{"title":"Intratumoral bacterium Enterocloster bolteae promotes hepatocellular carcinoma progression by directly binding tumor cells","authors":"Xuxin Ren, Gaomin Zheng, Yuyao Liu, Shangru Li, Shimao Liu, Yixi Wen, Ying Zhang, Yutong Zhao, Huayu Guan, Xinning Wang, Yuting Yang, Qiaoyi Chen, Youmei Kang, Yihang Xu, Liting Peng, Sui Peng, Lixia Xu, Jianting Long, Xuezhen Zeng, Shixian Hu, Ming Kuang","doi":"10.1016/j.chom.2026.01.020","DOIUrl":"https://doi.org/10.1016/j.chom.2026.01.020","url":null,"abstract":"The gut microbiota regulates systemic metabolism, inflammation, and immunity, with evidence linking microbiota translocation through the gut-liver axis to hepatocellular carcinoma (HCC) progression. However, the specific bacteria and underlying mechanisms driving tumor progression remain unexplored. We identify that <em>E. bolteae</em> is enriched in the feces of HCC patients and is associated with poor prognosis. <em>E. bolteae</em> disrupts intestinal barrier integrity, translocates to the liver, and promotes tumor proliferation. Mechanistically, we show that <em>E. bolteae</em>’s surface protein, penicillin-binding transpeptidase domain-containing protein (PbpT), directly interacts with the tumor cell receptor desmoglein 1 (DSG1), facilitating bacterial adhesion and attenuating DSG1’s tumor-suppressive function. Additionally, this interaction activates the mitogen-activated protein kinase (MAPK) signaling pathway to accelerate HCC progression. Blockade of PbpT abrogates <em>E. bolteae</em> attachment and its role in promoting HCC progression. These findings identify the PbpT-DSG1-MAPK axis as a critical driver of HCC progression. Targeting PbpT may be a promising therapeutic strategy for HCC.","PeriodicalId":9693,"journal":{"name":"Cell host & microbe","volume":"13 1","pages":""},"PeriodicalIF":30.3,"publicationDate":"2026-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147279378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Commensal enteric virome regulates intestinal carbohydrate digestion and absorption","authors":"Fengqing Lin, Lianglan Li, Yuanpeng He, Shujie Xu, Qiufen Mo, Wangsen Cao, Aikun Fu, Weiqin Li","doi":"10.1016/j.chom.2026.01.019","DOIUrl":"https://doi.org/10.1016/j.chom.2026.01.019","url":null,"abstract":"The enteric microbiome and nutrient sensing within the small intestine play critical roles in maintaining host metabolic homeostasis. Although various bacteria and some fungi have established functions in nutrient metabolism, the role of the enteric virome remains poorly understood. Here, we demonstrate that the enteric virome significantly influences carbohydrate digestion and absorption independently of the bacteriome. Furthermore, the virome elicits distinct responses across different intestinal cell types. Specifically, it activates programs for carbohydrate digestion and absorption in intestinal epithelial cells while simultaneously stimulating antigen-presenting cells―Th17 cells―to produce interleukin-22, a cytokine that curbs excessive carbohydrate uptake. The virome’s effect on carbohydrate digestion and absorption—whether suppressive or stimulatory—depends on the presence or absence of immune surveillance. This intricate interplay between metabolic and immune pathways establishes the enteric virome as a pivotal regulator of metabolism and reveals the virome’s intrinsic capacity to autonomously modulate vertebrate intestinal physiology.","PeriodicalId":9693,"journal":{"name":"Cell host & microbe","volume":"97 1","pages":""},"PeriodicalIF":30.3,"publicationDate":"2026-02-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147279377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rosalind J. Xu, Hao Zhang, Paolo Cadinu, Phillip B. Nicol, Uli S. Herrmann, Tyrone Lee, Ludwig Geistlinger, Rafael A. Irizarry, Jeffrey R. Moffitt
