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Around the World in 26 Million Years: Diversification and Biogeography of Pantropical Grass-Yellow Eurema Butterflies (Pieridae: Coliadinae) 2600万年前的世界:泛热带草黄蛱蝶的多样性和生物地理学(蝶科:蛱蝶科)
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-22 DOI: 10.1111/jbi.15107
Jing V. Leong, Pável Matos-Maraví, Rayner Núñez, Renato Nunes, Weijun Liang, Michael F. Braby, Tenzing Doleck, Kwaku Aduse-Poku, Yutaka Inayoshi, Yu-Feng Hsu, Niklas Wahlberg, Djunijanti Peggie, Alma B. Mohagan, Dave P. Mohagan, Julio A. Genaro, Antonio R. Perez-Asso, Krushnamegh Kunte, Dino J. Martins, Szabolcs Sáfián, Akito Y. Kawahara, Naomi E. Pierce, David J. Lohman
{"title":"Around the World in 26 Million Years: Diversification and Biogeography of Pantropical Grass-Yellow Eurema Butterflies (Pieridae: Coliadinae)","authors":"Jing V. Leong, Pável Matos-Maraví, Rayner Núñez, Renato Nunes, Weijun Liang, Michael F. Braby, Tenzing Doleck, Kwaku Aduse-Poku, Yutaka Inayoshi, Yu-Feng Hsu, Niklas Wahlberg, Djunijanti Peggie, Alma B. Mohagan, Dave P. Mohagan, Julio A. Genaro, Antonio R. Perez-Asso, Krushnamegh Kunte, Dino J. Martins, Szabolcs Sáfián, Akito Y. Kawahara, Naomi E. Pierce, David J. Lohman","doi":"10.1111/jbi.15107","DOIUrl":"https://doi.org/10.1111/jbi.15107","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>Grass-yellow butterflies (<i>Eurema</i>) are a group of pantropical Pieridae distributed throughout Asia, Australasia, Africa and the New World. However, little is known about their diversification, including the biogeographic mechanism(s) explaining their circumglobal distribution. We present the first densely sampled, time-calibrated phylogeny and biogeographic reconstruction of grass-yellows to confirm the monophyly of the genera, re-evaluate their taxonomy and infer the biogeographic events contributing to their worldwide distribution.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Global tropics and subtropics.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Taxon</h3>\u0000 \u0000 <p>The butterfly tribe Euremini (Pieridae: Coliadinae).</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We analysed up to 391 genetic loci from 126 samples of 66 ingroup species. Divergence dating was accomplished in a Bayesian phylogenetic framework using secondary calibration points, and maximum likelihood models of various biogeographic models were fitted to the data using the R package BioGeoBEARS. We used the best fitting model to estimate relative dispersal events with biogeographical stochastic mapping. Finally, we estimated branch-specific speciation and extinction rates to assess the diversification history of the group.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>Different phylogenomic analyses converged on similar topologies with robust support. Grass-yellows emerged <i>ca</i>. 26 Mya in the New World, and a single extant lineage dispersed to Asia in the early Miocene, where they diversified and dispersed to Africa and Australasia. The fastest rates of diversification occurred in the Old World tropics during the late Miocene. Many of the grass-yellow genera were either paraphyletic or polyphyletic as traditionally circumscribed. To maintain nomenclatural stability, we place all grass-yellows in <i>Eurema sensu lato</i> and recognise two subgenera: <i>Eurema</i> (<i>Abaeis</i>) and <i>Eurema</i> (<i>Eurema</i>).</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>Grass-yellow butterflies originated in the Americas and attained their global distributional patterns via dispersal. The Indo-Australian and Caribbean archipelagoes seem to have accelerated the diversification of the group, and movement in and out of these island regions was frequent. Althoug","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.15107","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143846251","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Historical Biogeography, Speciation, and Niche Evolution of Alouatta (Primates, Atelidae) 阿鲁阿塔(灵长类,Atelidae)的历史生物地理学、物种形成与生态位演化
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-22 DOI: 10.1111/jbi.15110
J. B. Schwantes, L. A. Antunes, V. B. Fortes, D. A. S. Graichen, L. J. Robe
