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Can stable introns and noncoding RNAs be harnessed to improve health through activation of mitohormesis? 能否利用稳定的内含子和非编码 RNA,通过激活有丝分裂来改善健康?
IF 4 3区 生物学
BioEssays Pub Date : 2024-09-20 DOI: 10.1002/bies.202400143
Seow Neng Chan, Jun Wei Pek
{"title":"Can stable introns and noncoding RNAs be harnessed to improve health through activation of mitohormesis?","authors":"Seow Neng Chan, Jun Wei Pek","doi":"10.1002/bies.202400143","DOIUrl":"https://doi.org/10.1002/bies.202400143","url":null,"abstract":"Ever since their introduction a decade ago, stable introns, a type of noncoding (nc)RNAs, are found to be key players in different important cellular processes acting through regulation of gene expression and feedback loops to maintain cellular homeostasis. Despite being commonly regarded as useless byproducts, recent studies in yeast suggested that stable introns are essential for cell survivability under starvation. In <i>Drosophila</i>, we found that a stable intron, sisR-1, has a direct effect in regulating mitochondrial dynamics during short-term fasting and subsequently improved overall oocyte quality. We speculated that the beneficial effects implicated by sisR-1 is through the activation of mitohormesis, an interesting phenomenon in mitochondrial biology. Mitohormesis is suggested to improve health span and lifespan of cells and organisms, but the involvement of ncRNAs is not well-documented. Here, we discuss the potential role of sisR-1 and other ncRNAs in activating mitohormesis and the possible applications in improving cellular and organismal health.","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142268017","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Linking secretion and cytoskeleton in immunity– a case for Arabidopsis TGNap1 将免疫中的分泌和细胞骨架联系起来--拟南芥 TGNap1 的一个案例
IF 4 3区 生物学
BioEssays Pub Date : 2024-09-20 DOI: 10.1002/bies.202400150
Deepak D. Bhandari, Federica Brandizzi
{"title":"Linking secretion and cytoskeleton in immunity– a case for Arabidopsis TGNap1","authors":"Deepak D. Bhandari, Federica Brandizzi","doi":"10.1002/bies.202400150","DOIUrl":"https://doi.org/10.1002/bies.202400150","url":null,"abstract":"In plants, robust defense depends on the efficient and resilient trafficking supply chains to the site of pathogen attack. Though the importance of intracellular trafficking in plant immunity has been well established, a lack of clarity remains regarding the contribution of the various trafficking pathways in transporting immune-related proteins. We have recently identified a trans-Golgi network protein, TGN-ASSOCIATED PROTEIN 1 (TGNap1), which functionally links post-Golgi vesicles with the cytoskeleton to transport immunity-related proteins in the model plant species <i>Arabidopsis thaliana</i>. We propose new hypotheses on the various functional implications of TGNap1 and then elaborate on the surprising heterogeneity of TGN vesicles during immunity revealed by the discovery of TGNap1 and other TGN-associated proteins in recent years.","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142268019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cytoskeletal mechanisms regulating attaching/effacing bacteria interactions with host cells: It takes a village to build the pedestal 调节附着/脱离细菌与宿主细胞相互作用的细胞骨架机制:建造基座需要一个村庄
IF 4 3区 生物学
BioEssays Pub Date : 2024-09-20 DOI: 10.1002/bies.202400160
Nayden G. Naydenov, Armando Marino-Melendez, Kenneth G. Campellone, Andrei I. Ivanov
{"title":"Cytoskeletal mechanisms regulating attaching/effacing bacteria interactions with host cells: It takes a village to build the pedestal","authors":"Nayden G. Naydenov, Armando Marino-Melendez, Kenneth G. Campellone, Andrei I. Ivanov","doi":"10.1002/bies.202400160","DOIUrl":"https://doi.org/10.1002/bies.202400160","url":null,"abstract":"The actin cytoskeleton is a key cellular structure subverted by pathogens to infect and survive in or on host cells. Several pathogenic strains of <i>Escherichia coli</i>, such as enteropathogenic <i>E. coli</i> (EPEC) and enterohemorrhagic <i>E. coli</i> (EHEC), developed a unique mechanism to remodel the actin cytoskeleton that involves the assembly of actin filament-rich pedestals beneath the bacterial attachment sites. Actin pedestal assembly is driven by bacterial effectors injected into the host cells, and this structure is important for EPEC and EHEC colonization. While the interplay between bacterial effectors and the actin polymerization machinery of host cells is well-understood, how other mechanisms of actin filament remodelling regulate pedestal