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The Complete Genome Sequences of two Species of Stegodyphus Spiders (Araneae: Eresidae) 两种石斑蛛的完整基因组序列（Araneae: Eresidae）
Biodiversity genomes Pub Date : 2024-08-08 DOI: 10.56179/001c.122353
T. J. Colston, Steven T. Cassidy, Kara J.M. Taylor, S. Pirro, Martha Haufiku, Tresia Kavili, Seth J. Eiseb, Carl N. Keiser
{"title":"The Complete Genome Sequences of two Species of Stegodyphus Spiders (Araneae: Eresidae)","authors":"T. J. Colston, Steven T. Cassidy, Kara J.M. Taylor, S. Pirro, Martha Haufiku, Tresia Kavili, Seth J. Eiseb, Carl N. Keiser","doi":"10.56179/001c.122353","DOIUrl":"https://doi.org/10.56179/001c.122353","url":null,"abstract":"We present the complete genome sequences of Stegodyphus bicolor and Stegodyphus dumicola. Illumina sequencing was performed on genetic material from specimens collected in Namibia in March 2023. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141929030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 29 Species of Ducks (Anatidae, Anseriformes). 29 种鸭子（鸭科，鸭形目）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-08-01 DOI: 10.56179/001c.122134
Emily Griffith, Stacy Pirro
{"title":"The Complete Genome Sequences of 29 Species of Ducks (Anatidae, Anseriformes).","authors":"Emily Griffith, Stacy Pirro","doi":"10.56179/001c.122134","DOIUrl":"10.56179/001c.122134","url":null,"abstract":"<p><p>We present genome sequences of 29 species of ducks from 8 genera. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11309123/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141908431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 7 Hypoplectrus species (Serranidae, Perciformes) 7 种蓑鲉（鮨科、鲈形目）的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-23 DOI: 10.56179/001c.117765
Arturo Acero, S. Pirro, Ricardo Betancur
{"title":"The Complete Genome Sequences of 7 Hypoplectrus species (Serranidae, Perciformes)","authors":"Arturo Acero, S. Pirro, Ricardo Betancur","doi":"10.56179/001c.117765","DOIUrl":"https://doi.org/10.56179/001c.117765","url":null,"abstract":"Species in the genus Hypoplectrus are found primarily in coral reefs in the Caribbean Sea and the Gulf of Mexico, particularly around Florida and the Bahamas. They are a popular choice for hobbyist saltwater aquariums. Members of this genus are simultaneous hermaphrodites, as they have both male and female sexual organs at the same time as an adult. We present the genome sequences of 7 species of Hypoplectrus. Raw read data and assembled genomes are available in Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141105252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 37 Bird Species from the Ecuadorian Andes 厄瓜多尔安第斯山脉 37 种鸟类的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-23 DOI: 10.56179/001c.117756
Abhimanyu Lele, Jacob R. Drucker, T. Hains, S. Pirro, John Bates, Elisa Bonaccorso
{"title":"The Complete Genome Sequences of 37 Bird Species from the Ecuadorian Andes","authors":"Abhimanyu Lele, Jacob R. Drucker, T. Hains, S. Pirro, John Bates, Elisa Bonaccorso","doi":"10.56179/001c.117756","DOIUrl":"https://doi.org/10.56179/001c.117756","url":null,"abstract":"We present the complete genome sequences of 37 Ecuadorian bird species widespread throughout the tropical Andes.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141104854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Ajuga reptans (Lamiaceae, Lamiales), Bugleweed 虫草 Ajuga reptans（灯心草科，Lamiales）的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-23 DOI: 10.56179/001c.117758
Toby Pirro, S. Pirro
{"title":"The Complete Genome Sequence of Ajuga reptans (Lamiaceae, Lamiales), Bugleweed","authors":"Toby Pirro, S. Pirro","doi":"10.56179/001c.117758","DOIUrl":"https://doi.org/10.56179/001c.117758","url":null,"abstract":"We present the whole genome sequence of Ajuga reptans. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR24502601) and assembled genome (JAUEKW000000000).","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-05-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141106040","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 23 Finch Species (Fringillidae, Passeriformes) 23 个雀科物种（雀形目）的完整基因组序列
Biodiversity genomes Pub Date : 2024-05-21 DOI: 10.56179/001c.117726