{"title":"Historical Biogeography, Speciation, and Niche Evolution of Alouatta (Primates, Atelidae)","authors":"J. B. Schwantes,&nbsp;L. A. Antunes,&nbsp;V. B. Fortes,&nbsp;D. A. S. Graichen,&nbsp;L. J. Robe","doi":"10.1111/jbi.15110","DOIUrl":"https://doi.org/10.1111/jbi.15110","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>This study aims to evaluate the biogeographical and ecological patterns associated with the diversification and distribution of <i>Alouatta</i> species, commonly known as howler monkeys. Our research provides valuable insights into the comprehension of the evolutionary history of this genus.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Local</h3>\u0000 \u0000 <p>Neotropical region.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Time Period</h3>\u0000 \u0000 <p>Last 13 Mya.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Major Taxa Studied</h3>\u0000 \u0000 <p>11 species of <i>Alouatta</i>.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>A dataset including 32 nuclear and mitochondrial genes was employed to reconstruct a dated maximum composite phylogenetic tree. Contemporary biodiversity data were employed in the context of this phylogenetic tree to reconstruct ancestral distribution and to infer the main speciation mechanisms. Niche evolution tests were performed for different bioclimatic and topographic variables to access patterns of niche divergence or niche conservatism.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>The diversification of <i>Alouatta</i> seems to have started ~13 Mya, probably near the Northwestern Amazon, and appears to have been driven mostly by niche divergence in parapatry. Despite this, niche conservatism or convergence led to significant overlap in ecological niches between some species, particularly those representing the early divergences of both South American clades.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>The parapatric distribution presented by several pairs of <i>Alouatta</i> species generally evolved through environmental niche divergence driven by dispersal. The conservation or convergence of some niche traits is correlated with some secondary contacts, which may be increasing due to habitat loss. Niche conservation patterns found for some climatic variables highlight the susceptibility of the genus to climate change.</p>\u0000 </section>\u0000 </div>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143846252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Geomorphological River Characteristics Explain Species Turnover in Amphibians, Reptiles and Lemurs in Madagascar's Eastern Rainforests 地貌河流特征解释了马达加斯加东部雨林中两栖动物、爬行动物和狐猴的物种更替
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-19 DOI: 10.1111/jbi.15109
Dominik Schüßler, Jonas Bremer, Martin Sauerwein, Ute Radespiel
{"title":"Geomorphological River Characteristics Explain Species Turnover in Amphibians, Reptiles and Lemurs in Madagascar's Eastern Rainforests","authors":"Dominik Schüßler,&nbsp;Jonas Bremer,&nbsp;Martin Sauerwein,&nbsp;Ute Radespiel","doi":"10.1111/jbi.15109","DOIUrl":"https://doi.org/10.1111/jbi.15109","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The riverine barrier hypothesis is often tested as a driver for allopatric speciation. Rivers are usually treated as static landscape features characterised by their width and elevation of their headwaters. We aim to investigate the role of rivers as barriers using a comprehensive database of geomorphological characteristics by assessing their influence on species turnover rates.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Eastern Madagascar.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Taxon&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Sixty-two taxa from 11 genera of lemurs, amphibians and reptiles.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We compiled 21 geomorphological variables for 45 major rivers, estimated species turnover rates from species assemblages on either side and modelled the influence of river characteristics on species diversity. Topographic depressions, identified from longitudinal river profiles, and landscape heterogeneity were further analysed as potential palaeoclimatic refugia and alternative speciation drivers.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;A total of 24 rivers acted as species barriers. Three of these had disproportionately high species turnover rates and shared a set of distinct geomorphological features like the maximum elevation of the watershed, high flow accumulation values at the outlet and at an elevation of 800 m and a high concavity of the longitudinal river profile. Other variables like landscape heterogeneity along the main river channel and length of the coastal plain further helped to differentiate between rivers with intermediate turnover rates. Species richness peaked in northeastern Madagascar, a region with the highest abundance of topographic depressions and inferred palaeo-wetlands.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Geomorphological river characteristics effectively explained variations in species turnover rates. However, it remains uncertain whether rivers functioned as secondary dispersal barriers and thereby maintainers of species diversity, rather than as primary drivers of allopatric speciation. Additionally, we emphasise the role of refugia during palaeoclimatic oscillations, which are often associated with topographic depressions. Overall, integrating rivers as dynamic fluvial systems through space and time into biogeographic studies offers valuable insights into speciati","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.15109","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143845923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sugar-Rich Resources Mediate Geographic Morphological Variation in a Dominant, Neotropical Savanna Ant 富糖资源介导优势新热带草原蚂蚁的地理形态变异
