Integrative Organismal Biology最新文献

{"title":"Morphological Diversity of Turtle Hyoid Apparatus is Linked to Feeding Behavior.","authors":"G Jorgewich-Cohen, I Werneburg, M Jobbins, G S Ferreira, M D Taylor, D Bastiaans, M R Sánchez-Villagra","doi":"10.1093/iob/obae014","DOIUrl":"10.1093/iob/obae014","url":null,"abstract":"<p><p>The hyoid apparatus of tetrapods is highly diverse in its morphology. It plays an important role in feeding, breathing, sound production, and various other behaviors. Among turtles, the diversity of the hyoid apparatus has been recurrently linked to their habitat. The ossification of the hyoid corpus is often the main trait used in correlations with \"niche\" occupancy, an ossified corpus being associated with aquatic environments and a cartilaginous corpus with terrestrial life. Most studies conducted so far have focused on species belonging to Testudinoidea, the clade that occupies the biggest diversity of habitats (i.e., terrestrial, semi-terrestrial, and aquatic animals), while other turtle lineages have been largely understudied. We assessed the adult anatomy of the hyoid apparatus of 92 turtle species from all \"families\", together with ossification sequences from embryological series of 11 species, some described for the first time here. Using nearly 40 different discrete anatomical characters, we discuss the evolutionary patterns and the biological significance of morphological transformations in the turtle hyoid elements. Morphological changes are strongly associated to feeding modes, with several instances of convergent evolution within and outside the Testudines clade, and are not as strongly connected to habitat as previously thought. Some of the hyoid character states we describe are diagnostic of specific turtle clades, thus providing phylogenetically relevant information.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11090499/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140916431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Corticosterone Contributes to Diet-Induced Reprogramming of Post-Metamorphic Behavior in Spadefoot Toads","authors":"A. M. Shephard, S. R. Lagon, S. Jacobsen, K. Millar, C. C. Ledon-Rettig","doi":"10.1093/iob/obae012","DOIUrl":"https://doi.org/10.1093/iob/obae012","url":null,"abstract":"\u0000 Stressful experiences in early life can have phenotypic effects that persist into, or manifest during, adulthood. In vertebrates, such carryover effects can be driven by stress-induced secretion of glucocorticoid hormones, such as corticosterone, which can lead to developmental reprogramming of hypothalamic-pituitary-adrenal/interrenal axis activity and behavior. Nutritional stress in the form of early life nutrient restriction is well known to modify later life behaviors and stress activity through corticosterone-related mechanisms. However, it is not known whether corticosterone is also mechanistically involved in carryover effects induced by a different form of nutritional variation: the use of alternate or entirely novel types of dietary resources. The plains spadefoot (Spea bombifrons) presents an excellent system for testing this question, since larvae of this species have evolved to use two alternate diet types: an ancestral detritus-based diet and a more novel diet of live shrimp. While previous work has shown that feeding on the novel shrimp diet influences juvenile (i.e., post-metamorphic) behavior and corticosterone levels, it is unclear whether these diet-induced carryover effects are mediated by diet-induced corticosterone, itself. To test for the mechanistic role of corticosterone in diet-induced carryover effects, we experimentally treated S. bombifrons larvae with exogenous corticosterone and measured subsequent effects on juvenile behavior and corticosterone levels. We found that while shrimp-fed larvae had elevated corticosterone levels, treatment of larvae with corticosterone itself had effects on juvenile behavior that partially resembled those carryover effects induced by the shrimp diet, such as altered food seeking and higher locomotor activity. However, unlike carryover effects caused by the shrimp diet, larval corticosterone exposure did not affect juvenile corticosterone levels. Overall, our study shows that corticosterone-related mechanisms are likely involved in carryover effects induced by a novel diet, yet such diet-induced carryover effects are not driven by corticosterone alone.","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140663753","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Morphological Diversity and Evolution of Jaw Morphologies in Zeiform Fishes (Teleostei, Paracanthopterygii).","authors":"J W Peters, K K Duclos, M V H Wilson, T C Grande","doi":"10.1093/iob/obae011","DOIUrl":"10.1093/iob/obae011","url":null,"abstract":"<p><p>Zeiformes (dories, tinselfishes, and oreos) are primarily benthopelagic acanthomorph fishes, distributed between 50 and 1000 m depth on continental slopes and on flanks of oceanic islands and seamounts. Among the interesting morphological adaptations of zeiform fishes are their unique and highly protrusible jaws involving premaxillae with long ascending processes and a four-bar linkage, including mobile palatines that pivot on their posterior articulation. This adaptation for increased jaw protrusion has enabled zeiform fishes to capture elusive prey more efficiently and is arguably a major