BioEssaysPub Date : 2026-09-29DOI: 10.1002/bies.70189
David Njus, Markus Friedrich
{"title":"Catecholamine Chemistry Dictated the Divergence of Melanization and Signaling Processes During Animal Evolution","authors":"David Njus, Markus Friedrich","doi":"10.1002/bies.70189","DOIUrl":"https://doi.org/10.1002/bies.70189","url":null,"abstract":"<div>\u0000 \u0000 <p>Advanced vertebrates (gnathostomes) differ from the rest of the animal tree of life by their use of an elaborate endoskeleton and the deployment of the catecholamine neurotransmitters epinephrine and norepinephrine. Here we propose that the coordinated origins of these seemingly unrelated signature traits are explained by the varied propensities of different catecholamines to oxidize and polymerize into the light absorbent and structurally stable biopolymer melanin. Compared to dopamine and its precursor DOPA (L-3,4-dihydroxyphenylalanine), norepinephrine and epinephrine are much less susceptible to polymerization. The latter were therefore likely adaptively favored for peripheral signaling in vertebrates. In addition to the chemical evidence, we explore how peripheral nervous system development correlated with changes in gene family content, immune response organization, and internal support structure elaboration during early vertebrate evolution.</p>\u0000 </div>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 10","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149072558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BioEssaysPub Date : 2026-09-29DOI: 10.1002/bies.70186
Byungwook Kim, Selena S. Wang, Justin R. Kim, Jungsu Kim
{"title":"Targeting Microglial Transcriptional Reprogramming as a Therapy Strategy for Alzheimer's Disease","authors":"Byungwook Kim, Selena S. Wang, Justin R. Kim, Jungsu Kim","doi":"10.1002/bies.70186","DOIUrl":"https://doi.org/10.1002/bies.70186","url":null,"abstract":"<p>Recent human genetic studies revealed that Alzheimer's disease risk loci are enriched in genes expressed in myeloid cells, including microglia, the brain's resident immune cells. Notably, several risk-associated genes, such as <i>SPI1</i> and <i>MEF2C</i>, encode transcription factors (TFs) that control critical microglial functions, including phagocytosis, inflammatory responses, and neurotrophic support.</p><p>The objective of this article is to review the recent progress in understanding these TFs and evaluate them as therapeutic targets rather than as markers of microglial state. We examine the genetic evidence implicating PU.1, MEF2C, IRF8, and BHLHE40/41, the in vivo evidence from animal models, the transcriptional network these factors regulate, and the barriers to clinical translation.</p><p>Because these TFs orchestrate broad gene expression networks by regulating multiple disease-relevant downstream partners, targeting their expression level or activity could achieve greater therapeutic efficacy than targeting single genes, provided that the dose and disease stage of modulation are carefully considered.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 10","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bies.70186","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149072506","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BioEssaysPub Date : 2026-09-28DOI: 10.1002/bies.70184
Frederic Angelier, David Costantini, Cecilia Houdelier, Valeria Marasco
{"title":"When Does Stress Build Strength? Linking Stress Physiology to Resilience in the Age of Rapid Environmental Change","authors":"Frederic Angelier, David Costantini, Cecilia Houdelier, Valeria Marasco","doi":"10.1002/bies.70184","DOIUrl":"10.1002/bies.70184","url":null,"abstract":"<p>The rapid, unprecedented rate of worldwide pressures organisms are currently exposed to, from climate instability to pollution, urges to expand research focus toward stress resilience. Here, our main goal is to call for an integrative effort to understand conserved processes underlying whole-organism stress resilience with a specific focus on the following questions: (i) How can stress resilience be defined? (ii) What are its main underlying metrics at the whole-organism level (focus on glucocorticoid hormones, oxidative stress, neural and behavioral metrics)? (iii) What is the role of stress inoculation- and hormetic-like effects to build resilience throughout an organism´s lifespan? By building up on emerging knowledge spanning from behavioral biology and ecophysiology to biomedicine, we explore conserved mechanisms of stress resilience that are relevant for both environmental and human health. Finally, we encourage for more research on wildlife study systems, which experience natural and cumulative stressors across ecologically relevant settings, and can thus help uncover functional mechanisms of stress resilience across vertebrates, including humans.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 9","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13617511/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149069200","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BioEssaysPub Date : 2026-09-18DOI: 10.1002/bies.70182