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-18 DOI: 10.1111/jbi.15111
Marianne Azevedo-Silva, Sebastian F. Sendoya, Marina C. Côrtes, Pedro A. S. Longo, Anselmo Nogueira, Gustavo M. Mori, Shun K. Hirota, Yoshihisa Suyama, Anete P. Souza, Paulo S. Oliveira
{"title":"Sugar-Rich Resources Mediate Geographic Morphological Variation in a Dominant, Neotropical Savanna Ant","authors":"Marianne Azevedo-Silva,&nbsp;Sebastian F. Sendoya,&nbsp;Marina C. Côrtes,&nbsp;Pedro A. S. Longo,&nbsp;Anselmo Nogueira,&nbsp;Gustavo M. Mori,&nbsp;Shun K. Hirota,&nbsp;Yoshihisa Suyama,&nbsp;Anete P. Souza,&nbsp;Paulo S. Oliveira","doi":"10.1111/jbi.15111","DOIUrl":"https://doi.org/10.1111/jbi.15111","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Trait variation across geographic gradients can reveal how species respond to different environmental settings, which is crucial under the growing threat of climate change. Although on the basis of evolutionary theory, the patterns and drivers of intraspecific functional variation remain largely underexplored. In ants, pilosity and body size are morphological traits associated to thermoregulation and heat tolerance, which are critical concerns in the context of global warming. Here, we focused on the dominant ant &lt;i&gt;Camponotus crassus&lt;/i&gt; to investigate trait variation and its potential drivers across a latitudinal gradient in the Brazilian Cerrado savanna.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Brazilian Cerrado savanna.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Taxon&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;&lt;i&gt;Camponotus crassus&lt;/i&gt; Mayr, 1862 (Hymenoptera: Formicidae).&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We measured mesosoma pilosity and body size of &lt;i&gt;C. crassus&lt;/i&gt; across multiple sites, and evaluated their relationship with &lt;i&gt;temperature, rainfall, solar radiation, vegetation&lt;/i&gt; and &lt;i&gt;sugar-rich resource&lt;/i&gt; variables. We also assessed morphological and genetic covariation to search for possible phenotypic plasticity or adaptation in &lt;i&gt;C. crassus&lt;/i&gt;.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Only sugar-rich resources were found to significantly influence &lt;i&gt;C. crassus&lt;/i&gt; pilosity. Specifically, a negative relationship between ant pilosity and &lt;i&gt;sugar-rich resources&lt;/i&gt; (i.e., proportion of plants with extrafloral nectaries and hemipteran trophobionts) was found. No covariation between pilosity and genetic dissimilarities was observed, suggesting phenotypic plasticity. None of the variables were significant to predict body size, while this trait positively covaried with genetics.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Our findings suggest resource availability as a critical factor for species thermoregulation under environmental change, a hypothesis previously reported in the literature. We emphasise the importance of examining intraspecific variation and phenotypic plasticity across large geographic scales, particularly under the scenario of rapid global change and the current threat to Cerrado savanna. Our work covers a still poorly investigated aspect of intraspecific variation of tropical eusocial insects,","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.15111","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143845848","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Composition and Functional Diversity of Juvenile Groundfish Assemblages in the California Current 加利福尼亚海流中底栖鱼幼鱼群落的组成和功能多样性
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-15 DOI: 10.1111/jbi.15108
Ryan Gasbarro, Jarrod A. Santora, Megan Cimino, Adena Schonfeld, Steven J. Bograd, Elliott L. Hazen, Brian K. Wells, John C. Field
