Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention最新文献

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Flow-based Geometric Interpolation of Fiber Orientation Distribution Functions. 基于流动的纤维方向分布函数几何插值。
Xinyu Nie, Yonggang Shi
{"title":"Flow-based Geometric Interpolation of Fiber Orientation Distribution Functions.","authors":"Xinyu Nie, Yonggang Shi","doi":"10.1007/978-3-031-43993-3_5","DOIUrl":"10.1007/978-3-031-43993-3_5","url":null,"abstract":"<p><p>The fiber orientation distribution function (FOD) is an advanced model for high angular resolution diffusion MRI representing complex fiber geometry. However, the complicated mathematical structures of the FOD function pose challenges for FOD image processing tasks such as interpolation, which plays a critical role in the propagation of fiber tracts in tractography. In FOD-based tractography, linear interpolation is commonly used for numerical efficiency, but it is prone to generate false artificial information, leading to anatomically incorrect fiber tracts. To overcome this difficulty, we propose a flowbased and geometrically consistent interpolation framework that considers peak-wise rotations of FODs within the neighborhood of each location. Our method decomposes a FOD function into multiple components and uses a smooth vector field to model the flows of each peak in its neighborhood. To generate the interpolated result along the flow of each vector field, we develop a closed-form and efficient method to rotate FOD peaks in neighboring voxels and realize geometrically consistent interpolation of FOD components. By combining the interpolation results from each peak, we obtain the final interpolation of FODs. Experimental results on Human Connectome Project (HCP) data demonstrate that our method produces anatomically more meaningful FOD interpolations and significantly enhances tractography performance.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14227 ","pages":"46-55"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10978007/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140320351","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Foundation Ark: Accruing and Reusing Knowledge for Superior and Robust Performance. 基础方舟:积累和重复使用知识,实现卓越而稳健的绩效。
DongAo Ma, Jiaxuan Pang, Michael B Gotway, Jianming Liang
{"title":"Foundation Ark: Accruing and Reusing Knowledge for Superior and Robust Performance.","authors":"DongAo Ma, Jiaxuan Pang, Michael B Gotway, Jianming Liang","doi":"10.1007/978-3-031-43907-0_62","DOIUrl":"10.1007/978-3-031-43907-0_62","url":null,"abstract":"<p><p>Deep learning nowadays offers expert-level and sometimes even super-expert-level performance, but achieving such performance demands massive annotated data for training (e.g., Google's <i>proprietary</i> CXR Foundation Model (CXR-FM) was trained on 821,544 <i>labeled</i> and mostly <i>private</i> chest X-rays (CXRs)). <i>Numerous</i> datasets are <i>publicly</i> available in medical imaging but individually <i>small</i> and <i>heterogeneous</i> in expert labels. We envision a powerful and robust foundation model that can be trained by aggregating numerous small public datasets. To realize this vision, we have developed <b>Ark</b>, a framework that <b>a</b>ccrues and <b>r</b>euses <b>k</b>nowledge from <b>heterogeneous</b> expert annotations in various datasets. As a proof of concept, we have trained two Ark models on 335,484 and 704,363 CXRs, respectively, by merging several datasets including ChestX-ray14, CheXpert, MIMIC-II, and VinDr-CXR, evaluated them on a wide range of imaging tasks covering both classification and segmentation via fine-tuning, linear-probing, and gender-bias analysis, and demonstrated our Ark's superior and robust performance over the state-of-the-art (SOTA) fully/self-supervised baselines and Google's proprietary CXR-FM. This enhanced performance is attributed to our simple yet powerful observation that aggregating numerous public datasets diversifies patient populations and accrues knowledge from diverse experts, yielding unprecedented performance yet saving annotation cost. With all codes and pretrained models released at GitHub.com/JLiangLab/Ark, we hope that Ark exerts an important impact on open science, as accruing and reusing knowledge from expert annotations in public datasets can potentially surpass the performance of proprietary models trained on unusually large data, inspiring many more researchers worldwide to share codes and datasets to build open foundation models, accelerate open science, and democratize deep learning for medical imaging.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14220 ","pages":"651-662"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11095392/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140946796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An Explainable Geometric-Weighted Graph Attention Network for Identifying Functional Networks Associated with Gait Impairment. 一个可解释的几何加权图注意网络识别与步态障碍相关的功能网络。
