{"title":"A macrophage-conditioned medium model recapitulates inflammation-associated suppression of UCP-1 expression in KK-Ay mice.","authors":"Hisako Takahashi, Hiromu Morimoto, Hirofumi Inoue, Kentaro Kaneko, Tsuyoshi Goto, Teruo Kawada, Mariko Uehara, Nobuyuki Takahashi","doi":"10.1093/bbb/zbag133","DOIUrl":"https://doi.org/10.1093/bbb/zbag133","url":null,"abstract":"<p><p>Macrophage-conditioned medium models are widely used in obesity research, but correspondence with obese animals has not been examined. We compared the effects of Kaempferia parviflora in this model and KK-Ay diabetic obese model mice. Anti-inflammatory effects and restoration of uncoupling protein-1 (UCP-1) expression were observed in both models, indicating that the macrophage-conditioned medium model recapitulates inflammation-associated suppression of UCP-1 expression.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":""},"PeriodicalIF":1.5,"publicationDate":"2026-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148863596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Htun Inzali, Sakuntala Saijai, Wakako Okada, Jun Ogawa, Akinori Ando
{"title":"Development of a defined three-strain nitrifying microbial community for ammonification and nitrification under organic nitrogen conditions.","authors":"Htun Inzali, Sakuntala Saijai, Wakako Okada, Jun Ogawa, Akinori Ando","doi":"10.1093/bbb/zbag131","DOIUrl":"https://doi.org/10.1093/bbb/zbag131","url":null,"abstract":"<p><p>A simplified synthetic nitrifying microbial community capable of sequential ammonification and nitrification under organic conditions was constructed using three defined strains: Bacillus badius NBRC 15713, Nitrosomonas europaea NBRC 14298, and Nitrobacter winogradskyi NBRC 14297. This co-culture achieved complete ammonification and nitrification under selected organic nitrogen conditions, with NO₃⁻-N accumulation of approximately 56 mg-N/L and no residual NO₂⁻-N detected. RT-qPCR analysis showed that changes in the relative abundance of N. europaea and N. winogradskyi were associated with changes in inorganic nitrogen concentrations during cultivation, indicating that the co-culture supported the growth and activity of nitrifying bacteria despite the presence of organic compounds that inhibit nitrification. This defined three-strain community provides a reproducible model for studying sequential microbial nitrogen conversion under organic nitrogen conditions.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":""},"PeriodicalIF":1.5,"publicationDate":"2026-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148856952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Syntheses of Nostodione A and Half Scytonemins.","authors":"Yutaro Udagawa, Seijiro Hosokawa","doi":"10.1093/bbb/zbag130","DOIUrl":"https://doi.org/10.1093/bbb/zbag130","url":null,"abstract":"<p><p>Syntheses of nostodione A and half scytonemins have been achieved. Nostodione A was synthesized by oxidation of a compound possessing the 3,4-dihydrocyclopenta[b]indol-2(1H)-one skeleton, which was employed in our scytonemin synthesis. Half scytonemins have been synthesized from the same intermediate by the reaction sequence including reduction to indoline, Pd (0)-catalyzed arylation at the α position of the ketone, and oxidation of both the side chain and the tricyclic core structure. UV-Vis spectra of half scytonemins were compared with that of scytonemin, a UV-absorbing cyanobacterial sheath pigment.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":""},"PeriodicalIF":1.5,"publicationDate":"2026-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148817326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cloning and characterization of a novel oleic acid hydratase from the filamentous fungus Fusarium sp. D2.","authors":"Takaiku Sakamoto, Naomi Murakawa, Yume Shibata, Shigenobu Kishino, Jun Ogawa, Eiji Sakuradani","doi":"10.1093/bbb/zbag091","DOIUrl":"10.1093/bbb/zbag091","url":null,"abstract":"<p><p>The filamentous fungus Fusarium sp. D2 strain produces hydroxy fatty acids via the hydration of unsaturated fatty acids under anaerobic or microaerobic conditions. In this study, the oleate hydratase gene (D2ohy) derived from Fusarium sp. D2 was cloned for the first time from a fungal source. The amino acid sequence of D2Ohy was up to 69.7% homologous to bacterial oleate hydratases (Ohys) and contained the flavin adenine dinucleotide (FAD)-binding motif, FAD-lid, and active loop, all of which are crucial for hydration activity. D2Ohy was stable over a temperature range of 40-50 °C and a pH range of 6.0-8.0, demonstrating properties distinct from previously reported bacterial-derived Ohys. Compared to bacterial Ohys, D2Ohy efficiently utilized oleic, palmitoleic, linoleic, γ-linolenic, and ricinoleic acids as substrates. This study reports novel functional properties of D2Ohy, identified for the first time in fungi.