RSC Mechanochemistry最新文献

{"title":"Enhanced HP1α homodimer interaction via force-induced salt bridge formation: implications for chromatin crosslinking and phase separation†","authors":"Shingo Tsukamoto, Mohammad Khavani, Nya Domkam and Mohammad R. K. Mofrad","doi":"10.1039/D3MR00011G","DOIUrl":"https://doi.org/10.1039/D3MR00011G","url":null,"abstract":"<p >Recent studies have underscored the potential role of Heterochromatin Protein 1α (HP1α) in chromatin crosslinking, phase separation, and the orchestration of nuclear mechanics. One of the cornerstones of HP1α functionality lies in its homodimerization through the chromoshadow domain (CSD), which is crucial for these processes. Nevertheless, it has remained unknown how HP1α can foster condensations responding to mechanical force and induce phase separation in the mechanically unfavorable heterochromatin region. To elucidate the biophysical basis of HP1α, we used full atomistic molecular dynamics (MD) simulations, focusing on the CSD–CSD dimer of HP1α under a pulling force. Notably, force application resulted in a stronger, more stable interaction at the α-helix interface of the CSD–CSD. This enhanced interaction was attributed to a force-induced salt bridge formation on the α-helix interface, emerging from an angle alteration of a lysine residue that enables closer proximity to a glutamic acid residue on the paired CSD. This study reveals an intriguing facet of HP1α mechanics: its mechanical sensitivity, wherein dimerization strength is enhanced by mechanical force. The molecular dynamics of the CSD–CSD dimer under force provide novel insights into HP1α mechanics, contributing to our understanding of chromatin mechanics and phase separation.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00011g?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140114120","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Theory of flow-induced covalent polymer mechanochemistry in dilute solutions†","authors":"Etienne Rognin, Niamh Willis-Fox and Ronan Daly","doi":"10.1039/D3MR00009E","DOIUrl":"https://doi.org/10.1039/D3MR00009E","url":null,"abstract":"<p >Predicting polymer mechanochemistry in arbitrary flows is challenging due to the diversity of chain conformations, competition among stretched bonds, and flow heterogeneity. Here, we demonstrate that the vast diversity of polymer unravelling pathways must be accounted for, rather than considering an averaged chain conformation. We propose a model that describes both mechanophore activation and non-specific backbone scission, where the reaction rates depend solely on fluid kinematics. Validated with coarse-grained molecular dynamics simulations in complex flows, the model captures mechanochemistry onset, intact chain half-life, and non-specific scission.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00009e?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140114106","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Systematic investigation of the mechanocatalytic partial depolymerization of cellulose towards oligomeric glycans","authors":"Gregor Meyer, Dominique Lumpp, Anne-Kathrin Stulik, Dagmar Hoffmann and Marcus Rose","doi":"10.1039/D3MR00005B","DOIUrl":"https://doi.org/10.1039/D3MR00005B","url":null,"abstract":"<p >The selective depolymerization of cellulose is a major challenge and usually leads to the formation of monosaccharides as main products. Once depolymerized, various platform chemicals such as 5-hydroxymethylfurfural and furfural can be obtained from cellulose. Our work aims to convert cellulose selectively into oligomeric glycans as more valuable products compared to sugars, by using mechanocatalysis in a planetary ball mill. In this work, reaction parameters such as acid content, filling level, rotational speed and grinding duration were investigated systematically and optimized towards a maximum amount of soluble oligomeric species and a minimum of monosaccharides. The systematic investigation of the mechanocatalytic partial depolymerization resulted in a nearly full-soluble fraction containing oligomeric glycans.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-02-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00005b?