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The Draft Genome Sequences of 63 Species of Catfish (Ariidae, Siluriformes) 63 种鲶鱼（鲤形目、绢鱼科）的基因组序列草案
Biodiversity genomes Pub Date : 2024-05-21 DOI: 10.56179/001c.117717
Melissa M. Rincon Sandoval, S. Pirro, Ricardo Betancur
{"title":"The Draft Genome Sequences of 63 Species of Catfish (Ariidae, Siluriformes)","authors":"Melissa M. Rincon Sandoval, S. Pirro, Ricardo Betancur","doi":"10.56179/001c.117717","DOIUrl":"https://doi.org/10.56179/001c.117717","url":null,"abstract":"We present genome sequences of 63 species of catfish from the Ariidae family. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"35 36","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-05-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141117468","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Draft Genome Sequences of 50 Salamander species (Caudata, Amphibia) 50 种蝾螈基因组序列草案（蝾螈科，两栖类）
Biodiversity genomes Pub Date : 2024-04-23 DOI: 10.56179/001c.116891
R. A. Pyron, S. Pirro, T. Hains, T. J. Colston, Edward A. Myers, Kyle A. O’Connell, David A. Beamer
{"title":"The Draft Genome Sequences of 50 Salamander species (Caudata, Amphibia)","authors":"R. A. Pyron, S. Pirro, T. Hains, T. J. Colston, Edward A. Myers, Kyle A. O’Connell, David A. Beamer","doi":"10.56179/001c.116891","DOIUrl":"https://doi.org/10.56179/001c.116891","url":null,"abstract":"We present partial genome sequences of 50 salamander species (Urodela) from 10 genera and 4 families. These span nearly the entire range of genome sizes in salamanders, from ~14–130GB, the latter of which is among the largest of all animal genomes. Only three salamander genomes were available to this point, from Ambystomatidae (one species) and Salamandridae (two species from two genera), to which we have added Amphiumidae (one species), Plethodontidae (45 species from 6 genera), Proteidae (one species), and Sirenidae (three species from two genera). These span ~140 million years of evolutionary divergence, leaving only Cryptobranchidae, Hynobiidae, and Rhyacotritonidae as salamander families without genome assemblies. These data should facilitate additional future work on speciation and genome evolution, both within Urodela and across Animalia.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"28 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140665847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 12 Species of Enteromius (Cyprinidae, Cypriniformes, Actinopteri) 12 种肠鲈鱼（鲤科，鲤形目，动翅目）的完整基因组序列
Biodiversity genomes Pub Date : 2024-04-19 DOI: 10.56179/001c.116676
P. Bragança, John P. Sullivan, S. Pirro, Albert Chakona
{"title":"The Complete Genome Sequences of 12 Species of Enteromius (Cyprinidae, Cypriniformes, Actinopteri)","authors":"P. Bragança, John P. Sullivan, S. Pirro, Albert Chakona","doi":"10.56179/001c.116676","DOIUrl":"https://doi.org/10.56179/001c.116676","url":null,"abstract":"We present the complete genome sequences of 12 species of Enteromius. Illumina sequencing was performed on genetic material from museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":" December","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140682640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 12 Species of Plants from the Yucatan Peninsula, Mexico. 墨西哥尤卡坦半岛 12 种植物的完整基因组序列。
Biodiversity genomes Pub Date : 2024-04-08 DOI: 10.56179/001c.116283
Y. Peña-Ramírez, Natalia Y. Labrín-Sotomayor, P. A. Becerra-Lucio, Hugo Ruiz-González, Norka M. Fortuny-Fernández, Fulgencio Alatorre-Cobos, S. Pirro
{"title":"The Complete Genome Sequences of 12 Species of Plants from the Yucatan Peninsula, Mexico.","authors":"Y. Peña-Ramírez, Natalia Y. Labrín-Sotomayor, P. A. Becerra-Lucio, Hugo Ruiz-González, Norka M. Fortuny-Fernández, Fulgencio Alatorre-Cobos, S. Pirro","doi":"10.56179/001c.116283","DOIUrl":"https://doi.org/10.56179/001c.116283","url":null,"abstract":"We present the complete genome sequences of 12 species of plants from Campeche, Mexico and the greater Yucatan Peninsula: Agave americana, Agave angustifolia, Agave fourcroydes, Agave karwinskii, Agave potatorum, Agave tequiliana, Annona squamosa, Cedrela odorata, Pouteria campechiana, Pouteria glomerata, Trichilia hirta and Trichilia minutiflora.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"226 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140730383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Ceratonia siliqua L. (Fabaceae, Fabales), Carob 角豆树（Ceratonia siliqua L.）（豆科，Fabales）的完整基因组序列
Biodiversity genomes Pub Date : 2024-01-06 DOI: 10.56179/001c.92058
Omar Chlyah, Meriem Alaoui Mdarhi, Douae El Ghoubali, Michael Kieras, S. Pirro, Hassan Ghazal