Dagyeong Yang, Elissa P. Lei
{"title":"Transcription and Three-Dimensional Genome Organization: Cause, Consequence, or Coordination?","authors":"Dagyeong Yang, Elissa P. Lei","doi":"10.1002/bies.70182","DOIUrl":"10.1002/bies.70182","url":null,"abstract":"<p>Transcription and three-dimensional (3D) genome organization are closely coupled, but their precise relationship remains unresolved. Evidence from perturbation, imaging, and modeling studies suggests that transcription is not strictly required for the establishment of large-scale genome features such as compartments and topologically associating domains (TADs). Instead, transcription seems to exert more prominent effects at finer spatial scales, where it influences enhancer–promoter interactions, local chromatin loops, and microcompartments. RNA molecules, polymerase-driven supercoiling, and R-loop formation may further modulate chromatin organization at the gene level. At the same time, many architectural proteins and transcriptional regulators operate with functional overlap, complicating efforts to disentangle cause and consequence. Together, these observations suggest that genome architecture provides a relatively stable framework for regulated gene expression, while transcription and associated factors refine chromatin organization in a context-dependent manner. Understanding how these processes are integrated will require systematic, multi-scale perturbations across different biological and biochemical systems.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 9","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bies.70182","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148988158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BioEssaysPub Date : 2026-09-17DOI: 10.1002/bies.70183
Yao-Peng Xue, Ruihao Li, Vincent J. Gillespie, Zhewen Yang, Wai Kwan Tang, Niraj H. Tolia, Timothy A. Wencewicz, Gautam Dantas
{"title":"Evolution, Mechanisms, and Therapeutic Implications of Mobile Tetracycline Destructases","authors":"Yao-Peng Xue, Ruihao Li, Vincent J. Gillespie, Zhewen Yang, Wai Kwan Tang, Niraj H. Tolia, Timothy A. Wencewicz, Gautam Dantas","doi":"10.1002/bies.70183","DOIUrl":"10.1002/bies.70183","url":null,"abstract":"<div>\u0000 \u0000 <p>Tetracycline destructases (TDases) pose an emerging global threat by enzymatically inactivating all generations of tetracycline (Tet) antibiotics, including last-resort agents such as tigecycline. Despite their recent identification, TDases have rapidly disseminated worldwide, largely driven by mobile genetic elements and environmental reservoirs. This review synthesizes current knowledge on TDase genomics, structural and catalytic mechanisms, ecological niches, and clinical impacts. We detail the mechanistic distinctions between type 1 and type 2 TDases, emphasizing their divergent structural configurations and substrate specificity profiles. Additionally, we examine strategies for therapeutic intervention, highlighting progress in structure-guided inhibitor development. Key gaps remain in understanding ancestral reservoirs, evolutionary trajectories, and effective surveillance strategies. Addressing these areas through integrative evolutionary, biochemical, and ecological studies is critical for mitigating the clinical spread and therapeutic impact of TDases globally.</p>\u0000 </div>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 9","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148988082","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BioEssaysPub Date : 2026-09-11DOI: 10.1002/bies.70178
Ryo Tomooka, Jun Kohyama