{"title":"Composition and Functional Diversity of Juvenile Groundfish Assemblages in the California Current","authors":"Ryan Gasbarro,&nbsp;Jarrod A. Santora,&nbsp;Megan Cimino,&nbsp;Adena Schonfeld,&nbsp;Steven J. Bograd,&nbsp;Elliott L. Hazen,&nbsp;Brian K. Wells,&nbsp;John C. Field","doi":"10.1111/jbi.15108","DOIUrl":"https://doi.org/10.1111/jbi.15108","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Long-term monitoring data at the biogeographic scale are essential for developing baselines of biodiversity patterns and tools to diagnose natural cycles, trends, and anomalous events to assess threats from climate change. However, studies using these data often limit their analyses to relatively few metrics that may not adequately capture the breadth of biodiversity. Here, we calculate a suite of compositional and functional biodiversity metrics—collectively comprising ecoscapes—to better resolve assemblage-level responses to environmental variability and test the spatiotemporal lability of faunal biogeographic provinces.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;California Current Large Marine Ecosystem (CCLME).&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Taxon&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Young-of-the-year juvenile groundfish assemblages (&lt;i&gt;n&lt;/i&gt; = 45 taxa).&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Species composition and abundance data from two long-term fisheries-independent surveys were collated with a functional trait database for pelagic taxa. Distinct assemblages were identified through cluster analysis. Compositional and functional alpha- and beta-level biodiversity metrics were then calculated to characterise assemblage-level biodiversity and to identify patterns of regional community composition and turnover in space and time.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Ecoscapes revealed the assemblage structure, functional diversity, and turnover of juvenile groundfish from 1990 to 2023. Canonical CCLME biogeographic provinces were mostly supported, but with notable spatiotemporal variation and differences across compositional and functional diversity metrics. Highly productive (unproductive) years were associated with the widespread extent of assemblages characterised by high (low) biodiversity and abundance.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The differences between patterns of functional and compositional diversity of assemblages highlight the potential of ecoscapes to better resolve biogeographic patterns with promising applications for future studies. Ecoscapes may provide explicit links between biodiversity and ecosystem functioning and services, and additional insights into assemblage responses and resilience to environmental variability that can aid biodiversity monitoring and rapidly disseminate","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.15108","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143845988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Habitat Suitability of the Sand Lizard (Lacerta agilis) at Its Distribution Limit—An Analysis Based on Citizen Science Data and Machine Learning 沙蜥分布极限的生境适宜性——基于公民科学数据和机器学习的分析
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-10 DOI: 10.1111/jbi.15099
Alina Krämer, Hanna Meyer, Sascha Buchholz
{"title":"Habitat Suitability of the Sand Lizard (Lacerta agilis) at Its Distribution Limit—An Analysis Based on Citizen Science Data and Machine Learning","authors":"Alina Krämer,&nbsp;Hanna Meyer,&nbsp;Sascha Buchholz","doi":"10.1111/jbi.15099","DOIUrl":"https://doi.org/10.1111/jbi.15099","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;To inform evidence-based conversation strategies this study aims to assess habitat suitability and connectivity for the Sand Lizard (&lt;i&gt;Lacerta agilis&lt;/i&gt;) at its northwestern distribution limit by integrating remote sensing data, machine learning techniques, and citizen science contributions. Comprehending the population dynamics of the Sand Lizard &lt;i&gt;Lacerta agilis&lt;/i&gt; is imperative for ensuring the preservation of metapopulations of this matrix-sensitive species.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;NW-Germany, Netherlands.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We integrated citizen science data from observation.org with multispectral Sentinel-2 imagery and auxiliary spatial datasets, including soil types, vegetation indices, topographic features, and proximity to various habitat types. We trained Random Forests which were employed to predict habitat suitability across a region encompassing North Rhine-Westphalia and Lower Saxony in Germany, as well as the Netherlands, at a 10-m spatial resolution. Interpretable machine learning techniques were applied to identify key environmental drivers and corridor analysis was conducted to identify potential barriers to habitat colonisation.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The ability of the model to predict habitat suitability was high (Area under the Curve = 0.935 + − 0.05). Thirty-three parameters were identified as relevant habitat determinants, where the most important group of variables were associated with topography, solar irradiation and soil types. Urban structures, however, further emerged as relevant habitat parameters influencing habitat suitability. Connectivity was mainly provided by linear structures such as railway lines and roadsides.