factor in their morphological diversity and evolutionary success. This study examines the evolution of zeiform jaw morphologies using 3D landmark-based multivariate morphometrics as well as phylomorphospace analysis. Results show that the descendants of the zeiform ancestor branched rapidly early in their history, retaining conservative jaw morphologies during this early branching, but subsequently strongly diverged in many of the resulting lineages. Results from this study are compared with earlier research based on overall body form, demonstrating that morphological variation within Zeiformes arose along at least two distinct trajectories: body form and jaw morphology. Variation among genera in body form is not associated with variation among the same genera in jaw morphology, and vice versa. Hypotheses to explain the apparent decoupling of body shape and jaw morphology are addressed along with avenues for further study to better understand the morphological evolution of these iconic fishes.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11090498/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140916427","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Morphological Species Delimitation in the Western Pond Turtle (Actinemys): Can Machine Learning Methods Aid in Cryptic Species Identification?","authors":"R. W. Burroughs, J. F. Parham, B. L. Stuart, P. D. Smits, K. D. Angielczyk","doi":"10.1093/iob/obae010","DOIUrl":"https://doi.org/10.1093/iob/obae010","url":null,"abstract":"\u0000 As the discovery of cryptic species has increased in frequency, there has been interest in whether geometric morphometric data can detect fine-scale patterns of variation that can be used to morphologically diagnose such species. We used a combination of geometric morphometric data and an ensemble of five supervised machine learning methods to investigate whether plastron shape can differentiate two putative cryptic turtle species, Actinemys marmorata and Actinemys pallida. Actinemys has been the focus of considerable research due to its biogeographic distribution and conservation status. Despite this work, reliable morphological diagnoses for its two species are still lacking. We validated our approach on two datasets, one consisting of eight morphologically disparate emydid species, the other consisting of two subspecies of Trachemys (T. scripta scripta, T. scripta elegans). The validation tests returned near-perfect classification rates, demonstrating that plastron shape is an effective means for distinguishing taxonomic groups of emydids via machine learning methods. By contrast the same methods did not return high classification rates for a set of alternative phylogeographic and morphological binning schemes in Actinemys. All classification hypotheses performed poorly relative to the validation datasets and no single hypothesis was unequivocally supported for Actinemys. Two hypotheses had machine learning performance that was marginally better than our remaining hypotheses. In both cases, those hypotheses favored a two-species split between A. marmorata and A. pallida specimens, lending tentative morphological support to the hypothesis of two Actinemys species. However, the machine learning results also underscore that Actinemys as a whole has lower levels of plastral variation than other turtles within Emydidae, but the reason for this morphological conservatism is unclear.","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140753923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Computational approaches and observer variation in the 3D musculoskeletal modeling of the heads of Anolis","authors":"A. D. Lagorio, F. R. McGechie, M. G. Fields, J. Fortner, E. Mackereth, C Perez, A. T. Wilken, M. Leal, C. V. Ward, K. M. Middleton, C. M. Holliday","doi":"10.1093/iob/obae009","DOIUrl":"https://doi.org/10.1093/iob/obae009","url":null,"abstract":"\u0000 High-resolution imaging, 3D modeling, and quantitative analyses are equipping evolutionary biologists with new approaches to understanding the variation and evolution of the musculoskeletal system. However, challenges with interpreting DiceCT data and higher order use of modeled muscles have not yet been fully explored, and the error in and accuracy of some digital methods remain unclear. West Indian Anolis lizards are a model clade for exploring patterns in functional adaptation, ecomorphology, and sexual size dimorphism in vertebrates. These lizards possess numerous jaw muscles with potentially different anatomies that sculpt the adductor chamber of the skull. Here we test approaches to quantifying the musculoskeletal shape of the heads of two species of Anolis: A. pulchellus and A. sagrei. We employ comparative approaches such as DiceCT segmentation of jaw muscles, 3D surface-attachment mapping, and 3D landmarking with the aim of exploring muscle volumes, 3D muscle fiber architecture, and sexual dimorphism of the skull. We then compare sources of measurement error in these 3D analyses while also presenting new 3D musculoskeletal data from the Anolis feeding apparatus. These findings demonstrate the accessibility and repeatability of these emerging techniques as well as provide details regarding the musculoskeletal anatomy of the heads of A. pulchellus and A. sagrei which show potential for further research of comparative biomechanics and evolution in the