{"title":"ATRX Condensates as Candidate Organizers of Enhancer-Centered Nuclear Microenvironments in Neural Progenitors","authors":"Ryo Tomooka, Jun Kohyama","doi":"10.1002/bies.70178","DOIUrl":"https://doi.org/10.1002/bies.70178","url":null,"abstract":"<div>\u0000 \u0000 <p>Neural progenitor cells (NPCs) must preserve lineage identity while remaining responsive to developmental cues. Here, we discuss the hypothesis that ATRX condensates help organize enhancer-centered nuclear microenvironments in NPCs. ATRX has long been studied in heterochromatin maintenance, histone variant deposition, and chromatin remodeling; earlier work has also shown that ATRX can occupy euchromatic and active regulatory regions and contribute to transcriptional regulation. Recent evidence in human NPCs indicates that ATRX forms nuclear puncta with condensate-like properties, associates with neurogenic enhancer-rich regions, and incorporates regulatory factors such as CHD7 and p300. Perturbation of ATRX condensate formation is associated with changes in enhancer-associated ATRX occupancy, neural gene-expression programs, and neuroepithelial organization, suggesting a regulatory mode that may complement canonical heterochromatin-associated functions. We propose a dual-mode model in which folded domains contribute to chromatin anchoring at repressive regions, whereas intrinsically disordered regions support condensate-associated organization at active developmental enhancers. We emphasize that whether ATRX condensates activate enhancers <i>de novo</i>, stabilize pre-existing enhancer states, buffer transcriptional variability, or primarily organize cofactor localization remains unresolved. We also discuss limitations of the current evidence and outline acute, locus-specific experiments needed to test the model.</p>\u0000 </div>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 9","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148943191","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BioEssaysPub Date : 2026-09-09DOI: 10.1002/bies.70181
Bhavya Blaze, Ahmad A. Cluntun
{"title":"Lactate Metabolism: Separating Correlation From Causation","authors":"Bhavya Blaze, Ahmad A. Cluntun","doi":"10.1002/bies.70181","DOIUrl":"10.1002/bies.70181","url":null,"abstract":"<p>Lactate is among the most frequently measured metabolites in physiology and medicine, yet it remains one of the most persistently misunderstood. Long regarded as a metabolic waste product, a marker of anaerobic metabolism, or a direct cause of acidosis and fatigue, lactate remains burdened by misconceptions that obscure its true biological roles. Recent advances in metabolic flux analysis, isotope tracing, hyperpolarized magnetic resonance spectroscopy, and cellular imaging have revised this view and established lactate as a central intermediary in energy metabolism, redox homeostasis, and interorgan metabolic communication. Here, we re-examine common myths surrounding lactate biology and clarify the distinction between correlation and causation in its interpretation. By reframing lactate as a dynamic indicator and, in some contexts, a regulator, of metabolic state rather than a toxic by-product, this review improves experimental reasoning and clinical interpretation across diverse physiological and pathological contexts.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 9","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bies.70181","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148918767","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
BioEssaysPub Date : 2026-09-09DOI: 10.1002/bies.70180
Jie Yang, Bruce Bowerman
{"title":"The Small but Versatile Cyclin-Dependent Kinase Subunit CKS","authors":"Jie Yang, Bruce Bowerman","doi":"10.1002/bies.70180","DOIUrl":"10.1002/bies.70180","url":null,"abstract":"<p>The cyclin-dependent kinase subunit (CKS) remains the least well-understood component of the tripartite cyclin-dependent kinase (CDK) complexes that specify the proper sequence of events required to duplicate and segregate genomes during eukaryotic cell division. Our recent investigation of CKS requirements during <i>Caenorhabditis elegans</i> oocyte meiosis I and II documents an essential role for CKS in the execution of anaphase B and expands the known range of CKS influence on cell cycle regulation to a third class of E3 ligases. Our findings also further document how <i>C. elegans</i> oocytes use very different mechanisms to progress through these two sequential cell divisions that ultimately produce a haploid oocyte. In this Think Again article, we discuss our findings as they relate to previous studies of CKS in different model systems.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":"48 9","pages":""},"PeriodicalIF":3.3,"publicationDate":"2026-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bies.70180","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148918804","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}