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusion&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Understanding habitat suitability and connectivity is critical for the effective preservation of metapopulations and the development of robust conservation strategies. Our study demonstrates how integrating remote sensing data with citizen science contributions can effectively be applied for habitat modelling, particularly over large geographical areas. Contrary to previous assumptions that peripheral populations, such as those at the northwestern limit of the Sand Lizard's distribution, may be more specialised, our findings reveal that these lizards exhibit considerable adaptability to a range of environmental conditions, including human-alt","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.15099","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143846046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recent Long-Distance-Dispersal Explains the Range Disjunction of the Old-Word Cockleburs (Xanthium strumarium) 最近的长距离传播解释了古词Cockleburs (Xanthium strumarium)的范围分离
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-10 DOI: 10.1111/jbi.15104
Eleonora Manzo, Salvatore Tomasello
{"title":"Recent Long-Distance-Dispersal Explains the Range Disjunction of the Old-Word Cockleburs (Xanthium strumarium)","authors":"Eleonora Manzo,&nbsp;Salvatore Tomasello","doi":"10.1111/jbi.15104","DOIUrl":"https://doi.org/10.1111/jbi.15104","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>In the present study, we focused in addressing questions concerning the biogeographic history of <i>Xanthium strumarium</i>, an Old World native species whose close relatives are generally all native to the American continent.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>The species distribution covers the Eurasian continent and some African regions and close islands.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We employed herbarium material and target enrichment (herbariomics) sequence data of over 700 single copy loci to estimate the divergence times of the species. Ancestral range reconstruction was employed to test different hypotheses on the events that determined the arrival, differentiation and dispersal of the ancestor of <i>X. strumarium</i> in the Old World.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>The crown age of <i>X. strumarium</i> was estimated to be ~156.58 ka. In the phylogenomic analysis, the individuals from the different geographic areas grouped mostly congruently based on their collection origin, the earliest diverging clade comprising samples from India, and then progressively clades including samples from Asia, Europe and Africa. The same pattern was observed in the biogeographic analysis, with a movement of the ancestral ranges going from east to west. The ancestral range of the species was inferred to be the Indian subcontinent.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>Both the use of herbarium specimens as old as 240 years and the use of modern sequencing techniques clarified the phylogenetic relationships, divergence time and biogeography of <i>Xanthium strumarium.</i> Most probably, the ancestor of the species reached the Old World by way of a trans-Pacific long-distance dispersal from the Americas to Southeastern Asia, followed by westward colonisation of the Old World.</p>\u0000 </section>\u0000 </div>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.15104","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143846045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Feeding Specialisation Shapes Avian Functional Diversity Along a Tropical Rainforest Elevational Gradient 沿着热带雨林海拔梯度,觅食专业化塑造了鸟类的功能多样性
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-07 DOI: 10.1111/jbi.15103
Kryštof Korejs, Bonny Koane, Samuel Jeppy, Leonardo Ré Jorge, Vojtěch Novotný, Kateřina Sam
{"title":"Feeding Specialisation Shapes Avian Functional Diversity Along a Tropical Rainforest Elevational Gradient","authors":"Kryštof Korejs,&nbsp;Bonny Koane,&nbsp;Samuel Jeppy,&nbsp;Leonardo Ré Jorge,&nbsp;Vojtěch Novotný,&nbsp;Kateřina Sam","doi":"10.1111/jbi.15103","DOIUrl":"https://doi.org/10.1111/jbi.15103","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Avian functional diversity in montane systems has been scrutinised by researchers seeking to uncover deterministic processes driving community assembly. However, many tropical rainforests lack fully surveyed elevational gradients that could inform on functional ecology of avian assemblages. Here we expand global coverage of elevational trends in bird functional diversity to the third largest contiguous rainforest in the world.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;A 3500 m uninterrupted rainforest gradient in Papua New Guinea.