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The Complete Genome Sequence of Ceratonia siliqua L. (Fabaceae, Fabales), Carob 角豆树（Ceratonia siliqua L.）（豆科，Fabales）的完整基因组序列
Biodiversity genomes Pub Date : 2024-01-06 DOI: 10.56179/001c.92058
Omar Chlyah, Meriem Alaoui Mdarhi, Douae El Ghoubali, Michael Kieras, S. Pirro, Hassan Ghazal
{"title":"The Complete Genome Sequence of Ceratonia siliqua L. (Fabaceae, Fabales), Carob","authors":"Omar Chlyah, Meriem Alaoui Mdarhi, Douae El Ghoubali, Michael Kieras, S. Pirro, Hassan Ghazal","doi":"10.56179/001c.92058","DOIUrl":"https://doi.org/10.56179/001c.92058","url":null,"abstract":"We present the whole genome sequence of Ceratonia siliqua L. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR24502586) and assembled genome (JASKGM000000000).","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139535825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 7 Species of Nudibranchs (Nudibranchia, Gastropoda). 7 种海蛞蝓（海蛞蝓，腹足纲）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-05-28 DOI: 10.56179/001c.118546
Lina M Raubold, Rebecca N Lopez-Anido, Stacy Pirro, Ángel Valdés, Jessica A Goodheart
{"title":"The Complete Genome Sequences of 7 Species of Nudibranchs (Nudibranchia, Gastropoda).","authors":"Lina M Raubold, Rebecca N Lopez-Anido, Stacy Pirro, Ángel Valdés, Jessica A Goodheart","doi":"10.56179/001c.118546","DOIUrl":"10.56179/001c.118546","url":null,"abstract":"<p><p>We present genome sequences of 7 species of sea slugs from 4 genera. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11279692/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141790173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequences of two species of seventeen-year cicadas: Magicicada septendecim and Magicicada septendecula. 两种十七年蝉的完整基因组序列：Magicicada septendecim 和 Magicicada septendecula。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-05-06 DOI: 10.56179/001c.117365
Harold B White, Stacy Pirro
{"title":"The complete genome sequences of two species of seventeen-year cicadas: <i>Magicicada septendecim</i> and <i>Magicicada septendecula</i>.","authors":"Harold B White, Stacy Pirro","doi":"10.56179/001c.117365","DOIUrl":"10.56179/001c.117365","url":null,"abstract":"<p><p>The genus <i>Magicicada</i> (Hemiptera: Cicadidae) includes the periodical cicadas of Eastern North America. Spending the majority of their long lives underground, the adult cicadas emerge every 13 or 17 years to spend 4-6 weeks as adult to mate. We present the whole genome sequences of two species of 17-year cicadas, <i>Magicicada septendecim</i> and <i>Magicicada septendecula</i>. The reads were assembled by a de novo method followed by alignments to related species. Annotation was performed by GeneMark-ES. The raw and assembled data is available via NCBI Short Read Archive and Assembly databases.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11105696/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141072428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of seven species of sea slugs (Nudibranchia, Gastropoda, Mollusca). 七种海蛞蝓（裸鳃纲、腹足纲、软体动物）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-01-17 DOI: 10.56179/001c.92315
Jessica A Goodheart, Maryna P Lesoway, Stacy Pirro
{"title":"The Complete Genome Sequences of seven species of sea slugs (Nudibranchia, Gastropoda, Mollusca).","authors":"Jessica A Goodheart, Maryna P Lesoway, Stacy Pirro","doi":"10.56179/001c.92315","DOIUrl":"10.56179/001c.92315","url":null,"abstract":"<p><p>We present the complete genome sequences of seven species of sea slugs. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10811759/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139572309","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Genome Sequences of 118 Taxonomically Diverse Eukaryotes of the Salish Sea. 咸海 118 种分类学上不同的真核生物的基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-05-28 DOI: 10.56179/001c.118307
Eric Edsinger, Michael Kieras, Stacy Pirro
{"title":"The Genome Sequences of 118 Taxonomically Diverse Eukaryotes of the Salish Sea.","authors":"Eric Edsinger, Michael Kieras, Stacy Pirro","doi":"10.56179/001c.118307","DOIUrl":"10.56179/001c.118307","url":null,"abstract":"<p><p>We present the complete genome sequences of 118 taxonomically diverse eukaryotes from the Salish Sea. Illumina sequencing was performed on genetic material from wild-collected individuals. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11156190/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141285522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequence of the protogynous hermaphrodite North American annual killifish Millerichthys robustus (Rivulidae, Cyprinodontiformes). 原雌雄同体北美年鳉（Rivulidae, Cyprinodontiformes）的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-04-23 DOI: 10.56179/001c.116895
Omar Domínguez-Castanedo, Waldir M Berbel-Filho, Stacy Pirro, Sharon Valdez-Carbajal
{"title":"The complete genome sequence of the protogynous hermaphrodite North American annual killifish <i>Millerichthys robustus</i> (Rivulidae, Cyprinodontiformes).","authors":"Omar Domínguez-Castanedo, Waldir M Berbel-Filho, Stacy Pirro, Sharon Valdez-Carbajal","doi":"10.56179/001c.116895","DOIUrl":"10.56179/001c.116895","url":null,"abstract":"<p><p>The Mexican Rivulus, <i>Millerichthys robustus</i>, is an enigmatic species of seasonal killifish endemic of the Southeast Mexico that has changed paradigms on the evolution of annualism in killifishes. This species survives in ephemeral environments that experience a period of seasonal drought that causes the death of all adult fish. However, populations persist due to their drought-resistant embryos capable of arresting their development in diapause until the next the rainy season. <i>Millerichthys</i> evolved unique characteristics within annual killifishes as a functional sequential hermaphroditism, in which females change to males (protogynous) under perceived conditions of mate