assembly and bacterial attachment are poorly investigated. This review discusses the gaps in our understanding of the complexity of the actin cytoskeletal remodelling during EPEC and EHEC infection. We describe possible roles of actin depolymerizing, crosslinking and motor proteins in pedestal dynamics, and bacterial interactions with the host cells. We also discuss the biological significance of pedestal assembly for bacterial infection.","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142268018","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Compartmentalized signaling in the soma: Coordination of electrical and protein kinase A signaling at neuronal ER‐plasma membrane junctions 体节中的区隔化信号传导:神经元ER-质膜连接处的电信号和蛋白激酶A信号的协调
IF 4 3区 生物学
BioEssays Pub Date : 2024-09-13 DOI: 10.1002/bies.202400126
Nicholas C. Vierra
{"title":"Compartmentalized signaling in the soma: Coordination of electrical and protein kinase A signaling at neuronal ER‐plasma membrane junctions","authors":"Nicholas C. Vierra","doi":"10.1002/bies.202400126","DOIUrl":"https://doi.org/10.1002/bies.202400126","url":null,"abstract":"Neuronal information processing depends on converting membrane depolarizations into compartmentalized biochemical signals that can modify neuronal activity and structure. However, our understanding of how neurons translate electrical signals into specific biochemical responses remains limited, especially in the soma where gene expression and ion channel function are crucial for neuronal activity. Here, I emphasize the importance of physically compartmentalizing action potential‐triggered biochemical reactions within the soma. Emerging evidence suggests that somatic endoplasmic reticulum–plasma membrane (ER‐PM) junctions are specialized organelles that coordinate electrical and biochemical signaling. The juxtaposition of ion channels and signaling proteins at a prominent subset of these sites enables compartmentalized calcium and cAMP‐dependent protein kinase (PKA) signaling. I explore the hypothesis that these PKA‐containing ER‐PM junctions serve as critical sites for translating membrane depolarizations into PKA signals and identify key gaps in knowledge of the assembly, regulation, and neurobiological functions of this somatic signaling system.","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142268021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Health‐promoting worms? Prospects and pitfalls of helminth therapy 促进健康的蠕虫?蠕虫疗法的前景与陷阱
IF 4 3区 生物学
BioEssays Pub Date : 2024-09-12 DOI: 10.1002/bies.202400080
Ingrid Lamminpää, Federico Boem, Amedeo Amedei
{"title":"Health‐promoting worms? Prospects and pitfalls of helminth therapy","authors":"Ingrid Lamminpää, Federico Boem, Amedeo Amedei","doi":"10.1002/bies.202400080","DOIUrl":"https://doi.org/10.1002/bies.202400080","url":null,"abstract":"In this manuscript, we explore the potential therapeutic use of helminths. After analyzing helminths’ role in connection with human health from the perspective of their symbiotic and evolutionary relationship, we critically examine some studies on their therapeutic applications. In doing so, we focus on some prominent mechanisms of action and potential benefits, but also on the exaggerations and theoretical and methodological difficulties of such proposals. We conclude that further studies are needed to fully explore the potential benefits of this perspective, and we encourage the scientific community in doing so.","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142208408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Tissue-resident memory T cells: Harnessing their properties against infection for cancer treatment 组织驻留记忆 T 细胞:利用其抗感染特性治疗癌症
IF 4 3区 生物学
BioEssays Pub Date : 2024-09-11 DOI: 10.1002/bies.202400119
João Fernandes, Marc Veldhoen, Cristina Ferreira
{"title":"Tissue-resident memory T cells: Harnessing their properties against infection for cancer treatment","authors":"João Fernandes, Marc Veldhoen, Cristina Ferreira","doi":"10.1002/bies.202400119","DOIUrl":"https://doi.org/10.1002/bies.202400119","url":null,"abstract":"We have rapidly gained insights into the presence and function of T lymphocytes in non-lymphoid tissues, the tissue-resident memory T (T<sub>RM</sub>) cells. The central pillar of adaptive immunity has been expanded from classic central memory T cells giving rise to progeny upon reinfection and effector memory cells circulating through the blood and patrolling the tissues to include T<sub>RM</sub> cells that reside and migrate inside solid organs and tissues. Their development and maintenance have been studied in detail, providing exciting clues on how their unique properties used to fight infections may benefit therapies against solid tumors. We provide an overview of CD8 T<sub>RM</sub> cells and the properties that make them of interest for vaccination and cancer therapies.","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142208410","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The researcher's guide to selecting biomarkers in mental health studies 研究人员在心理健康研究中选择生物标记物指南
