Environmental microbiology最新文献

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The underground world of plant disease: Rhizosphere dysbiosis reduces above-ground plant resistance to bacterial leaf spot and alters plant transcriptome 植物病害的地下世界:根圈菌群失调降低了地面植物对细菌性叶斑病的抵抗力,并改变了植物转录组。
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-07-15 DOI: 10.1111/1462-2920.16676
Toi Ketehouli, Josephine Pasche, Victor Hugo Buttrós, Erica M. Goss, Samuel J. Martins
{"title":"The underground world of plant disease: Rhizosphere dysbiosis reduces above-ground plant resistance to bacterial leaf spot and alters plant transcriptome","authors":"Toi Ketehouli,&nbsp;Josephine Pasche,&nbsp;Victor Hugo Buttrós,&nbsp;Erica M. Goss,&nbsp;Samuel J. Martins","doi":"10.1111/1462-2920.16676","DOIUrl":"10.1111/1462-2920.16676","url":null,"abstract":"<p>Just as the human gut microbiome is colonized by a variety of microbes, so too is the rhizosphere of plants. An imbalance in this microbial community, known as dysbiosis, can have a negative impact on plant health. This study sought to explore the effect of rhizosphere dysbiosis on the health of tomato plants (<i>Solanum lycopersicum</i> L.), using them and the foliar bacterial spot pathogen <i>Xanthomonas perforans</i> as model organisms. The rhizospheres of 3-week-old tomato plants were treated with either streptomycin or water as a control, and then spray-inoculated with <i>X. perforans</i> after 24 h. Half of the plants that were treated with both streptomycin and <i>X. perforans</i> received soil microbiome transplants from uninfected plant donors 48 h after the streptomycin was applied. The plants treated with streptomycin showed a 26% increase in disease severity compared to those that did not receive the antibiotic. However, the plants that received the soil microbiome transplant exhibited an intermediate level of disease severity. The antibiotic-treated plants demonstrated a reduced abundance of rhizobacterial taxa such as Cyanobacteria from the genus <i>Cylindrospermum</i>. They also showed a down-regulation of genes related to plant primary and secondary metabolism, and an up-regulation of plant defence genes associated with induced systemic resistance. This study highlights the vital role that beneficial rhizosphere microbes play in disease resistance, even against foliar pathogens.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 7","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-07-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16676","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141619691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The impact of fungi on soil protist communities in European cereal croplands 真菌对欧洲谷物耕地土壤原生生物群落的影响。
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-07-12 DOI: 10.1111/1462-2920.16673
Florine Degrune, Kenneth Dumack, Masahiro Ryo, Gina Garland, Sana Romdhane, Aurélien Saghaï, Samiran Banerjee, Anna Edlinger, Chantal Herzog, David S. Pescador, Pablo García-Palacios, Anna Maria Fiore-Donno, Michael Bonkowski, Sara Hallin, Marcel G. A. van der Heijden, Fernando T. Maestre, Laurent Philippot, Michael Glemnitz, Klaus Sieling, Matthias C. Rillig
{"title":"The impact of fungi on soil protist communities in European cereal croplands","authors":"Florine Degrune,&nbsp;Kenneth Dumack,&nbsp;Masahiro Ryo,&nbsp;Gina Garland,&nbsp;Sana Romdhane,&nbsp;Aurélien Saghaï,&nbsp;Samiran Banerjee,&nbsp;Anna Edlinger,&nbsp;Chantal Herzog,&nbsp;David S. Pescador,&nbsp;Pablo García-Palacios,&nbsp;Anna Maria Fiore-Donno,&nbsp;Michael Bonkowski,&nbsp;Sara Hallin,&nbsp;Marcel G. A. van der Heijden,&nbsp;Fernando T. Maestre,&nbsp;Laurent Philippot,&nbsp;Michael Glemnitz,&nbsp;Klaus Sieling,&nbsp;Matthias C. Rillig","doi":"10.1111/1462-2920.16673","DOIUrl":"10.1111/1462-2920.16673","url":null,"abstract":"<p>Protists, a crucial part of the soil food web, are increasingly acknowledged as significant influencers of nutrient cycling and plant performance in farmlands. While topographical and climatic factors are often considered to drive microbial communities on a continental scale, higher trophic levels like heterotrophic protists also rely on their food sources. In this context, bacterivores have received more attention than fungivores. Our study explored the connection between the community composition of protists (specifically Rhizaria and Cercozoa) and fungi across 156 cereal fields in Europe, spanning a latitudinal gradient of 3000 km. We employed a machine-learning approach to measure the significance of fungal communities in comparison to bacterial communities, soil abiotic factors, and climate as determinants of the Cercozoa community composition. Our findings indicate that climatic variables and fungal communities are the primary drivers of cercozoan communities, accounting for 70% of their community composition. Structural equation modelling (SEM) unveiled indirect climatic effects on the cercozoan communities through a change in the composition of the fungal communities. Our data also imply that fungivory might be more prevalent among protists than generally believed. This study uncovers a hidden facet of the soil food web, suggesting that the benefits of microbial diversity could be more effectively integrated into sustainable agriculture practices.