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Taxon&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Birds.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We conducted point-count surveys of bird communities, sampling eight elevational sites from 200 m above sea level to the treeline at 3700 m. Functional diversity indices (functional richness, evenness, and divergence) were examined using Bayesian generalised additive models after standardising for bird species richness. Additionally, we analysed phylogenetic diversity and structure, and examined variation in individual functional traits, including feeding guild, morphology, and dispersal ability.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Functional richness declined sharply from the lowlands to 1700 m above sea level, followed by a weak decrease towards the treeline. Functional evenness decreased monotonically with elevation, while functional divergence increased at low elevations and again near the treeline. Phylogenetic diversity exhibited a monotonic decline accompanied by increased phylogenetic clustering at higher elevations. The mid-elevation collapse of functional richness was likely caused by trophic interactions. Reduced the availability of large fruits caused declines in frugivore body size and beak dimensions, while high abundance of invertebrates favoured functionally uniform insectivores. Near the treeline, bird communities displayed morphological shifts towards terrestrial lifestyles with reduced dispersal ability, suggesting environmental filtering by forest structure.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;By examining trends in individual functional traits, we highlight the role of trophic interactions in shaping avian functional diversity in tropical montane systems. Similar research using robust trait data can deepen our understanding of ecosystem functions and guide conservation strategies for different functional groups of birds across tropical regions.&lt;/p&gt;\u0000 &lt;/s","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143845881","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Rise (and Fall?) of European Water Shrews: Phylogeography and Species Distribution Models Uncover the Impact of Climate Change 欧洲水鼩的兴起(和衰落?):系统地理学和物种分布模型揭示气候变化的影响
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-06 DOI: 10.1111/jbi.15073
T. Neves, J. T. Tapisso, S. I. Gabriel, L. Rychlik, M. G. Ramalhinho, L. Borda-de-Água, A. Mishta, M. L. Mathias
{"title":"The Rise (and Fall?) of European Water Shrews: Phylogeography and Species Distribution Models Uncover the Impact of Climate Change","authors":"T. Neves,&nbsp;J. T. Tapisso,&nbsp;S. I. Gabriel,&nbsp;L. Rychlik,&nbsp;M. G. Ramalhinho,&nbsp;L. Borda-de-Água,&nbsp;A. Mishta,&nbsp;M. L. Mathias","doi":"10.1111/jbi.15073","DOIUrl":"https://doi.org/10.1111/jbi.15073","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Predicting the effects of climate change on species distributions, while considering their genetic differentiation and evolutionary history is crucial to develop conservation measures. Here we aim to: assess the phylogenetic and phylogeographical relationships between the European &lt;i&gt;Neomys&lt;/i&gt; species and respective lineages; infer the demographic history of all genetic lineages and estimate the potential impact of future climate change on their distribution and persistence of the genetic lineages.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Europe.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Time Period&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The demographic analysis ranges from 350,000 ago to the present. The future climate change scenarios modelling ranges from the present to 2100.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Major Taxa Studies&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Three species belonging to the genus &lt;i&gt;Neomys&lt;/i&gt;.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;We reconstructed the phylogenetic relationships between the species in Europe and unveiled their demographic history based on &lt;i&gt;cytochrome b&lt;/i&gt; gene sequences while using presence data to model how their distribution might change under distinct climate change scenarios.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Our results confirm the existence of a distinct &lt;i&gt;N. milleri&lt;/i&gt; lineage in the Italian Peninsula, whose population size has been relatively constant over time. Except for this lineage, all species' populations have likely been increasing until at least 25,000 years ago. While our future projections are beneficial to &lt;i&gt;N. milleri&lt;/i&gt;, relatively inconsequential to &lt;i&gt;N. fodiens&lt;/i&gt;, but suggest the likely extinction of &lt;i&gt;N. anomalus&lt;/i&gt;, endemic to the Iberian Peninsula and the Italian lineage of &lt;i&gt;N. milleri&lt;/i&gt;.