{"title":"The Complete Genome Sequence of Ceratonia siliqua L. (Fabaceae, Fabales), Carob","authors":"Omar Chlyah, Meriem Alaoui Mdarhi, Douae El Ghoubali, Michael Kieras, S. Pirro, Hassan Ghazal","doi":"10.56179/001c.92058","DOIUrl":"https://doi.org/10.56179/001c.92058","url":null,"abstract":"We present the whole genome sequence of Ceratonia siliqua L. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR24502586) and assembled genome (JASKGM000000000).","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"29 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139535825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Haemulon aurolineatum (Haemulidae, Lutjaniformes), the Tomtate Grunt. Haemulon aurolineatum（Haemulidae，Lutjaniformes）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-11-10 DOI: 10.56179/001c.125785
Carmen D Pedraza Marron, Stacy Pirro, Ricardo Betancur
{"title":"The Complete Genome Sequence of Haemulon aurolineatum (Haemulidae, Lutjaniformes), the Tomtate Grunt.","authors":"Carmen D Pedraza Marron, Stacy Pirro, Ricardo Betancur","doi":"10.56179/001c.125785","DOIUrl":"10.56179/001c.125785","url":null,"abstract":"<p><p>We present the whole genome sequence of Haemulon aurolineatum. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR28478403) and assembled genome (JBCAUF000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11567149/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142649347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 34 Brush-footed Butterflies (Nymphalidae, Lepidoptera). 34 种毛刷足蝶（蛱蝶科，鳞翅目）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-11-10 DOI: 10.56179/001c.125775
Douae El Ghoubali, Stacy Pirro, Hassan Ghazal
{"title":"The Complete Genome Sequences of 34 Brush-footed Butterflies (Nymphalidae, Lepidoptera).","authors":"Douae El Ghoubali, Stacy Pirro, Hassan Ghazal","doi":"10.56179/001c.125775","DOIUrl":"10.56179/001c.125775","url":null,"abstract":"<p><p>We present complete genome sequences of 34 butterflies in the Nymphalidae family.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11565525/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142649349","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 7 Species of Nudibranchs (Nudibranchia, Gastropoda). 7 种海蛞蝓（海蛞蝓，腹足纲）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-05-28 DOI: 10.56179/001c.118546
Lina M Raubold, Rebecca N Lopez-Anido, Stacy Pirro, Ángel Valdés, Jessica A Goodheart
{"title":"The Complete Genome Sequences of 7 Species of Nudibranchs (Nudibranchia, Gastropoda).","authors":"Lina M Raubold, Rebecca N Lopez-Anido, Stacy Pirro, Ángel Valdés, Jessica A Goodheart","doi":"10.56179/001c.118546","DOIUrl":"10.56179/001c.118546","url":null,"abstract":"<p><p>We present genome sequences of 7 species of sea slugs from 4 genera. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11279692/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141790173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 30 Species of Falcons (Falconiformes, Aves). 30 种猎鹰（隼形目，鸟类）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-12-19 DOI: 10.56179/001c.127653
Therese Catanach, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 30 Species of Falcons (Falconiformes, Aves).","authors":"Therese Catanach, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.127653","DOIUrl":"10.56179/001c.127653","url":null,"abstract":"<p><p>We present the complete genome sequences of 30 species of falcons. Illumina sequencing was performed on genetic material from wild-caught specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11687367/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142916389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula. 两种十七年蝉的完整基因组序列：Magicicada septendecim 和 Magicicada septendecula。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-05-06 DOI: 10.56179/001c.117365
Harold B White, Stacy Pirro
{"title":"The complete genome sequences of two species of seventeen-year cicadas: <i>Magicicada septendecim</i> and <i>Magicicada septendecula</i>.","authors":"Harold B White, Stacy Pirro","doi":"10.56179/001c.117365","DOIUrl":"10.56179/001c.117365","url":null,"abstract":"<p><p>The genus <i>Magicicada</i> (Hemiptera: Cicadidae) includes the periodical cicadas of Eastern North America. Spending the majority of their long lives underground, the adult cicadas emerge every 13 or 17 years to spend 4-6 weeks as adult to mate. We present the whole genome sequences of two species of 17-year cicadas, <i>Magicicada septendecim</i> and <i>Magicicada septendecula</i>. The reads were assembled by a de novo method followed by alignments to related species. Annotation was performed by GeneMark-ES. The raw and assembled data is available via NCBI Short Read Archive and Assembly databases.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11105696/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141072428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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