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 7","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-07-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16673","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141598943","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Determinants in the phage life cycle: The dynamic nature of ssDNA phage FLiP and host interactions under varying environmental conditions and growth phases 噬菌体生命周期的决定因素:不同环境条件和生长阶段下 ssDNA FLiP 噬菌体与宿主相互作用的动态性质。
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-07-01 DOI: 10.1111/1462-2920.16670
Kati Mäkelä, Elina Laanto, Lotta-Riina Sundberg
{"title":"Determinants in the phage life cycle: The dynamic nature of ssDNA phage FLiP and host interactions under varying environmental conditions and growth phases","authors":"Kati Mäkelä,&nbsp;Elina Laanto,&nbsp;Lotta-Riina Sundberg","doi":"10.1111/1462-2920.16670","DOIUrl":"10.1111/1462-2920.16670","url":null,"abstract":"<p>The influence of environmental factors on the interactions between phages and bacteria, particularly single-stranded DNA (ssDNA) phages, has been largely unexplored. In this study, we used <i>Finnlakevirus</i> FLiP, the first known ssDNA phage species with a lipid membrane, as our model phage. We examined the infectivity of FLiP with three <i>Flavobacterium</i> host strains, B330, B167 and B114. We discovered that FLiP infection is contingent on the host strain and conditions such as temperature and bacterial growth phase. FLiP can infect its hosts across a wide temperature range, but optimal phage replication varies with each host. We uncovered some unique aspects of phage infectivity: FLiP has limited infectivity in liquid-suspended cells, but it improves when cells are surface-attached. Moreover, FLiP infects stationary phase B167 and B114 cells more rapidly and efficiently than exponentially growing cells, a pattern not observed with the B330 host. We also present the first experimental evidence of endolysin function in ssDNA phages. The activity of FLiP's lytic enzymes was found to be condition-dependent. Our findings underscore the importance of studying phage ecology in contexts that are relevant to the environment, as both the host and the surrounding conditions can significantly alter the outcome of phage–host interactions.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 7","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16670","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141476238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction to “Xenobiotic estradiol-17ß alters gut microbiota of hatchling American alligators (Alligator mississippiensis)” 更正 "异生物雌二醇-17ß改变幼鳄肠道微生物群"
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-06-25 DOI: 10.1111/1462-2920.16667
{"title":"Correction to “Xenobiotic estradiol-17ß alters gut microbiota of hatchling American alligators (Alligator mississippiensis)”","authors":"","doi":"10.1111/1462-2920.16667","DOIUrl":"10.1111/1462-2920.16667","url":null,"abstract":"<p>\u0000 <span>Murphy, K.M.</span>, <span>Watkins, M.M.</span>, <span>Finger, J.W.</span>, <span>Kelley, M.D.</span>, <span>Elsey, R.M.</span>, <span>Warner, D.A.</span>, <span>Mendonça, M.T.</span> (<span>2022</span>) <span>Xenobiotic estradiol-17ß alters gut microbiota of hatchling American alligators (<i>Alligator mississippiensis</i>)</span>. <i>Environmental Microbiology</i>, <span>24</span>(<span>12</span>), <span>6336</span>–<span>6347</span>. https://doi.org/10.1111/1462-2920.16222\u0000 </p><p>In Figure 2B, we report no statistical significance between treatment groups (<i>P</i> &gt; 0.05) using a non-metric multidimensional scaling plot (NMDS) followed by an analysis of similarity (ANOSIM). We later state “Bray–Curtis NMDS showed different patterns of clustering of samples across treatment groups (Figure 2B). However, bacterial community structure did not differ between groups (R = 0.026, p = 0.28), suggesting that microbiomes of each treatment group were similar.”