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The Complete Genome Sequence of Adansonia digitata (Malvaceae, Malvales), the African Baobab. 非洲猴面包树Adansonia digitata (malvacae, Malvales)的全基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 DOI: 10.56179/001c.72789
Stephen Woods, Kathleen O'Neill, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Adansonia digitata</i> (Malvaceae, Malvales), the African Baobab.","authors":"Stephen Woods,&nbsp;Kathleen O'Neill,&nbsp;Stacy Pirro","doi":"10.56179/001c.72789","DOIUrl":"https://doi.org/10.56179/001c.72789","url":null,"abstract":"<p><p><i>Adansonia digitata</i>, the African Baobab, is a long-lived tree species found in sub-Saharan Africa. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR23340274) and assembled genome (JAQSVH000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019600/pdf/nihms-1881709.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343286","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 9 Species of Swallowtail Butterflies (Papilionidae, Lepidoptera). 9种凤尾蝶(凤蝶科，鳞翅目)全基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 DOI: 10.56179/001c.73927
Deborah Triant, Stacy Pirro
{"title":"The Complete Genome Sequences of 9 Species of Swallowtail Butterflies (Papilionidae, Lepidoptera).","authors":"Deborah Triant,&nbsp;Stacy Pirro","doi":"10.56179/001c.73927","DOIUrl":"https://doi.org/10.56179/001c.73927","url":null,"abstract":"<p><p>We present the complete genome sequences of 9 species of Papilionidae from 3 genera (Graphium, Ornithoptera, Papilio). Illumina sequencing was performed on genetic material from individual wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10078614/pdf/nihms-1887200.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 7 Species of Epizoanthus (Epizoanthidae, Zoantharia, Hexacorallia, Cnidaria). 7种刺槐属植物的全基因组序列分析(刺槐科、刺槐属、刺虫属)。
Biodiversity genomes Pub Date : 2023-03-01 DOI: 10.56179/001c.72780
Hiroki Kise, James Davis Reimer, Stacy Pirro
{"title":"The Complete Genome Sequences of 7 Species of <i>Epizoanthus</i> (Epizoanthidae, Zoantharia, Hexacorallia, Cnidaria).","authors":"Hiroki Kise,&nbsp;James Davis Reimer,&nbsp;Stacy Pirro","doi":"10.56179/001c.72780","DOIUrl":"https://doi.org/10.56179/001c.72780","url":null,"abstract":"<p><p>We present the complete genome sequences of 7 species of the zoantharian genus <i>Epizoanthus</i>. Illumina sequencing was performed on genetic material from single wild-collected individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019602/pdf/nihms-1881078.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9347875","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
The Complete Genome Sequence of Curcuma longa (Zingiberaceae, Zingiberales), Turmeric. 姜黄（姜科、姜属）的完整基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 Epub Date: 2023-03-17 DOI: 10.56179/001c.73625
Zainab El Ouafi, Stacy Pirro, Najib Al Idrissi, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Curcuma longa</i> (Zingiberaceae, Zingiberales), Turmeric.","authors":"Zainab El Ouafi, Stacy Pirro, Najib Al Idrissi, Hassan Ghazal","doi":"10.56179/001c.73625","DOIUrl":"10.56179/001c.73625","url":null,"abstract":"<p><p><i>Curcuma longa</i> is a perennial native to India and Southeast Asia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR11229490) and assembled genome (JAOBBC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062376/pdf/nihms-1884921.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9400241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Chrysina resplendens (Scarabaeidae, Coleoptera) the Golden Jewel Scarab. 金玉圣甲虫(金龟子科，鞘翅目)全基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 DOI: 10.56179/001c.72798
Douae El Ghoubali, Stacy Pirro, Chakib Nejjari, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Chrysina resplendens</i> (Scarabaeidae, Coleoptera) the Golden Jewel Scarab.","authors":"Douae El Ghoubali,&nbsp;Stacy Pirro,&nbsp;Chakib Nejjari,&nbsp;Hassan Ghazal","doi":"10.56179/001c.72798","DOIUrl":"https://doi.org/10.56179/001c.72798","url":null,"abstract":"<p><p><i>Chrysina resplendens</i> is a scarab beetle endemic to Central America. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170512) and Assembly (JAADJY000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019531/pdf/nihms-1881135.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343284","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Verbascum thapsus (Scrophulariaceae, Lamiales), the Common Mullein. 普通毛蕊花属植物马鞭草（Scrophulariaceae, Lamiales）的完整基因组序列。
Biodiversity genomes Pub Date : 2023-03-01 Epub Date: 2023-03-07 DOI: 10.56179/001c.73050