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusions&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The Mediterranean Peninsulas, acting as refugia from the extreme cold conditions during the Last Glacial Period, contributed to the genetic differentiation of &lt;i&gt;N. anomalus&lt;/i&gt; and the Italian lineage of &lt;i&gt;N. milleri&lt;/i&gt;. However, as climate warms, the Peninsulas will no longer be able to sustain these species/lineages. Given the Peninsulas' status as biodiversity hotspots, this vulnerability of their ecosystems to climate change should mobilise conservation efforts guided by phylogeographic approaches, allowing us to uncover putative lineages or endemisms before their potential extinct","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143845825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Host-Cleptoparasite Biogeographical Congruence Through Time: The Case of Cuckoo Oil Bees 寄主-寄生生物地理的一致性:以杜鹃油蜂为例
IF 3.4 2区 环境科学与生态学
Journal of Biogeography Pub Date : 2025-02-06 DOI: 10.1111/jbi.15101
Aline C. Martins, Felipe V. Freitas, Léo C. Rocha-Filho, Michael G. Branstetter, Antonio J. C. Aguiar, Eduardo A. B. Almeida, Thais Vasconcelos
{"title":"Host-Cleptoparasite Biogeographical Congruence Through Time: The Case of Cuckoo Oil Bees","authors":"Aline C. Martins,&nbsp;Felipe V. Freitas,&nbsp;Léo C. Rocha-Filho,&nbsp;Michael G. Branstetter,&nbsp;Antonio J. C. Aguiar,&nbsp;Eduardo A. B. Almeida,&nbsp;Thais Vasconcelos","doi":"10.1111/jbi.15101","DOIUrl":"https://doi.org/10.1111/jbi.15101","url":null,"abstract":"&lt;div&gt;\u0000 \u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Aim&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Insect brood parasites (i.e., cleptoparasites), like cuckoo bees, typically attack hosts within specific lineages, but seem to be less constrained by the biogeographical movements of their hosts compared to obligate parasites. Cuckoo bees depend on stable host populations, being particularly sensitive to environmental changes and thus valuable bioindicators of the bee community health. We here test the congruence between the biogeographical history of cuckoo oil bees and their oil bee hosts.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Location&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The Americas.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Taxon&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Bees (Hymenoptera, Apidae).&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Methods&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;Using phylogenomic and Sanger sequence data, we present new time-calibrated phylogenies for cuckoo oil bees in the ericrocidine line and their oil bee hosts, &lt;i&gt;Centris&lt;/i&gt; and &lt;i&gt;Epicharis.&lt;/i&gt; We estimate their ancestral ranges using six historical biogeographical models on a set of 100 trees, randomly sampled from the posterior distribution of phylogenies in each group, thus accounting for uncertainties in divergence time estimates and model selection.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Results&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The origin of the hosts stem in the Cretaceous precedes the origin of their cleptoparasite's stem in the Palaeocene. Cleptoparasite and host crown origins were synchronous in the Eocene, and both took place in tropical South America. While the pair Rhathymini-&lt;i&gt;Epicharis&lt;/i&gt; remained mostly associated within this region, &lt;i&gt;Centris&lt;/i&gt; and their cleptoparasites expanded their distribution to other parts of Neotropical and Nearctic regions in independent range expansions events. In all cases, host range shifts preceded the cleptoparasite shifts.&lt;/p&gt;\u0000 &lt;/section&gt;\u0000 \u0000 &lt;section&gt;\u0000 \u0000 &lt;h3&gt; Main Conclusion&lt;/h3&gt;\u0000 \u0000 &lt;p&gt;The biogeographical history of cleptoparasitic oil bees and oil-collecting hosts is generally congruent in time and space. Events of range expansion mainly occurred in the more species-rich lineages of cleptoparasites. Range shifts in cleptoparasites followed the distribution of their hosts and coincided with the distribution of oil-producing plants visited by the host bees. Our results broaden our understanding of the complex biogeography of interacting partners and on how changes in host distributions may impact cleptoparasitic bees.&lt;/p&gt;\u0000 &lt;/sectio","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":"52 5","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.15101","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143845824","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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