Favour Nerrise, Qingyu Zhao, Kathleen L Poston, Kilian M Pohl, Ehsan Adeli
{"title":"An Explainable Geometric-Weighted Graph Attention Network for Identifying Functional Networks Associated with Gait Impairment.","authors":"Favour Nerrise, Qingyu Zhao, Kathleen L Poston, Kilian M Pohl, Ehsan Adeli","doi":"10.1007/978-3-031-43895-0_68","DOIUrl":"10.1007/978-3-031-43895-0_68","url":null,"abstract":"<p><p>One of the hallmark symptoms of Parkinson's Disease (PD) is the progressive loss of postural reflexes, which eventually leads to gait difficulties and balance problems. Identifying disruptions in brain function associated with gait impairment could be crucial in better understanding PD motor progression, thus advancing the development of more effective and personalized therapeutics. In this work, we present an explainable, geometric, weighted-graph attention neural network (<b>xGW-GAT</b>) to identify functional networks predictive of the progression of gait difficulties in individuals with PD. <b>xGW-GAT</b> predicts the multi-class gait impairment on the MDS-Unified PD Rating Scale (MDS-UPDRS). Our computational- and data-efficient model represents functional connectomes as symmetric positive definite (SPD) matrices on a Riemannian manifold to explicitly encode pairwise interactions of entire connectomes, based on which we learn an attention mask yielding individual- and group-level explainability. Applied to our resting-state functional MRI (rs-fMRI) dataset of individuals with PD, <b>xGW-GAT</b> identifies functional connectivity patterns associated with gait impairment in PD and offers interpretable explanations of functional subnetworks associated with motor impairment. Our model successfully outperforms several existing methods while simultaneously revealing clinically-relevant connectivity patterns. The source code is available at https://github.com/favour-nerrise/xGW-GAT.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14221 ","pages":"723-733"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10657737/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138049118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Towards Accurate Microstructure Estimation via 3D Hybrid Graph Transformer. 通过三维混合图变换器实现精确的微观结构估算
Junqing Yang, Haotian Jiang, Tewodros Tassew, Peng Sun, Jiquan Ma, Yong Xia, Pew-Thian Yap, Geng Chen
{"title":"Towards Accurate Microstructure Estimation via 3D Hybrid Graph Transformer.","authors":"Junqing Yang, Haotian Jiang, Tewodros Tassew, Peng Sun, Jiquan Ma, Yong Xia, Pew-Thian Yap, Geng Chen","doi":"10.1007/978-3-031-43993-3_3","DOIUrl":"10.1007/978-3-031-43993-3_3","url":null,"abstract":"<p><p>Deep learning has drawn increasing attention in microstructure estimation with undersampled diffusion MRI (dMRI) data. A representative method is the hybrid graph transformer (HGT), which achieves promising performance by integrating <math><mi>q</mi></math> -space graph learning and <math><mi>x</mi></math> -space transformer learning into a unified framework. However, this method overlooks the 3D spatial information as it relies on training with 2D slices. To address this limitation, we propose 3D hybrid graph transformer (3D-HGT), an advanced microstructure estimation model capable of making full use of 3D spatial information and angular information. To tackle the large computation burden associated with 3D <math><mi>x</mi></math> -space learning, we propose an efficient <math><mi>q</mi></math> -space learning model based on simplified graph neural networks. Furthermore, we propose a 3D <math><mi>x</mi></math> -space learning module based on the transformer. Extensive experiments on data from the human connectome project show that our 3D-HGT outperforms state-of-the-art methods, including HGT, in both quantitative and qualitative evaluations.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14227 ","pages":"25-34"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11361334/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142116657","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dynamic Functional Connectome Harmonics. 动态功能连接组谐波。