IF 3.2 3区 生物学
BioEssays Pub Date : 2024-09-11 DOI: 10.1002/bies.202300246
Josine E. Verhoeven, Owen M. Wolkowitz, Isaac Barr Satz, Quinn Conklin, Femke Lamers, Catharina Lavebratt, Jue Lin, Daniel Lindqvist, Stefanie E. Mayer, Philippe A. Melas, Yuri Milaneschi, Martin Picard, Ryan Rampersaud, Natalie Rasgon, Kathryn Ridout, Gustav Söderberg Veibäck, Caroline Trumpff, Audrey R. Tyrka, Kathleen Watson, Gwyneth Winnie Y. Wu, Ruoting Yang, Anthony S. Zannas, Laura K. M. Han, Kristoffer N. T. Månsson
{"title":"The researcher's guide to selecting biomarkers in mental health studies","authors":"Josine E. Verhoeven,&nbsp;Owen M. Wolkowitz,&nbsp;Isaac Barr Satz,&nbsp;Quinn Conklin,&nbsp;Femke Lamers,&nbsp;Catharina Lavebratt,&nbsp;Jue Lin,&nbsp;Daniel Lindqvist,&nbsp;Stefanie E. Mayer,&nbsp;Philippe A. Melas,&nbsp;Yuri Milaneschi,&nbsp;Martin Picard,&nbsp;Ryan Rampersaud,&nbsp;Natalie Rasgon,&nbsp;Kathryn Ridout,&nbsp;Gustav Söderberg Veibäck,&nbsp;Caroline Trumpff,&nbsp;Audrey R. Tyrka,&nbsp;Kathleen Watson,&nbsp;Gwyneth Winnie Y. Wu,&nbsp;Ruoting Yang,&nbsp;Anthony S. Zannas,&nbsp;Laura K. M. Han,&nbsp;Kristoffer N. T. Månsson","doi":"10.1002/bies.202300246","DOIUrl":"10.1002/bies.202300246","url":null,"abstract":"<p>Clinical mental health researchers may understandably struggle with how to incorporate biological assessments in clinical research. The options are numerous and are described in a vast and complex body of literature. Here we provide guidelines to assist mental health researchers seeking to include biological measures in their studies. Apart from a focus on behavioral outcomes as measured via interviews or questionnaires, we advocate for a focus on biological pathways in clinical trials and epidemiological studies that may help clarify pathophysiology and mechanisms of action, delineate biological subgroups of participants, mediate treatment effects, and inform personalized treatment strategies. With this paper we aim to bridge the gap between clinical and biological mental health research by (1) discussing the clinical relevance, measurement reliability, and feasibility of relevant peripheral biomarkers; (2) addressing five types of biological tissues, namely blood, saliva, urine, stool and hair; and (3) providing information on how to control sources of measurement variability.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/bies.202300246","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142208411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Beyond RNAi: How the Dicer protein modulates the antiviral innate immune response in mammalian cells: Mammalian Dicer could regulate the innate immune response in an RNAi-independent manner as a result of losing long dsRNA processive activity. 超越 RNAi:Dicer 蛋白如何调节哺乳动物细胞的抗病毒先天免疫反应:哺乳动物的 Dicer 由于失去了长 dsRNA 的加工活性,因此可以不依赖 RNAi 的方式调节先天性免疫反应。
IF 3.2 3区 生物学
BioEssays Pub Date : 2024-09-09 DOI: 10.1002/bies.202400173
Léa Gaucherand, Morgane Baldaccini, Sébastien Pfeffer
{"title":"Beyond RNAi: How the Dicer protein modulates the antiviral innate immune response in mammalian cells: Mammalian Dicer could regulate the innate immune response in an RNAi-independent manner as a result of losing long dsRNA processive activity.","authors":"Léa Gaucherand, Morgane Baldaccini, Sébastien Pfeffer","doi":"10.1002/bies.202400173","DOIUrl":"https://doi.org/10.1002/bies.202400173","url":null,"abstract":"<p><p>While Dicer plays an important antiviral role through the RNAi pathway in plants and invertebrates, its contribution to antiviral immunity in vertebrates and more specifically mammals is more controversial. The apparent limited RNAi activity in mammalian cells has been attributed to the reduced long dsRNA processive activity of mammalian Dicer, as well as a functional incompatibility between the RNAi and IFN pathways. Why Dicer has lost this antiviral activity in the profit of the IFN pathway is still unclear. We propose that the primary direct antiviral activity of Dicer has been functionally replaced by other sensors in the IFN pathway, leading to its specialization toward microRNA maturation. As a result, Dicer can regulate the innate immune response and prevent basal activation of the IFN pathway in mammals. Here, we discuss this hypothesis, highlighting how the adaptation of the helicase domain of mammalian Dicer may be key to this process.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142153158","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Research progress on plant stress-associated protein (SAP) family: Master regulators to deal with environmental stresses. 植物胁迫相关蛋白(SAP)家族的研究进展:应对环境胁迫的主调节因子
