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The Complete Genome Sequences of 22 Species of Owls (Strigiformes, Aves). 22种猫头鹰（鹰形目，鸟类）的全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-01-10 DOI: 10.56179/001c.128167
Taylor Hains, Therese Catanach, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 22 Species of Owls (Strigiformes, Aves).","authors":"Taylor Hains, Therese Catanach, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.128167","DOIUrl":"https://doi.org/10.56179/001c.128167","url":null,"abstract":"<p><p>We present the complete genome sequences of 22 species of owls. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11741190/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 20 Species of African Tetras and Relatives of Families Alestidae, Hepsetidae, and Lepidarchidae (Teleostei: Characiformes).
Biodiversity genomes Pub Date : 2025-01-01 DOI: 10.56179/001c.128235
Bruno F Melo Melo, Stacy Pirro, Melanie L J Stiassny
{"title":"The Complete Genome Sequences of 20 Species of African Tetras and Relatives of Families Alestidae, Hepsetidae, and Lepidarchidae (Teleostei: Characiformes).","authors":"Bruno F Melo Melo, Stacy Pirro, Melanie L J Stiassny","doi":"10.56179/001c.128235","DOIUrl":"10.56179/001c.128235","url":null,"abstract":"<p><p>We present the complete genome sequences of 20 species of African tetras, robbers, and tigerfishes in the families Alestidae, Hepsetidae, and Lepidarchidae. Illumina sequencing was performed on genetic material from wild-caught and aquarium specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11801383/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143366896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Whole-Genome Sequencing of two Listrura and five Microcambeva Species (Trichomycteridae, Siluriformes), Rare and Threatened catfishes from the Atlantic Forest.
Biodiversity genomes Pub Date : 2024-12-01 Epub Date: 2024-12-30 DOI: 10.56179/001c.127693
Lucas S Medeiros, Sergio M Q Lima, Mario de Pinna, Igor C A Souto-Santos, Stacy Pirro, Waldir M Berbel-Filho
{"title":"Whole-Genome Sequencing of two <i>Listrura</i> and five <i>Microcambeva</i> Species (Trichomycteridae, Siluriformes), Rare and Threatened catfishes from the Atlantic Forest.","authors":"Lucas S Medeiros, Sergio M Q Lima, Mario de Pinna, Igor C A Souto-Santos, Stacy Pirro, Waldir M Berbel-Filho","doi":"10.56179/001c.127693","DOIUrl":"10.56179/001c.127693","url":null,"abstract":"<p><p><i>Listrura</i> and <i>Microcambeva</i> are two genera of small, rare and elusive catfishes of the Trichomycteridae family, endemic to the Atlantic Forest coastal drainages in Brazil. <i>Listrura</i> comprises 13 species with slender bodies, absent pelvic fins, and a distinct caudal-fin and caudal-peduncle morphology, while <i>Microcambeva</i> includes eight species with translucent bodies, typically buried in sandy substrates with exposed nasal barbels. The two genera inhabit fragile environments that are undergoing accelerated degradation, with <i>Listrura camposae</i> and <i>L. nematopteryx</i> classified as \"Critically Endangered\" (CR), and <i>L. picinguabae</i> as \"Near Threatened\" (NT). <i>Microcambeva</i> species face similar threats, with <i>M. bendego</i> proposed as CR and <i>M. draco</i> as \"Endangered\" (EN). Over the past two decades, collection efforts and taxonomic descriptions have expanded the diversity of these two genera, with descriptions of 11 species of <i>Listrura</i> and seven of <i>Microcambeva</i> species in that period. To address gaps in genetic data for those taxa, we herein present draft version of whole-genome sequences for two <i>Listrura</i> species - <i>L. nematopteryx</i> and <i>L. boticario</i> - and five <i>Microcambeva</i> species - <i>M. barbata</i>, <i>M. watu</i>, <i>M. jucuensis</i>, <i>M. bendego</i>, and <i>M. ribeirae</i>. These genomic data are critical for future studies on the evolutionary history and systematics of these unique catfishes, contributing to foundational knowledge of their biodiversity.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11801385/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143366894","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of two Species of Stegodyphus Spiders (Araneae: Eresidae) 两种石斑蛛的完整基因组序列（Araneae: Eresidae）
Biodiversity genomes Pub Date : 2024-08-08 DOI: 10.56179/001c.122353
T. J. Colston, Steven T. Cassidy, Kara J.M. Taylor, S. Pirro, Martha Haufiku, Tresia Kavili, Seth J. Eiseb, Carl N. Keiser
{"title":"The Complete Genome Sequences of two Species of Stegodyphus Spiders (Araneae: Eresidae)","authors":"T. J. Colston, Steven T. Cassidy, Kara J.M. Taylor, S. Pirro, Martha Haufiku, Tresia Kavili, Seth J. Eiseb, Carl N. Keiser","doi":"10.56179/001c.122353","DOIUrl":"https://doi.org/10.56179/001c.122353","url":null,"abstract":"We present the complete genome sequences of Stegodyphus bicolor and Stegodyphus dumicola. Illumina sequencing was performed on genetic material from specimens collected in Namibia in March 2023. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"54 46","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141929030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 29 Species of Ducks (Anatidae, Anseriformes). 29 种鸭子（鸭科，鸭形目）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-08-01 DOI: 10.56179/001c.122134