clade.","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140216760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Egg-clutch Biomechanics Affect Escape-Hatching Behavior And Performance","authors":"B. A. Güell, J. G. McDaniel, K. Warkentin","doi":"10.1093/iob/obae006","DOIUrl":"https://doi.org/10.1093/iob/obae006","url":null,"abstract":"\u0000 Arboreal embryos of phyllomedusine treefrogs hatch prematurely to escape snake predation, cued by vibrations in their egg clutches during attacks. However, escape success varies between species, from ∼77% in Agalychnis callidryas to just ∼9% in A. spurrelli at 1 day premature. Both species begin responding to snake attacks at similar developmental stages, when vestibular mechanosensory function begins, suggesting that sensory ability does not limit the hatching response in A. spurrelli. Agalychnis callidryas clutches are thick and gelatinous, while A. spurrelli clutches are thinner and stiffer. We hypothesized that this structural difference alters the egg motion excited by attacks. Since vibrations excited by snakes must propagate through clutches to reach embryos, we hypothesized that the species difference in attack-induced hatching may reflect effects of clutch biomechanics on the cues available to embryos. Mechanics predicts that thinner, stiffer structures have higher free vibration frequencies, greater spatial attenuation, and faster vibration damping than thicker, more flexible structures. We assessed clutch biomechanics by embedding small accelerometers in clutches of both species and recording vibrations during standardized excitation tests at two distances from the accelerometer. Analyses of recorded vibrations showed that A. spurrelli clutches have higher free vibration frequencies and greater vibration damping than A. callidryas clutches. Higher frequencies elicit less hatching in A. callidryas, and greater damping could reduce the amount of vibration embryos can perceive. To directly test if clutch structure affects escape success in snake attacks, we transplanted A. spurrelli eggs into A. callidryas clutches and compared their escape rates with untransplanted, age-matched conspecific controls. We also performed reciprocal transplantation of eggs between pairs of A. callidryas clutches as a method control. Transplanting A. spurrelli embryos into A. callidryas clutches nearly tripled their escape success (44%) compared to conspecific controls (15%), whereas transplanting A. callidryas embryos into different A. callidryas clutches only increased escape success by 10%. At hatching competence, A. callidryas eggs are no longer jelly-encapsulated, while A. spurrelli eggs retain their jelly coat. Therefore, we compared the hatching response and latency of A. spurrelli in de-jellied eggs and their control, jelly-encapsulated siblings using manual egg-jiggling to simulate predation cues. Embryos in de-jellied eggs were more likely to hatch and hatched faster than control siblings. Together, our results suggest that the properties of parentally produced egg-clutch structures, including their vibration biomechanics, constrain the information available to A. spurrelli embryos and contribute to interspecific differences in hatching responses to predator attacks.","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140247846","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Design of a Highly Sensitive, Low-cost Underwater Force Plate to Record Substrate Reaction Forces","authors":"K. M. Gamel, Sophia Pinti, Henry C. Astley","doi":"10.1093/iob/obae008","DOIUrl":"https://doi.org/10.1093/iob/obae008","url":null,"abstract":"\u0000 The study of underwater walking presents major challenges because the small forces applied during underwater walking are difficult to measure due to the lack of a sufficiently sensitive force plate that functions underwater. Understanding the force interaction between the underwater walker and the substrate may lead to better understanding of the evolution, ecology, and biomechanics of underwater walking. The shift from aquatic to terrestrial life was a crucial transition in animal evolution where, underwater walking preceded the invasion of land and combines mechanics from terrestrial locomotion (substrate reaction forces) and aquatic swimming (buoyancy and drag). In this work, we describe our design of a low-cost underwater force plate made using 3D printed multi axis load cells equipped with commercial strain gauges amplified with a custom circuit board, and custom code to gather force data. The use of 3D printed sensors allows customization of the material and thickness of the shear beam load cell to accommodate the loads for a wide range of study species. We show that our design can detect loads as small as 1mN (filtered) with minimal noise and present sample live animal trials of several species. The 3D multiaxial load cells, circuit design, and custom code are open-source and available online.","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140248180","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Intraspecific Variation in the Placement of Campaniform Sensilla on the Wings of the Hawkmoth <i>Manduca Sexta</i>.","authors":"K E Stanchak, T Deora, A I Weber, M K Hickner, A Moalin, L Abdalla, T L Daniel, B W Brunton","doi":"10.1093/iob/obae007","DOIUrl":"10.1093/iob/obae007","url":null,"abstract":"<p><p>Flight control requires active sensory feedback, and insects have many