Hoyt Patrick Taylor, Pew-Thian Yap
{"title":"Dynamic Functional Connectome Harmonics.","authors":"Hoyt Patrick Taylor, Pew-Thian Yap","doi":"10.1007/978-3-031-43993-3_26","DOIUrl":"10.1007/978-3-031-43993-3_26","url":null,"abstract":"<p><p>Functional connectivity (FC) \"gradients\" enable investigation of connection topography in relation to cognitive hierarchy, and yield the primary axes along which FC is organized. In this work, we employ a variant of the \"gradient\" approach wherein we solve for the normal modes of FC, yielding functional connectome harmonics. Until now, research in this vein has only considered static FC, neglecting the possibility that the principal axes of FC may depend on the timescale at which they are computed. Recent work suggests that momentary activation patterns, or brain states, mediate the dominant components of functional connectivity, suggesting that the principal axes may be invariant to change in timescale. In light of this, we compute functional connectome harmonics using time windows of varying lengths and demonstrate that they are stable across timescales. Our connectome harmonics correspond to meaningful brain states. The activation strength of the brain states, as well as their inter-relationships, are found to be reproducible for individuals. Further, we utilize our time-varying functional connectome harmonics to formulate a simple and elegant method for computing cortical flexibility at vertex resolution and demonstrate qualitative similarity between flexibility maps from our method and a method standard in the literature.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14227 ","pages":"268-276"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11460769/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142396540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SurfFlow: A Flow-Based Approach for Rapid and Accurate Cortical Surface Reconstruction from Infant Brain MRI. SurfFlow:一种基于流的方法,用于从婴儿脑磁共振成像中快速、准确地重建皮质表面。
Xiaoyang Chen, Junjie Zhao, Siyuan Liu, Sahar Ahmad, Pew-Thian Yap
{"title":"SurfFlow: A Flow-Based Approach for Rapid and Accurate Cortical Surface Reconstruction from Infant Brain MRI.","authors":"Xiaoyang Chen, Junjie Zhao, Siyuan Liu, Sahar Ahmad, Pew-Thian Yap","doi":"10.1007/978-3-031-43993-3_37","DOIUrl":"10.1007/978-3-031-43993-3_37","url":null,"abstract":"<p><p>The infant brain undergoes rapid changes in volume, shape, and structural organization during the first postnatal year. Accurate cortical surface reconstruction (CSR) is essential for understanding rapid changes in cortical morphometry during early brain development. However, existing CSR methods, designed for adult brain MRI, fall short in reconstructing cortical surfaces from infant MRI, owing to the poor tissue contrasts, partial volume effects, and rapid changes in cortical folding patterns. Here, we introduce an infant-centric CSR method in light of these challenges. Our method, <i>SurfFlow</i>, utilizes three seamlessly connected deformation blocks to sequentially deform an initial template mesh to target cortical surfaces. Remarkably, our method can rapidly reconstruct a high-resolution cortical surface mesh with 360k vertices in approximately one second. Performance evaluation based on an MRI dataset of infants 0 to 12 months of age indicates that SurfFlow significantly reduces geometric errors and substantially improves mesh regularity compared with state-of-the-art deep learning approaches.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14227 ","pages":"380-388"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11460795/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142396541","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LSOR: Longitudinally-Consistent Self-Organized Representation Learning. 纵向一致自组织表征学习。
Jiahong Ouyang, Qingyu Zhao, Ehsan Adeli, Wei Peng, Greg Zaharchuk, Kilian M Pohl