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":"1165-1170"},"PeriodicalIF":1.5,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148300977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Concomitant short-term ingestion of fucoidan improves the initial inflammation and immune dysfunction caused by a high-fat diet.","authors":"Sunao Abe, Hyo Hamamoto, Hiro Kobayashi, Yoshikazu Saito, Tomoko Ishijima, Shinji Okada, Keiko Abe, Hiroko Hoshi","doi":"10.1093/bbb/zbag081","DOIUrl":"10.1093/bbb/zbag081","url":null,"abstract":"<p><p>We examined the effects of fucoidan, a sulfated polysaccharide, administered concurrently with the onset of a high-fat diet (HFD) for a short period in C57BL/6 N mice to evaluate its immunological effects under obesity-inducing conditions. Numerous genes that were downregulated in the HFD group relative to the control-diet group were restored in the HFD + fucoidan group; these genes were mainly associated with inflammatory responses and cellular functions, including migration and viability, as identified by DNA microarray analysis. Upstream regulator analysis in ingenuity pathway analysis identified numerous cytokines and inflammatory mediators. Quantitative PCR confirmed that the expression of selected inflammatory cytokine genes-particularly Ifn-γ and Il-5-was decreased in the HFD group but restored in the HFD + fucoidan group. Our study suggests that fucoidan administered concurrently with an HFD attenuates HFD-induced downregulation of inflammatory and immune-related functions, including T- and B-cell functions, and may improve HFD-induced immune dysfunction and imbalance.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":"1228-1236"},"PeriodicalIF":1.5,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148359332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Insig2 3'UTR shortening by alternative polyadenylation escapes from miR-96-5p-mediated regulation and inhibits adipogenesis.","authors":"Shizhong Ren, Xuyong Qin, Lichun Zhang, Chengping Li, Yuanyuan Yu, Wenhao Zhou, Meiman Zhao, Guoli Zhou","doi":"10.1093/bbb/zbag095","DOIUrl":"10.1093/bbb/zbag095","url":null,"abstract":"<p><p>Alternative polyadenylation (APA) is a key post-transcriptional regulatory mechanism in eukaryotes, but its role in adipogenesis remains poorly understood. Here, we investigated how insulin-induced gene 2 (Insig2) APA regulates adipogenesis. Functional assays showed that Insig2 knockdown promoted 3T3-L1 preadipocyte differentiation, whereas Insig2 overexpression inhibited it. During adipogenesis, Insig2 generated two APA isoforms with distinct 3'UTR lengths, and the short 3'UTR isoform was more abundant than the long isoform. Mechanistically, miR-96-5p specifically targeted the unique extension region of the long Insig2 3'UTR isoform to suppress its expression, thereby alleviating its inhibitory effect on adipogenesis. In contrast, the short Insig2 isoform lacked the miR-96-5p binding site and escaped miR-96-5p-mediated repression, thus exerting a stronger inhibitory effect on adipogenesis. Collectively, these findings reveal an isoform-specific Insig2 APA/miR-96-5p regulatory axis that dynamically controls adipogenesis at the post-transcriptional level. Our results revealed a new regulatory mechanism of Insig2 APA in adipogenesis.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":"1171-1181"},"PeriodicalIF":1.5,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148306959","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Hot-water extract of defatted Perilla frutescens seed residue suppresses osteoclast differentiation and improves bone-related parameters in ovariectomized mice.","authors":"Hiroyuki Asano, Sogo Nishimoto","doi":"10.1093/bbb/zbag082","DOIUrl":"10.1093/bbb/zbag082","url":null,"abstract":"<p><p>The defatted residue of Perilla frutescens seeds, a by-product of edible oil production, remains largely underutilized in food applications. This study investigated the effects of a hot-water extract derived from this residue on osteoclast differentiation and bone-related changes. In bone marrow-derived macrophages, the extract inhibited receptor activator of nuclear factor-κB ligand-induced osteoclast differentiation, as evidenced by the reduced formation of tartrate-resistant acid phosphatase-positive multinucleated cells and decreased tartrate-resistant acid phosphatase activity, without significantly affecting cell viability. In ovariectomized mice, the extract increased trabecular region length and cortical bone thickness. In a separate experiment, it enhanced femoral mechanical strength in a three-point bending test. High-performance liquid chromatography analysis identified rosmarinic acid and salviaflaside in the extract. These findings suggest that defatted Perilla frutescens seed residue may be a functional resource for improving bone health.