</p><p>In the following discussion, we expand on this by stating “One of the most interesting results from our study shows that exposure to a relatively low concentration of E2 increases microbiota absolute abundances but does not influence microbiota diversity. This dose-dependent effect suggests that varying concentrations of E2 may influence microbial community composition, in terms of alpha and beta diversity, in different ways.”</p><p>Upon revisiting these analyses, we discovered that the metadata file used to generate the NMDS plot was out of order; meaning, the samples displayed in the published beta diversity plot are not correctly associated to treatment groups. When this file is in the correct order, we found a different pattern in that the experimental groups do significantly differ from the control group.</p><p>We would like to issue a correction to Figure 2B and to correct our statement in the results section to read “Bray–Curtis NMDS showed different patterns of clustering of samples across treatment groups (Figure 2B). Indeed, bacterial community structure differs between groups (R = 0.208, p = 0.002), suggesting that microbiomes of each treatment group were distinct from one another.” We would also like to correct the statement in the discussion section to read “One of the most interesting results from our study shows that exposure to rising concentrations of E2 increases microbiota abundances but decreases alpha diversity. Additionally, community composition was distinct between treatment groups. This dose-dependent effect suggests that varying concentrations of E2 may influence microbial community composition in different ways.”</p><p>We apologize for this error and even though this result becomes statistically significant after our re-analysis, it has minimal effect on the scientific conclusions of our work.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 6","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16667","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141448922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A genome catalogue of mercury-methylating bacteria and archaea from sediments of a boreal river facing human disturbances 面临人类干扰的北方河流沉积物中汞甲基化细菌和古细菌的基因组目录
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-06-23 DOI: 10.1111/1462-2920.16669
Charlène Lawruk-Desjardins, Veronika Storck, Dominic E. Ponton, Marc Amyot, David A. Walsh
{"title":"A genome catalogue of mercury-methylating bacteria and archaea from sediments of a boreal river facing human disturbances","authors":"Charlène Lawruk-Desjardins,&nbsp;Veronika Storck,&nbsp;Dominic E. Ponton,&nbsp;Marc Amyot,&nbsp;David A. Walsh","doi":"10.1111/1462-2920.16669","DOIUrl":"10.1111/1462-2920.16669","url":null,"abstract":"<p>Methyl mercury, a toxic compound, is produced by anaerobic microbes and magnifies in aquatic food webs, affecting the health of animals and humans. The exploration of mercury methylators based on genomes is still limited, especially in the context of river ecosystems. To address this knowledge gap, we developed a genome catalogue of potential mercury-methylating microorganisms. This was based on the presence of <i>hgcAB</i> from the sediments of a river affected by two run-of-river hydroelectric dams, logging activities and a wildfire. Through the use of genome-resolved metagenomics, we discovered a unique and diverse group of mercury methylators. These were dominated by members of the metabolically versatile Bacteroidota and were particularly rich in microbes that ferment butyrate. By comparing the diversity and abundance of mercury methylators between sites subjected to different disturbances, we found that ongoing disturbances, such as the input of organic matter related to logging activities, were particularly conducive to the establishment of a mercury-methylating niche. Finally, to gain a deeper understanding of the environmental factors that shape the diversity of mercury methylators, we compared the mercury-methylating genome catalogue with the broader microbial community. The results suggest that mercury methylators respond to environmental conditions in a manner similar to the overall microbial community. Therefore, it is crucial to interpret the diversity and abundance of mercury methylators within their specific ecological context.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 6","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16669","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141445010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multi-omics analysis of antagonistic interactions among free-living Pseudonocardia from diverse ecosystems 对来自不同生态系统的自由生活假心皮虫之间拮抗相互作用的多组学分析。
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-06-20 DOI: 10.1111/1462-2920.16635
Jonathan Parra, Scott A. Jarmusch, Katherine R. Duncan