{"title":"LSOR: Longitudinally-Consistent Self-Organized Representation Learning.","authors":"Jiahong Ouyang, Qingyu Zhao, Ehsan Adeli, Wei Peng, Greg Zaharchuk, Kilian M Pohl","doi":"10.1007/978-3-031-43907-0_27","DOIUrl":"10.1007/978-3-031-43907-0_27","url":null,"abstract":"<p><p>Interpretability is a key issue when applying deep learning models to longitudinal brain MRIs. One way to address this issue is by visualizing the high-dimensional latent spaces generated by deep learning via self-organizing maps (SOM). SOM separates the latent space into clusters and then maps the cluster centers to a discrete (typically 2D) grid preserving the high-dimensional relationship between clusters. However, learning SOM in a high-dimensional latent space tends to be unstable, especially in a self-supervision setting. Furthermore, the learned SOM grid does not necessarily capture clinically interesting information, such as brain age. To resolve these issues, we propose the first self-supervised SOM approach that derives a high-dimensional, interpretable representation stratified by brain age solely based on longitudinal brain MRIs (i.e., without demographic or cognitive information). Called <b>L</b>ongitudinally-consistent <b>S</b>elf-<b>O</b>rganized <b>R</b>epresentation learning (LSOR), the method is stable during training as it relies on soft clustering (vs. the hard cluster assignments used by existing SOM). Furthermore, our approach generates a latent space stratified according to brain age by aligning trajectories inferred from longitudinal MRIs to the reference vector associated with the corresponding SOM cluster. When applied to longitudinal MRIs of the Alzheimer's Disease Neuroimaging Initiative (ADNI, <math><mi>N</mi><mspace></mspace><mo>=</mo><mspace></mspace><mn>632</mn></math>), LSOR generates an interpretable latent space and achieves comparable or higher accuracy than the state-of-the-art representations with respect to the downstream tasks of classification (static vs. progressive mild cognitive impairment) and regression (determining ADAS-Cog score of all subjects). The code is available at https://github.com/ouyangjiahong/longitudinal-som-single-modality.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14220 ","pages":"279-289"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10642576/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"92158078","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pelphix: Surgical Phase Recognition from X-ray Images in Percutaneous Pelvic Fixation. Pelphix:从 X 光图像识别经皮骨盆固定术中的手术期。
Benjamin D Killeen, Han Zhang, Jan Mangulabnan, Mehran Armand, Russell H Taylor, Greg Osgood, Mathias Unberath
{"title":"Pelphix: Surgical Phase Recognition from X-ray Images in Percutaneous Pelvic Fixation.","authors":"Benjamin D Killeen, Han Zhang, Jan Mangulabnan, Mehran Armand, Russell H Taylor, Greg Osgood, Mathias Unberath","doi":"10.1007/978-3-031-43996-4_13","DOIUrl":"https://doi.org/10.1007/978-3-031-43996-4_13","url":null,"abstract":"<p><p>Surgical phase recognition (SPR) is a crucial element in the digital transformation of the modern operating theater. While SPR based on video sources is well-established, incorporation of interventional X-ray sequences has not yet been explored. This paper presents Pelphix, a first approach to SPR for X-ray-guided percutaneous pelvic fracture fixation, which models the procedure at four levels of granularity - corridor, activity, view, and frame value - simulating the pelvic fracture fixation workflow as a Markov process to provide fully annotated training data. Using added supervision from detection of bony corridors, tools, and anatomy, we learn image representations that are fed into a transformer model to regress surgical phases at the four granularity levels. Our approach demonstrates the feasibility of X-ray-based SPR, achieving an average accuracy of 99.2% on simulated sequences and 71.7% in cadaver across all granularity levels, with up to 84% accuracy for the target corridor in real data. This work constitutes the first step toward SPR for the X-ray domain, establishing an approach to categorizing phases in X-ray-guided surgery, simulating realistic image sequences to enable machine learning model development, and demonstrating that this approach is feasible for the analysis of real procedures. As X-ray-based SPR continues to mature, it will benefit procedures in orthopedic surgery, angiography, and interventional radiology by equipping intelligent surgical systems with situational awareness in the operating room.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14228 ","pages":"133-143"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11016332/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140862109","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CTFlow: Mitigating Effects of Computed Tomography Acquisition and Reconstruction with Normalizing Flows. CTFlow:利用归一化流量减轻计算机断层扫描采集和重建的影响。