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140114105","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"In situ investigation of controlled polymorphism in mechanochemistry at elevated temperature†","authors":"Kevin Linberg, Philipp C. Sander, Franziska Emmerling and Adam A. L. Michalchuk","doi":"10.1039/D3MR00019B","DOIUrl":"https://doi.org/10.1039/D3MR00019B","url":null,"abstract":"<p >Mechanochemistry routinely provides solid forms (polymorphs) that are difficult to obtain by conventional solution-based methods, making it an exciting tool for crystal engineering. However, we are far from identifying the full scope of mechanochemical strategies available to access new and potentially useful solid forms. Using the model organic cocrystal system of nicotinamide (NA) and pimelic acid (PA), we demonstrate with variable temperature ball milling that ball milling seemingly decreases the temperature needed to induce polymorph conversion. Whereas <strong>Form I</strong> of the NA:PA cocrystal transforms into <strong>Form II</strong> at 90 °C under equilibrium conditions, the same transition occurs as low as 65 °C during ball milling: a <em>ca</em> 25 °C reduction of the transition temperature. Our results indicate that mechanical energy provides a powerful control parameter to access new solid forms under more readily accessible conditions. We expect this ‘thermo-mechanical’ approach for driving polymorphic transformations to become an important tool for polymorph screening and manufacturing.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00019b?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140114109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Halogen-bonded cocrystals via resonant acoustic mixing†","authors":"Alireza Nari, Jeffrey S. Ovens and David L. Bryce","doi":"10.1039/D3MR00028A","DOIUrl":"https://doi.org/10.1039/D3MR00028A","url":null,"abstract":"<p >Resonant acoustic mixing is a relatively gentle mechanochemical technology that employs pressure waves to induce chemical and morphological transformations. We report here on the production of eleven halogen-bonded (XB) cocrystalline architectures <em>via</em> neat and liquid-assisted resonant acoustic mixing (RAM). Two strong iodinated XB donors, namely 1,4-diiodotetrafluorobenzene (<em>p</em>-DITFB, <strong>1</strong>) and 1,3,5-trifluoro-2,4,6-triiodobenzene (<em>sym</em>-TFTIB, <strong>2</strong>) each react with five XB donors, namely 2,3,5,6-tetramethylpyrazine (TMP, <strong>a</strong>), 4-dimethylaminopyridine (DMAP, <strong>b</strong>), 1,10-phenanthroline (<em>o</em>-Ph, <strong>c</strong>), 1,10-phenanthroline-5,6-dione (PheDON, <strong>d</strong>), and 4,5-diazafluoren-9-one (DIZFON, <strong>e</strong>) to form ten cocrystals. For these systems, it is shown that RAM is capable of producing the same products as are obtained <em>via</em> ball milling. Two novel cocrystals are obtained (of <strong>2d</strong> featuring bifurcated XBs, and <strong>2e</strong> featuring monofurcated XBs) and their single-crystal X-ray structures are reported. However, an eleventh stoichiomorphic cocrystal of <em>p</em>-DITFB and TMP is obtained exclusively <em>via</em> RAM, suggesting that the combination of RAM and milling approaches may afford a broader exploration of the polymorphic and stoichiomorphic landscape than the use of a single technique in isolation. All products are characterized <em>via</em> powder X-ray diffraction, and <small>¹³</small>C cross-polarization magic angle spinning (CP/MAS) and <small>¹⁹</small>F MAS NMR spectroscopy, providing further evidence for the phase purity of samples obtained from RAM experiments and for the degree of polymorphic control available when small volumes of liquid are employed in mechanochemical reactions. This work demonstrates the potential of RAM for the production of known and novel halogen-bonded cocrystalline assemblies, including polymorphic and stoichiomorphic structures.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00028a?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140114110","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Iron-free mechanochemical limonene inverse vulcanization†","authors":"Rima Tedjini, Raquel Viveiros, Teresa Casimiro and Vasco D. B. Bonifácio","doi":"10.1039/D3MR00002H","DOIUrl":"https://doi.org/10.1039/D3MR00002H","url":null,"abstract":"<p >An iron-free mechanochemical-assisted limonene inverse vulcanization is reported. The process makes use of only limonene and sulphur, industrial waste by-products, under mild conditions (<em>ca.