IF 3.2 3区 生物学
BioEssays Pub Date : 2024-09-09 DOI: 10.1002/bies.202400097
Rania Ben Saad, Walid Ben Romdhane, Natália Čmiková, Narjes Baazaoui, Mohamed Taieb Bouteraa, Bouthaina Ben Akacha, Yosra Chouaibi, Maria Maisto, Anis Ben Hsouna, Stefania Garzoli, Alina Wiszniewska, Miroslava Kačániová
{"title":"Research progress on plant stress-associated protein (SAP) family: Master regulators to deal with environmental stresses.","authors":"Rania Ben Saad, Walid Ben Romdhane, Natália Čmiková, Narjes Baazaoui, Mohamed Taieb Bouteraa, Bouthaina Ben Akacha, Yosra Chouaibi, Maria Maisto, Anis Ben Hsouna, Stefania Garzoli, Alina Wiszniewska, Miroslava Kačániová","doi":"10.1002/bies.202400097","DOIUrl":"https://doi.org/10.1002/bies.202400097","url":null,"abstract":"<p><p>Every year, unfavorable environmental factors significantly affect crop productivity and threaten food security. Plants are sessile; they cannot move to escape unfavorable environmental conditions, and therefore, they activate a variety of defense pathways. Among them are processes regulated by stress-associated proteins (SAPs). SAPs have a specific zinc finger domain (A20) at the N-terminus and either AN1 or C2H2 at the C-terminus. SAP proteins are involved in many biological processes and in response to various abiotic or biotic constraints. Most SAPs play a role in conferring transgenic stress resistance and are stress-inducible. The emerging field of SAPs in abiotic or biotic stress response regulation has attracted the attention of researchers. Although SAPs interact with various proteins to perform their functions, the exact mechanisms of these interactions remain incompletely understood. This review aims to provide a comprehensive understanding of SAPs, covering their diversity, structure, expression, and subcellular localization. SAPs play a pivotal role in enabling crosstalk between abiotic and biotic stress signaling pathways, making them essential for developing stress-tolerant crops without yield penalties. Collectively, understanding the complex regulation of SAPs in stress responses can contribute to enhancing tolerance against various environmental stresses through several techniques such as transgenesis, classical breeding, or gene editing.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142153159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dangerous liaisons: Loss of keratinocyte control over melanocytes in melanomagenesis. 危险的联系黑色素瘤形成过程中角质细胞失去对黑色素细胞的控制。
IF 3.2 3区 生物学
BioEssays Pub Date : 2024-09-04 DOI: 10.1002/bies.202400135
Kathleen J Green, Jenny Pokorny, Brieanna Jarrell
{"title":"Dangerous liaisons: Loss of keratinocyte control over melanocytes in melanomagenesis.","authors":"Kathleen J Green, Jenny Pokorny, Brieanna Jarrell","doi":"10.1002/bies.202400135","DOIUrl":"https://doi.org/10.1002/bies.202400135","url":null,"abstract":"<p><p>Melanomas arise from transformed melanocytes, positioned at the dermal-epidermal junction in the basal layer of the epidermis. Melanocytes are completely surrounded by keratinocyte neighbors, with which they communicate through direct contact and paracrine signaling to maintain normal growth control and homeostasis. UV radiation from sunlight reshapes this communication network to drive a protective tanning response. However, repeated rounds of sun exposure result in accumulation of mutations in melanocytes that have been considered as primary drivers of melanoma initiation and progression. It is now clear that mutations in melanocytes are not sufficient to drive tumor formation-the tumor environment plays a critical role. This review focuses on changes in melanocyte-keratinocyte communication that contribute to melanoma initiation and progression, with a particular focus on recent mechanistic insights that lay a foundation for developing new ways to intercept melanoma development.</p>","PeriodicalId":9264,"journal":{"name":"BioEssays","volume":null,"pages":null},"PeriodicalIF":3.2,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142131899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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