sensors that help them estimate their current locomotor state, including campaniform sensilla (CS), which are mechanoreceptors that sense strain resulting from deformation of the cuticle. CS on the wing detect bending and torsional forces encountered during flight, providing input to the flight feedback control system. During flight, wings experience complex spatio-temporal strain patterns. Because CS detect only local strain, their placement on the wing is presumably critical for determining the overall representation of wing deformation; however, how these sensilla are distributed across wings is largely unknown. Here, we test the hypothesis that CS are found in stereotyped locations across individuals of <i>Manduca sexta</i>, a hawkmoth. We found that although CS are consistently found on the same veins or in the same regions of the wings, their total number and distribution can vary extensively. This suggests that there is some robustness to variation in sensory feedback in the insect flight control system. The regions where CS are consistently found provide clues to their functional roles, although some patterns might be reflective of developmental processes. Collectively, our results on intraspecific variation in CS placement on insect wings will help reshape our thinking on the utility of mechanosensory feedback for insect flight control and guide further experimental and comparative studies.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11074993/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140876336","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Metameric Echinoderm","authors":"R. L. Turner","doi":"10.1093/iob/obae005","DOIUrl":"https://doi.org/10.1093/iob/obae005","url":null,"abstract":"\u0000 Animal phyla are distinguished by their body plans, the ways in which their bodies are organized. A distinction is made, for example, among phyla with bodies of many segments (metameric; e.g., annelids, arthropods, chordates), others with completely unsegmented bodies (americ; e.g., flatworms, mollusks), and a few phyla with bodies of two or three regions (oligomeric; e.g., echinoderms, hemichordates). The conventional view of echinoderms as oligomeric coelomates adequately considers early development, but it fails to recognize the metameric body plan that develops in the juvenile rudiment and progresses during indeterminate adult growth. As in the three phyla traditionally viewed to be metameric (annelids, arthropods, chordates), metamery, or metamerism, in echinoderms occurs by (1) subterminal budding of (2) serially repeated components of (3) mesodermal origin. A major difference in most echinoderms is that metamery is expressed along multiple body axes, usually five. The view of a metameric echinoderm might invite new discussions of metazoan body plans and new approaches to the study of morphogenesis, particularly in comparative treatments with annelids, arthropods, and chordates.","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140082777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Screening H3 Histone Acetylation in a Wild Bird, the House Sparrow (<i>Passer Domesticus</i>).","authors":"D Ray, E L Sheldon, C Zimmer, L B Martin, A W Schrey","doi":"10.1093/iob/obae004","DOIUrl":"10.1093/iob/obae004","url":null,"abstract":"<p><p>Epigenetic mechanisms are increasingly understood to have major impacts across ecology. However, one molecular epigenetic mechanism, DNA methylation, currently dominates the literature. A second mechanism, histone modification, is likely important to ecologically relevant phenotypes and thus warrants investigation, especially because molecular interplay between methylation and histone acetylation can strongly affect gene expression. There are a limited number of histone acetylation studies on non-model organisms, yet those that exist show that it can impact gene expression and phenotypic plasticity. Wild birds provide an excellent system to investigate histone acetylation, as free-living individuals must rapidly adjust to environmental change. Here, we screen histone acetylation in the house sparrow (<i>Passer domesticus</i>); we studied this species because DNA methylation was important in the spread of this bird globally. This species has one of the broadest geographic distributions in the world, and part of this success is related to the way that it uses methylation to regulate its gene expression. Here, we verify that a commercially available assay that was developed for mammals can be used in house sparrows. We detected high variance in histone acetylation among individuals in both liver and spleen tissue. Further, house sparrows with higher epigenetic potential in the <i>Toll Like Receptor-4 (TLR-4</i>) promoter (i.e., CpG content) had higher histone acetylation in liver. Also, there was a negative correlation between histone acetylation in spleen and <i>TLR-4</i> expression. In addition to validating a method for measuring histone acetylation in wild songbirds, this study also shows that histone acetylation is related to epigenetic potential and gene expression, adding a new study option for ecological epigenetics.</p>","PeriodicalId":13666,"journal":{"name":"Integrative Organismal Biology","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10956398/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140184401","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}