</em> 40 °C) and short time (2 h) using a zirconium oxide reactor and a planetary ball mil. The obtained high value products are light yellow solids, readily soluble in chloroform, optically active oligosulfides, which are different from polysulfides reported under conventional conditions (<em>ca.</em> 185 °C), as confirmed by NMR spectroscopy and mass spectrometry. A general reaction mechanism is proposed, initiated by homolytic sulphur ring opening triggered by mechanical stress, and involving thiirane intermediates, <em>via</em> an addition–elimination reaction of sulphur to the limonene double bonds.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00002h?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140924787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Base-mediated trimerization of enones under solvent-free and ball-milling conditions†","authors":"Gang Shao, Pinhua Li, Zheng-Chun Yin, Jun-Shen Chen, Xu-Ling Xia and Guan-Wu Wang","doi":"10.1039/D3MR00010A","DOIUrl":"https://doi.org/10.1039/D3MR00010A","url":null,"abstract":"<p >An efficient mechanochemical trimerization of enones with KO<small>^<em>t</em></small>Bu as the base and water as the proton source under solvent-free and ambient conditions has been developed. This protocol provides novel, simple, rapid and scalable access to 1,3,5-triaryl-2,4-acyl-cyclohexanols, which exist as chair conformations with all bulky substituents located at equatorial positions. In addition, the formed cyclohexanol derivatives can be further dehydrated to afford the corresponding cyclohexene derivatives with β,γ-unsaturation. By changing the type or amount of the employed base, another type of stereoisomer, where the 4-acyl group is situated at the axial position, can be favorably generated as the major product.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00010a?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140924785","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Synthesis of α-ketothioamides with elemental sulfur under solvent-free conditions in a mixer mill†","authors":"Chandan Chittapriya Sahu, Sourav Biswas, Renè Hommelsheim and Carsten Bolm","doi":"10.1039/D3MR00025G","DOIUrl":"https://doi.org/10.1039/D3MR00025G","url":null,"abstract":"<p >A mechanochemical base-mediated synthesis of α-ketothioamide from readily available acetophenone derivatives is developed. The reaction is metal-free, solventless, and proceeds in a short reaction time. Importantly, the products differ from those formed under standard solution-based protocols.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00025g?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140114108","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Visualization of mechanochemical polymer-chain scission in double-network elastomers using a radical-transfer-type fluorescent molecular probe†","authors":"Takumi Yamamoto, Akira Takahashi and Hideyuki Otsuka","doi":"10.1039/D3MR00016H","DOIUrl":"https://doi.org/10.1039/D3MR00016H","url":null,"abstract":"<p >Double-network (DN) elastomers are renowned for combining stiffness and toughness. Their exceptional physical properties have garnered significant attention in recent years. However, the fracture phenomena in DN elastomers are much less understood than those in DN gels due to the limited scope of visualization methods. Here, we demonstrate the visualization of sacrificial bond cleavage in DN elastomers during elongation by adding a diarylacetonitrile (<strong>DAAN</strong>) derivative as a radical-transfer-type fluorescent molecular probe, which enables the visualization of polymer-chain scission without altering the mechanical properties. A tensile test of the DN elastomers that contain <strong>DAAN</strong> revealed that mechanoradicals are generated from the entire elongated region of the elastomers in the strain-hardening region. In contrast, DN gels generate mechanoradicals only at the necked region. This method is expected to accelerate the investigation of the fracture properties of various DN elastomers.</p>","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.rsc.org/en/content/articlepdf/2024/mr/d3mr00016h?page=search","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140114111","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Index","authors":"","doi":"10.1515/9783110608335-007","DOIUrl":"https://doi.org/10.1515/9783110608335-007","url":null,"abstract":"","PeriodicalId":101140,"journal":{"name":"RSC Mechanochemistry","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88609516","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}