Leihao Wei, Anil Yadav, William Hsu
{"title":"CTFlow: Mitigating Effects of Computed Tomography Acquisition and Reconstruction with Normalizing Flows.","authors":"Leihao Wei, Anil Yadav, William Hsu","doi":"10.1007/978-3-031-43990-2_39","DOIUrl":"10.1007/978-3-031-43990-2_39","url":null,"abstract":"<p><p>Mitigating the effects of image appearance due to variations in computed tomography (CT) acquisition and reconstruction parameters is a challenging inverse problem. We present CTFlow, a normalizing flows-based method for harmonizing CT scans acquired and reconstructed using different doses and kernels to a target scan. Unlike existing state-of-the-art image harmonization approaches that only generate a single output, flow-based methods learn the explicit conditional density and output the entire spectrum of plausible reconstruction, reflecting the underlying uncertainty of the problem. We demonstrate how normalizing flows reduces variability in image quality and the performance of a machine learning algorithm for lung nodule detection. We evaluate the performance of CTFlow by 1) comparing it with other techniques on a denoising task using the AAPM-Mayo Clinical Low-Dose CT Grand Challenge dataset, and 2) demonstrating consistency in nodule detection performance across 186 real-world low-dose CT chest scans acquired at our institution. CTFlow performs better in the denoising task for both peak signal-to-noise ratio and perceptual quality metrics. Moreover, CTFlow produces more consistent predictions across all dose and kernel conditions than generative adversarial network (GAN)-based image harmonization on a lung nodule detection task. The code is available at https://github.com/hsu-lab/ctflow.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14226 ","pages":"413-422"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11086056/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140913633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Implicit Anatomical Rendering for Medical Image Segmentation with Stochastic Experts. 利用随机专家为医学图像分割进行隐式解剖渲染
Chenyu You, Weicheng Dai, Yifei Min, Lawrence Staib, James S Duncan
{"title":"Implicit Anatomical Rendering for Medical Image Segmentation with Stochastic Experts.","authors":"Chenyu You, Weicheng Dai, Yifei Min, Lawrence Staib, James S Duncan","doi":"10.1007/978-3-031-43898-1_54","DOIUrl":"10.1007/978-3-031-43898-1_54","url":null,"abstract":"<p><p>Integrating high-level semantically correlated contents and low-level anatomical features is of central importance in medical image segmentation. Towards this end, recent deep learning-based medical segmentation methods have shown great promise in better modeling such information. However, convolution operators for medical segmentation typically operate on regular grids, which inherently blur the high-frequency regions, <i>i.e</i>., boundary regions. In this work, we propose MORSE, a generic implicit neural rendering framework designed at an anatomical level to assist learning in medical image segmentation. Our method is motivated by the fact that implicit neural representation has been shown to be more effective in fitting complex signals and solving computer graphics problems than discrete grid-based representation. The core of our approach is to formulate medical image segmentation as a rendering problem in an end-to-end manner. Specifically, we continuously align the coarse segmentation prediction with the ambiguous coordinate-based point representations and aggregate these features to adaptively refine the boundary region. To parallelly optimize multi-scale pixel-level features, we leverage the idea from Mixture-of-Expert (MoE) to design and train our MORSE with a stochastic gating mechanism. Our experiments demonstrate that MORSE can work well with different medical segmentation backbones, consistently achieving competitive performance improvements in both 2D and 3D supervised medical segmentation methods. We also theoretically analyze the superiority of MORSE.</p>","PeriodicalId":94280,"journal":{"name":"Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention","volume":"14222 ","pages":"561-571"},"PeriodicalIF":0.0,"publicationDate":"2023-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11151725/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141262863","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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