{"title":"Multi-omics analysis of antagonistic interactions among free-living Pseudonocardia from diverse ecosystems","authors":"Jonathan Parra,&nbsp;Scott A. Jarmusch,&nbsp;Katherine R. Duncan","doi":"10.1111/1462-2920.16635","DOIUrl":"10.1111/1462-2920.16635","url":null,"abstract":"<p>Actinomycetes are a phylogenetically diverse bacterial group which are widely distributed across terrestrial and aquatic ecosystems. Within this order, the genus <i>Pseudonocardia</i> and their specialised metabolites have been the focus of previous ecological studies due to their antagonistic interactions with other microorganisms and their mutualistic interactions with insects. However, the chemical ecology of free-living <i>Pseudonocardia</i> remains understudied. This study applies a multi-omics approach to investigate the chemical ecology of free-living actinomycetes from the genus <i>Pseudonocardia</i>. In a comparative genomics analysis, it was observed that the biosynthetic gene cluster family distribution was influenced mainly by phylogenetic distance rather than the geographic or ecological origin of strains. This finding was also observed in the mass spectrometry-based metabolomic profiles of nine <i>Pseudonocardia</i> species isolated from marine sediments and two terrestrial species. Antagonist interactions between these 11 species were examined, and matrix-assisted laser desorption/ionisation-mass spectrometry imaging was used to examine in situ chemical interactions between the Southern Ocean strains and their phylogenetically close relatives. Overall, it was demonstrated that phylogeny was the main predictor of antagonistic interactions among free-living <i>Pseudonocardia</i>. Moreover, two features at <i>m</i>/<i>z</i> 441.15 and <i>m</i>/<i>z</i> 332.20 were identified as metabolites related to these interspecies interactions.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 6","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16635","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141426559","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch 在太平洋大垃圾带的细菌定居者中寻找色素。
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-06-20 DOI: 10.1111/1462-2920.16639
Brittan S. Scales, Christiane Hassenrück, Lynn Moldaenke, Julia Hassa, Christian Rückert-Reed, Christoph Rummel, Corinna Völkner, Robby Rynek, Tobias Busche, Jörn Kalinowski, Annika Jahnke, Mechthild Schmitt-Jansen, Katrin Wendt-Potthoff, Sonja Oberbeckmann
{"title":"Hunting for pigments in bacterial settlers of the Great Pacific Garbage Patch","authors":"Brittan S. Scales,&nbsp;Christiane Hassenrück,&nbsp;Lynn Moldaenke,&nbsp;Julia Hassa,&nbsp;Christian Rückert-Reed,&nbsp;Christoph Rummel,&nbsp;Corinna Völkner,&nbsp;Robby Rynek,&nbsp;Tobias Busche,&nbsp;Jörn Kalinowski,&nbsp;Annika Jahnke,&nbsp;Mechthild Schmitt-Jansen,&nbsp;Katrin Wendt-Potthoff,&nbsp;Sonja Oberbeckmann","doi":"10.1111/1462-2920.16639","DOIUrl":"10.1111/1462-2920.16639","url":null,"abstract":"<p>The Great Pacific Garbage Patch, a significant collection of plastic introduced by human activities, provides an ideal environment to study bacterial lifestyles on plastic substrates. We proposed that bacteria colonizing the floating plastic debris would develop strategies to deal with the ultraviolet-exposed substrate, such as the production of antioxidant pigments. We observed a variety of pigmentation in 67 strains that were directly cultivated from plastic pieces sampled from the Garbage Patch. The genomic analysis of four representative strains, each distinct in taxonomy, revealed multiple pathways for carotenoid production. These pathways include those that produce less common carotenoids and a cluster of photosynthetic genes. This cluster appears to originate from a potentially new species of the <i>Rhodobacteraceae</i> family. This represents the first report of an aerobic anoxygenic photoheterotrophic bacterium from plastic biofilms. Spectral analysis showed that the bacteria actively produce carotenoids, such as beta-carotene and beta-cryptoxanthin, and bacteriochlorophyll a. Furthermore, we discovered that the genetic ability to synthesize carotenoids is more common in plastic biofilms than in the surrounding water communities. Our findings suggest that plastic biofilms could be an overlooked source of bacteria-produced carotenoids, including rare forms. It also suggests that photoreactive molecules might play a crucial role in bacterial biofilm communities in surface water.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 6","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16639","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141426558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pinpointing the microbiota of tardigrades: What is really there? 精确定位沙星人的微生物群:那里到底有什么?