competition. Also, <i>M. robustus</i> express different color phenotypes in both sexes: five-color phenotypes continuously distributed in various perceptual units between yellow and red in males, and different number of ocelli disposed in caudal peduncle in females. The phylogenetic relationships of <i>M. robustus</i> revealed that it is a sister clade to two non-annual species found exclusively in Cuba (<i>Rivulus cylindraceus</i> and <i>Rivulus berovidesi</i>), indicating that the annual life cycle, through the acquisition of embryonic diapause, has evolved independently in this species. Here, we present the complete genome sequences for the North American annual killifish <i>Millerichthys robustus</i>. The raw data and assembled genome are available in GeneBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11082719/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140913556","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Chlorophonia sclateri (Fringillidae, Passeriformes), the Puerto Rican Euphonia. Chlorophonia sclateri (Fringillidae, Passeriformes)，波多黎各 Euphonia 的完整基因组序列。
Biodiversity genomes Pub Date : 2024-01-01 Epub Date: 2024-09-06 DOI: 10.56179/001c.123420
Sheylda N Diaz Mendez, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequence of <i>Chlorophonia sclateri</i> (Fringillidae, Passeriformes), the Puerto Rican Euphonia.","authors":"Sheylda N Diaz Mendez, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.123420","DOIUrl":"10.56179/001c.123420","url":null,"abstract":"<p><p>The Puerto Rican Euphonia (<i>Chlorophonia sclateri</i>) was recognized as an endemic species in 2023 based solely on morphological differences. A brightly plumaged finch that inhabits a variety of habitats, including lowland dry, scrub forests and shade-coffee plantations (Carlo et. al 2004). To provide molecular evidence for the genetic comparison of Antillean Euphonias, we present the whole genome sequence of <i>Chlorophonia sclateri</i>. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR28963854) and assembled genome (JBFPDU000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11414600/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142302313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Chyrsopelea ornata, Ornate Flying Snake 华丽飞蛇chrrsopelea ornata全基因组序列
Biodiversity genomes Pub Date : 2023-05-14 DOI: 10.56179/001c.75385
Didla Dinesh, Ishani Mitra, Soma Roy
{"title":"The Complete Genome Sequence of Chyrsopelea ornata, Ornate Flying Snake","authors":"Didla Dinesh, Ishani Mitra, Soma Roy","doi":"10.56179/001c.75385","DOIUrl":"https://doi.org/10.56179/001c.75385","url":null,"abstract":"Chrysopelea ornata, commonly known as the ornate flying snake, is a beautiful and unique species of snake found in Southeast Asia. This snake is famous for its ability to glide from tree to tree. The snake’s body is slender and long, with a characteristic pattern of black and yellow scales that give it a prominent appearance. The significant feature of the ornate flying snake is its ability to glide. This snake launches itself from a high branch and glide up to 100 meters through the air. The snake’s gliding ability is due to its unique physical features, including its elongated ribcage and flattened belly. By flattening its body, the snake can create a greater surface area, allowing it to stay aloft for longer periods. The snake also moves its body in an undulating motion, which generates lift and helps it maintain its balance. It is hunted and smuggled. Here we present you the Whole Genome Sequence of Chrysopelea ornata.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135188597","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Actias luna (Saturniidae, Lepidoptera), the luna moth. 月蛾(夜蛾科，鳞翅目)全基因组序列。
Biodiversity genomes Pub Date : 2023-05-01 DOI: 10.56179/001c.75356
Deborah A Triant, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Actias luna</i> (Saturniidae, Lepidoptera), the luna moth.","authors":"Deborah A Triant,&nbsp;Stacy Pirro","doi":"10.56179/001c.75356","DOIUrl":"https://doi.org/10.56179/001c.75356","url":null,"abstract":"<p><p><i>Actias luna</i>, the luna moth, is a Nearctic species in the family Saturniidae, the giant silk moths. Known for its large size, bright green wings and elongated tails, it is found in Eastern North America, from east of the Great Plains in the United States, and from Saskatchewan eastward through central Quebec to Nova Scotia in Canada. We present the complete genome sequence of this species. Raw read data and the assembled genome are available in Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10210935/pdf/nihms-1901695.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9520318","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Cymbopogon citratus (Poaceae, Poales), Lemon Grass. 柠檬草Cymbopogon citratus (Poales, Poales)的全基因组序列。
Biodiversity genomes Pub Date : 2023-04-01 DOI: 10.56179/001c.74871
Navajeet Chakravartty, Laslo Randowski, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Cymbopogon citratus</i> (Poaceae, Poales), Lemon Grass.","authors":"Navajeet Chakravartty,&nbsp;Laslo Randowski,&nbsp;Stacy Pirro","doi":"10.56179/001c.74871","DOIUrl":"https://doi.org/10.56179/001c.74871","url":null,"abstract":"<p><p><i>Cymbopogon citratus</i>, commonly known Lemon Grass, is a tropical plant native to Maritime Southeast Asia. The species has simple, bluish-green leaves with linear white margins. <i>Cymbopogon citratus</i> is abundant in the Philippines and Indonesia where it is traditionally used in cooking. The dried leaves can also be brewed into a tea, either alone or as a flavoring in other teas. We present the complete genome sequence of this species. The raw data and assembled sequences are available in Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10194061/pdf/nihms-1898055.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9502844","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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