{"title":"An image-based transcriptomics atlas reveals the regional and microbiota-dependent molecular, cellular, and spatial structure of the murine gut","authors":"Rosalind J. Xu, Hao Zhang, Paolo Cadinu, Phillip B. Nicol, Uli S. Herrmann, Tyrone Lee, Ludwig Geistlinger, Rafael A. Irizarry, Jeffrey R. Moffitt","doi":"10.1016/j.chom.2026.01.018","DOIUrl":"https://doi.org/10.1016/j.chom.2026.01.018","url":null,"abstract":"The gastrointestinal environment is home to a massive diversity of diet-, host-, and microbiota-derived small molecules, collectively sensed by a remarkable variety of cells. To explore the cellular and spatial organization of sensation, we use MERFISH to profile receptor expression across 2.1 million cells in multiple regions of the murine gut under specific-pathogen-free (SPF) and germ-free (GF) conditions. This atlas reveals expected and previously unidentified cell types—including a candidate murine homolog of human BEST4⁺ enterocytes—demonstrates cell-type regional specialization, discovers extensive location-dependent spatial fine-tuning in mucosal cell expression, and suggests cell-type-specific mediators of the effects of microbiota-derived small molecules. Additionally, this atlas reveals that, aside from immune cell abundance, many aspects of the murine gut are host-intrinsic and modified only modestly in the absence of a microbiota. Collectively, this atlas provides a valuable resource for understanding the cellular and spatial organization underlying small-molecule sensation in the gut.","PeriodicalId":9693,"journal":{"name":"Cell host & microbe","volume":"37 1","pages":""},"PeriodicalIF":30.3,"publicationDate":"2026-02-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146223317","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Usman Hussain, Marine C. Cambon, Bridget Crampton, Sunitha Subramaniam, Anparasy Kajamuhan, Alejandra Ordoñez, Jim Downie, Jasen Finch, Manfred Beckmann, Nathan Brown, Amy Elison, Carrie Brady, Elena Vanguelova, Sandra Denman, James E. McDonald
{"title":"Microbial communities in semi-mature oak trees are resilient to drought, nutrient limitation, and pathogen challenge","authors":"Usman Hussain, Marine C. Cambon, Bridget Crampton, Sunitha Subramaniam, Anparasy Kajamuhan, Alejandra Ordoñez, Jim Downie, Jasen Finch, Manfred Beckmann, Nathan Brown, Amy Elison, Carrie Brady, Elena Vanguelova, Sandra Denman, James E. McDonald","doi":"10.1016/j.chom.2026.01.009","DOIUrl":"https://doi.org/10.1016/j.chom.2026.01.009","url":null,"abstract":"","PeriodicalId":9693,"journal":{"name":"Cell host & microbe","volume":"60 1","pages":""},"PeriodicalIF":30.3,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146160732","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Weijie Wen, Runping Su, Yunyun Liu, Zhiyang Feng, Yancai Li, Jieli Li, Ziyu Huang, Fen Zhang, Shanshan Gao, Yingfei Ma, Qinghua Zhou, Emad M. El-Omar, Jeremy J. Barr, Tao Zuo
{"title":"Gut DNA virome enterotype dictates inflammation heterogeneity through tuning the phage-bacteria-sphingosine-intestine axis in Crohn's disease","authors":"Weijie Wen, Runping Su, Yunyun Liu, Zhiyang Feng, Yancai Li, Jieli Li, Ziyu Huang, Fen Zhang, Shanshan Gao, Yingfei Ma, Qinghua Zhou, Emad M. El-Omar, Jeremy J. Barr, Tao Zuo","doi":"10.1016/j.chom.2026.01.016","DOIUrl":"https://doi.org/10.1016/j.chom.2026.01.016","url":null,"abstract":"The human gut harbors a diverse virome, believed to play a crucial role in maintaining intestinal homeostasis. However, the magnitude of heterogeneity of the gut mucosal virome, and how it differentially regulates host inflammation phenotypes, such as those observed in Crohn’s disease (CD), remains unclear. Here, we identify two mucosal DNA virome enterotypes (E1 and E2) in humans, with E2 subjects exhibiting higher virome diversity and nuanced bacteriophage-bacteria correlations. Moreover, E2-enterotyped CD patients exhibited higher <ce:italic>Wulfhauvirus</ce:italic> abundance than healthy controls. The E2 virome is causally more proinflammatory in inducing intestinal inflammation in mice. Mechanistically, the novel E2-virome-enriched phage øBTZT001P (belonging to <ce:italic>Wulfhauvirus</ce:italic>) lysogenically infects <ce:italic>Bacteroides thetaiotaomicron</ce:italic>, increasing sphingosine production. Downstream, sphingosine suppresses the commensal bacterium <ce:italic>Blautia obeum</ce:italic> in the gut, leading to worsened intestinal inflammation. Our findings reveal that configurational differences in the gut virome may dictate disease outcome through a phage-bacteria-metabolite-intestine axis, highlighting the importance of gut phage-bacteria crosstalk in health.","PeriodicalId":9693,"journal":{"name":"Cell host & microbe","volume":"16 1","pages":""},"PeriodicalIF":30.3,"publicationDate":"2026-02-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146146660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}