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":"1245-1253"},"PeriodicalIF":1.5,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148238841","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Altered flagellin-TLR5 signaling pathway in the interaction between the host and laboratory Escherichia coli strains engineered for enhanced intestinal colonization in mice.","authors":"Tsuyoshi Tachibana, Atsushi Minami, Ryutaro Fukui, Ryota Tochinai, Kohei Mochizuki, Wataru Fujii, Tetsuhiro Ogawa, Shigeru Kakuta","doi":"10.1093/bbb/zbag079","DOIUrl":"10.1093/bbb/zbag079","url":null,"abstract":"<p><p>The intestinal microbiota is essential for maintaining intestinal homeostasis by regulating mucosal immune responses. Identifying bacterial traits that support stable host interactions is therefore crucial for developing next-generation mucosal probiotics. RNase T2 is a conserved ribonuclease with species-specific functions. In Escherichia coli, RNase T2 (RNase I) suppresses biofilm formation, a key process for intestinal colonization. We previously showed that an RNase I-deficient E. coli (Δrna) strain stably colonizes the mouse intestine. Here, we analyzed the immunogenic properties of the Δrna strain. Heat-killed Δrna induced an early IL-1β and TNF-α-skewed cytokine response in RAW264.7 macrophages, with reduced IL-6 expression compared to wild type. In mice, Δrna colonization caused no intestinal tissue injury but enhanced IL-6 and IL-22 expression in the cecum and colon. Selected TLR-specific reporter assays identified TLR5-dependent signaling driven by increased FliC expression. These findings show that RNase I deficiency modulates immune activation while maintaining non-pathogenic mucosal interactions.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":"1265-1272"},"PeriodicalIF":1.5,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148210095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rio Kurihara, Yumi Takayama, Riyo Hidaka, Kanae Masuda, Hikono Sakata, Yukina Yumen, Tomomi Komura, Daisuke Saigusa, Masaru Yoshida
{"title":"Metabolomic profiling of LPS-induced systemic inflammation in mice: tryptophan as a biomarker for nutritional and inflammatory status.","authors":"Rio Kurihara, Yumi Takayama, Riyo Hidaka, Kanae Masuda, Hikono Sakata, Yukina Yumen, Tomomi Komura, Daisuke Saigusa, Masaru Yoshida","doi":"10.1093/bbb/zbag078","DOIUrl":"10.1093/bbb/zbag078","url":null,"abstract":"<p><p>Lipopolysaccharide (LPS)-induced inflammation triggers metabolic reprogramming and nutritional decline. This study aimed to identify biomarkers for inflammatory and nutritional stress using gas chromatography-mass spectrometry (GC-MS/MS)-based metabolomic profiling. Male mice received LPS to induce systemic inflammation. Evaluations included liver histology (H&E, Gr-1), blood biochemistry, and metabolomic analysis of liver and plasma. LPS administration significantly increased hepatic neutrophil infiltration and liver enzymes, while decreasing nutritional markers (total protein, albumin, LDL-cholesterol). In the liver, LPS increased glycolytic and TCAcycle intermediates (e.g. 3-phosphoglycerate, citric acid) but decreased amino acids, including glutamine and tryptophan. Plasma analysis showed significant decreases in tryptophan, glucose, and succinic acid. Notably, tryptophan was significantly reduced in both compartments. Our findings demonstrate that tryptophan serves as a robust biomarker for monitoring the intersection of inflammatory response and nutritional status, reflecting synchronized metabolic shifts in the liver and plasma.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":"1237-1244"},"PeriodicalIF":1.5,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148197028","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Saki Morimoto, Takeru Koga, Saho Miyazaki, Akihiro Tai
{"title":"Neurite outgrowth-promoting furanocoumarins isolated from sudachi juice in PC12 cells.","authors":"Saki Morimoto, Takeru Koga, Saho Miyazaki, Akihiro Tai","doi":"10.1093/bbb/zbag092","DOIUrl":"10.1093/bbb/zbag092","url":null,"abstract":"<p><p>Sudachi (Citrus sudachi, a citrus fruit of the Rutaceae family) juice was found to promote neurite outgrowth in PC12 cells. Activity-guided purification of the juice led to the isolation of two furanocoumarins, byakangelicin and isopimpinellin, and a flavone, demethoxysudachitin, identifying them as neurite-outgrowth promoters for the first time. Byakangelicin and isopimpinellin showed markedly stronger neurite outgrowth-promoting activity than demethoxysudachitin, prompting a comparative evaluation of five furanocoumarins, including both isolated and related reference compounds. The results showed that the basic furanocoumarin scaffold alone is inactive, whereas substitution at either the C5 or C8 position of a furanocoumarin confers prominent activity, with dual substitution further improving the activity. Among the tested compounds, byakangelicin and isopimpinellin exhibited the most potent neurite outgrowth-promoting activity. These findings identify sudachi-derived furanocoumarins as previously unrecognized neurite-outgrowth promoters and suggest their potential as neurotrophic agents for supporting cognitive function.</p>","PeriodicalId":9175,"journal":{"name":"Bioscience, Biotechnology, and Biochemistry","volume":" ","pages":"1147-1153"},"PeriodicalIF":1.5,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148307005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}