Oussama Badad, Stacy Pirro, Qamar Lahlimi, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Verbascum thapsus</i> (Scrophulariaceae, Lamiales), the Common Mullein.","authors":"Oussama Badad, Stacy Pirro, Qamar Lahlimi, Hassan Ghazal","doi":"10.56179/001c.73050","DOIUrl":"10.56179/001c.73050","url":null,"abstract":"<p><p><i>Verbascum thapsus</i> is a biennial plant native to Europe, northern Africa, and Asia and introduced in the Americas and Australia. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR18183247) and assembled genome (JAOXOC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10062438/pdf/nihms-1885463.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9400240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Draft Genome Sequence of Dorometra sesokonis (Antedonidae, Comatulida, Crinoidea, Echinodermata). 一个Dorometra sesokonis的基因组序列草案（Antedonidae，Comatulida，Crinoidea，Echinodermata）。
Biodiversity genomes Pub Date : 2023-01-01 DOI: 10.56179/001c.72775
Riccardo Virgili, Angelo Poliseno, Stacy Pirro, James Davis Reimer
{"title":"A Draft Genome Sequence of <i>Dorometra sesokonis</i> (Antedonidae, Comatulida, Crinoidea, Echinodermata).","authors":"Riccardo Virgili,&nbsp;Angelo Poliseno,&nbsp;Stacy Pirro,&nbsp;James Davis Reimer","doi":"10.56179/001c.72775","DOIUrl":"https://doi.org/10.56179/001c.72775","url":null,"abstract":"<p><p>We present the complete genome sequence of <i>Dorometra sesokonis</i>. Genome sequencing was performed on genetic material from a single wild-collected individual. The sequence reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019518/pdf/nihms-1881117.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343287","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves). 19种鹬(鞘翅目，鞘翅目，鸟类)的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-04-21 DOI: 10.56179/001c.74632
João Marcos G Capurucho, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 19 Species of Snipes (Scolopacidae, Charadriiformes, Aves).","authors":"João Marcos G Capurucho, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.74632","DOIUrl":"10.56179/001c.74632","url":null,"abstract":"<p><p>We present the complete genome sequences of 19 species of snipes from 7 genera. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10162776/pdf/nihms-1895121.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9439667","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of three species from the killifish genus Kryptolebias (Rivulidae, Cyprinodontiformes). 三种鳉鱼属(鲤科，鲤形目)的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 DOI: 10.56179/001c.77448
Waldir M Berbel-Filho, Stacy Pirro, Andrew W Thompson, Sergio M Q Lima, Sofia Consuegra, Ricardo Betancur
{"title":"The Complete Genome Sequences of three species from the killifish genus <i>Kryptolebias</i> (Rivulidae, Cyprinodontiformes).","authors":"Waldir M Berbel-Filho,&nbsp;Stacy Pirro,&nbsp;Andrew W Thompson,&nbsp;Sergio M Q Lima,&nbsp;Sofia Consuegra,&nbsp;Ricardo Betancur","doi":"10.56179/001c.77448","DOIUrl":"https://doi.org/10.56179/001c.77448","url":null,"abstract":"<p><p>The killifish genus <i>Kryptolebias</i> currently contains seven recognized species found in freshwater and mangrove microhabitats in South and Central America, the Caribbean, and Florida. <i>Kryptolebias</i> species have several unique features. Beyond its amphibious nature, two of the <i>Kryptolebias</i> species (<i>K. marmoratus</i> and <i>K. hermaphroditus sensu</i> Costa 2011) are the only known vertebrates capable of self-fertilization. Although reference genomes for self-fertilizing species are readily available, a complete understanding of the genomic basis leading to the transition in mating systems in the genus requires more genomic resources at a broader taxonomic level. Here, we present the complete genome sequences for three <i>Kryptolebias</i> species from Brazil: the endangered freshwater species <i>Kryptolebias brasiliensis</i> and <i>Kryptolebias gracilis</i> and the androdiecious but obligate outcrossing <i>Kryptolebias ocellatus</i> (<i>sensu</i> Costa 2011). The raw data and assembled genomes are available in GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10361417/pdf/nihms-1905249.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9862956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 2 Species of Geukensia (Brachidontinae, Mytilidae). 2种钩虫的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-10-15 DOI: 10.56179/001c.89031
John P Wares, Stacy Pirro
{"title":"The Complete Genome Sequences of 2 Species of Geukensia (Brachidontinae, Mytilidae).","authors":"John P Wares,&nbsp;Stacy Pirro","doi":"10.56179/001c.89031","DOIUrl":"10.56179/001c.89031","url":null,"abstract":"<p><p>We present the complete genome sequences of <i>Geukensia demissa</i> and <i>Geukensia granosissima</i>. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10601176/pdf/nihms-1938360.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54232582","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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