Emily Griffith, Stacy Pirro
{"title":"The Complete Genome Sequences of 29 Species of Ducks (Anatidae, Anseriformes).","authors":"Emily Griffith, Stacy Pirro","doi":"10.56179/001c.122134","DOIUrl":"10.56179/001c.122134","url":null,"abstract":"<p><p>We present genome sequences of 29 species of ducks from 8 genera. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11309123/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141908431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 7 Hypoplectrus species (Serranidae, Perciformes) 7 种蓑鲉（鮨科、鲈形目）的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-23 DOI: 10.56179/001c.117765
Arturo Acero, S. Pirro, Ricardo Betancur
{"title":"The Complete Genome Sequences of 7 Hypoplectrus species (Serranidae, Perciformes)","authors":"Arturo Acero, S. Pirro, Ricardo Betancur","doi":"10.56179/001c.117765","DOIUrl":"https://doi.org/10.56179/001c.117765","url":null,"abstract":"Species in the genus Hypoplectrus are found primarily in coral reefs in the Caribbean Sea and the Gulf of Mexico, particularly around Florida and the Bahamas. They are a popular choice for hobbyist saltwater aquariums. Members of this genus are simultaneous hermaphrodites, as they have both male and female sexual organs at the same time as an adult. We present the genome sequences of 7 species of Hypoplectrus. Raw read data and assembled genomes are available in Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"21 10","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141105252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 37 Bird Species from the Ecuadorian Andes 厄瓜多尔安第斯山脉 37 种鸟类的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-23 DOI: 10.56179/001c.117756
Abhimanyu Lele, Jacob R. Drucker, T. Hains, S. Pirro, John Bates, Elisa Bonaccorso
{"title":"The Complete Genome Sequences of 37 Bird Species from the Ecuadorian Andes","authors":"Abhimanyu Lele, Jacob R. Drucker, T. Hains, S. Pirro, John Bates, Elisa Bonaccorso","doi":"10.56179/001c.117756","DOIUrl":"https://doi.org/10.56179/001c.117756","url":null,"abstract":"We present the complete genome sequences of 37 Ecuadorian bird species widespread throughout the tropical Andes.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"17 7","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141104854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Ajuga reptans (Lamiaceae, Lamiales), Bugleweed 虫草 Ajuga reptans（灯心草科，Lamiales）的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-23 DOI: 10.56179/001c.117758
Toby Pirro, S. Pirro
{"title":"The Complete Genome Sequence of Ajuga reptans (Lamiaceae, Lamiales), Bugleweed","authors":"Toby Pirro, S. Pirro","doi":"10.56179/001c.117758","DOIUrl":"https://doi.org/10.56179/001c.117758","url":null,"abstract":"We present the whole genome sequence of Ajuga reptans. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR24502601) and assembled genome (JAUEKW000000000).","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"72 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141106040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 23 Finch Species (Fringillidae, Passeriformes) 23 个雀科物种（雀形目）的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-21 DOI: 10.56179/001c.117726
Louise Bodt, T. Hains, Daryl Coldren, S. Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 23 Finch Species (Fringillidae, Passeriformes)","authors":"Louise Bodt, T. Hains, Daryl Coldren, S. Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.117726","DOIUrl":"https://doi.org/10.56179/001c.117726","url":null,"abstract":"We present complete genome sequences of 23 species of finches from 6 genera.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"121 18","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141115645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Draft Genome Sequences of 63 Species of Catfish (Ariidae, Siluriformes) 63 种鲶鱼（鲤形目、绢鱼科）的基因组序列草案
Biodiversity genomes Pub Date : 2024-05-21 DOI: 10.56179/001c.117717
Melissa M. Rincon Sandoval, S. Pirro, Ricardo Betancur
{"title":"The Draft Genome Sequences of 63 Species of Catfish (Ariidae, Siluriformes)","authors":"Melissa M. Rincon Sandoval, S. Pirro, Ricardo Betancur","doi":"10.56179/001c.117717","DOIUrl":"https://doi.org/10.56179/001c.117717","url":null,"abstract":"We present genome sequences of 63 species of catfish from the Ariidae family. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"35 36","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141117468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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