Louise Bodt, T. Hains, Daryl Coldren, S. Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 23 Finch Species (Fringillidae, Passeriformes)","authors":"Louise Bodt, T. Hains, Daryl Coldren, S. Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.117726","DOIUrl":"https://doi.org/10.56179/001c.117726","url":null,"abstract":"We present complete genome sequences of 23 species of finches from 6 genera.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141115645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Draft Genome Sequences of 63 Species of Catfish (Ariidae, Siluriformes) 63 种鲶鱼（鲤形目、绢鱼科）的基因组序列草案
Biodiversity genomes Pub Date : 2024-05-21 DOI: 10.56179/001c.117717
Melissa M. Rincon Sandoval, S. Pirro, Ricardo Betancur
{"title":"The Draft Genome Sequences of 63 Species of Catfish (Ariidae, Siluriformes)","authors":"Melissa M. Rincon Sandoval, S. Pirro, Ricardo Betancur","doi":"10.56179/001c.117717","DOIUrl":"https://doi.org/10.56179/001c.117717","url":null,"abstract":"We present genome sequences of 63 species of catfish from the Ariidae family. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141117468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Draft Genome Sequences of 50 Salamander species (Caudata, Amphibia) 50 种蝾螈基因组序列草案（蝾螈科，两栖类）
Biodiversity genomes Pub Date : 2024-04-23 DOI: 10.56179/001c.116891
R. A. Pyron, S. Pirro, T. Hains, T. J. Colston, Edward A. Myers, Kyle A. O’Connell, David A. Beamer
{"title":"The Draft Genome Sequences of 50 Salamander species (Caudata, Amphibia)","authors":"R. A. Pyron, S. Pirro, T. Hains, T. J. Colston, Edward A. Myers, Kyle A. O’Connell, David A. Beamer","doi":"10.56179/001c.116891","DOIUrl":"https://doi.org/10.56179/001c.116891","url":null,"abstract":"We present partial genome sequences of 50 salamander species (Urodela) from 10 genera and 4 families. These span nearly the entire range of genome sizes in salamanders, from ~14–130GB, the latter of which is among the largest of all animal genomes. Only three salamander genomes were available to this point, from Ambystomatidae (one species) and Salamandridae (two species from two genera), to which we have added Amphiumidae (one species), Plethodontidae (45 species from 6 genera), Proteidae (one species), and Sirenidae (three species from two genera). These span ~140 million years of evolutionary divergence, leaving only Cryptobranchidae, Hynobiidae, and Rhyacotritonidae as salamander families without genome assemblies. These data should facilitate additional future work on speciation and genome evolution, both within Urodela and across Animalia.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140665847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 12 Species of Enteromius (Cyprinidae, Cypriniformes, Actinopteri) 12 种肠鲈鱼（鲤科，鲤形目，动翅目）的完整基因组序列
Biodiversity genomes Pub Date : 2024-04-19 DOI: 10.56179/001c.116676
P. Bragança, John P. Sullivan, S. Pirro, Albert Chakona
{"title":"The Complete Genome Sequences of 12 Species of Enteromius (Cyprinidae, Cypriniformes, Actinopteri)","authors":"P. Bragança, John P. Sullivan, S. Pirro, Albert Chakona","doi":"10.56179/001c.116676","DOIUrl":"https://doi.org/10.56179/001c.116676","url":null,"abstract":"We present the complete genome sequences of 12 species of Enteromius. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140682640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 12 Species of Plants from the Yucatan Peninsula, Mexico. 墨西哥尤卡坦半岛 12 种植物的完整基因组序列。
Biodiversity genomes Pub Date : 2024-04-08 DOI: 10.56179/001c.116283
Y. Peña-Ramírez, Natalia Y. Labrín-Sotomayor, P. A. Becerra-Lucio, Hugo Ruiz-González, Norka M. Fortuny-Fernández, Fulgencio Alatorre-Cobos, S. Pirro
{"title":"The Complete Genome Sequences of 12 Species of Plants from the Yucatan Peninsula, Mexico.","authors":"Y. Peña-Ramírez, Natalia Y. Labrín-Sotomayor, P. A. Becerra-Lucio, Hugo Ruiz-González, Norka M. Fortuny-Fernández, Fulgencio Alatorre-Cobos, S. Pirro","doi":"10.56179/001c.116283","DOIUrl":"https://doi.org/10.56179/001c.116283","url":null,"abstract":"We present the complete genome sequences of 12 species of plants from Campeche, Mexico and the greater Yucatan Peninsula: Agave americana, Agave angustifolia, Agave fourcroydes, Agave karwinskii, Agave potatorum, Agave tequiliana, Annona squamosa, Cedrela odorata, Pouteria campechiana, Pouteria glomerata, Trichilia hirta and Trichilia minutiflora.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140730383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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