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-06-20 DOI: 10.1111/1462-2920.16659
Bartłomiej Surmacz, Daniel Stec, Monika Prus-Frankowska, Mateusz Buczek, Łukasz Michalczyk, Piotr Łukasik
{"title":"Pinpointing the microbiota of tardigrades: What is really there?","authors":"Bartłomiej Surmacz,&nbsp;Daniel Stec,&nbsp;Monika Prus-Frankowska,&nbsp;Mateusz Buczek,&nbsp;Łukasz Michalczyk,&nbsp;Piotr Łukasik","doi":"10.1111/1462-2920.16659","DOIUrl":"10.1111/1462-2920.16659","url":null,"abstract":"<p>Microbiota are considered significant in the biology of tardigrades, yet their diversity and distribution remain largely unexplored. This is partly due to the methodological challenges associated with studying the microbiota of small organisms that inhabit microbe-rich environments. In our study, we characterized the microbiota of 31 species of cultured tardigrades using 16S rRNA amplicon sequencing. We employed various sample preparation strategies and multiple types of controls and estimated the number of microbes in samples using synthetic DNA spike-ins. We also reanalysed data from previous tardigrade microbiome studies. Our findings suggest that the microbial communities of cultured tardigrades are predominantly composed of bacterial genotypes originating from food, medium, or reagents. Despite numerous experiments, we found it challenging to identify strains that were enriched in certain tardigrades, which would have indicated likely symbiotic associations. Putative tardigrade-associated microbes rarely constituted more than 20% of the datasets, although some matched symbionts identified in other studies. We also uncovered serious contamination issues in previous tardigrade microbiome studies, casting doubt on some of their conclusions. We concluded that tardigrades are not universally dependent on specialized microbes. Our work underscores the need for rigorous safeguards in studies of the microbiota of microscopic organisms and serves as a cautionary tale for studies involving samples with low microbiome abundance.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 6","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141426560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
From ubiquity to specificity: The diverse functions of bacterial thioredoxin systems 从普遍性到特异性:细菌硫氧还蛋白系统的多种功能。
IF 4.3 2区 生物学
Environmental microbiology Pub Date : 2024-06-20 DOI: 10.1111/1462-2920.16668
Cyril Anjou, Aurélie Lotoux, Claire Morvan, Isabelle Martin-Verstraete
{"title":"From ubiquity to specificity: The diverse functions of bacterial thioredoxin systems","authors":"Cyril Anjou,&nbsp;Aurélie Lotoux,&nbsp;Claire Morvan,&nbsp;Isabelle Martin-Verstraete","doi":"10.1111/1462-2920.16668","DOIUrl":"10.1111/1462-2920.16668","url":null,"abstract":"<p>The thioredoxin (Trx) system, found universally, is responsible for the regeneration of reversibly oxidized protein thiols in living cells. This system is made up of a Trx and a Trx reductase, and it plays a central role in maintaining thiol-based redox homeostasis by reducing oxidized protein thiols, such as disulfide bonds in proteins. Some Trxs also possess a chaperone function that is independent of thiol-disulfide exchange, in addition to their thiol-disulfide reductase activity. These two activities of the Trx system are involved in numerous physiological processes in bacteria. This review describes the diverse physiological roles of the Trx system that have emerged throughout bacterial evolution. The Trx system is essential for responding to oxidative and nitrosative stress. Beyond this primary function, the Trx system also participates in redox regulation and signal transduction, and in controlling metabolism, motility, biofilm formation, and virulence. This range of functions has evolved alongside the diversity of bacterial lifestyles and their specific constraints. This evolution can be characterized by the multiplication of the systems and by the specialization of cofactors or targets to adapt to the constraints of atypical lifestyles, such as photosynthesis, insect endosymbiosis, or spore-forming bacteria.</p>","PeriodicalId":11898,"journal":{"name":"Environmental microbiology","volume":"26 6","pages":""},"PeriodicalIF":4.3,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1462-2920.16668","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141426557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quantitative proteomics reveals the Sox system's role in sulphur and arsenic metabolism of phototroph Halorhodospira halophila 定量蛋白质组学揭示了 Sox 系统在光营养体卤虫的硫和砷代谢中的作用。
IF 5.1 2区 生物学
Environmental microbiology Pub Date : 2024-06-19 DOI: 10.1111/1462-2920.16655
Giulia D'Ermo, Stéphane Audebert, Luc Camoin, Britta Planer-Friedrich, Corinne Casiot-Marouani, Sophie Delpoux, Régine Lebrun, Marianne Guiral, Barbara Schoepp-Cothenet
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