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Biodiversity genomes最新文献

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The Complete Genome Sequence of Portunus pelagicus (Portunidae, Decapoda), the Blue Swimming Crab. 蓝游蟹（Portunus pelagicus）（Portunidae，十足目）的完整基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-11-20 DOI: 10.56179/001c.91279
Demian A Willette, Stacy Pirro, Luz R Romena, Mudjekeewis D Santos
{"title":"The Complete Genome Sequence of <i>Portunus pelagicus</i> (Portunidae, Decapoda), the Blue Swimming Crab.","authors":"Demian A Willette, Stacy Pirro, Luz R Romena, Mudjekeewis D Santos","doi":"10.56179/001c.91279","DOIUrl":"https://doi.org/10.56179/001c.91279","url":null,"abstract":"<p><p><i>Portunus pelagicus</i> is a large crab found in the Indo-Pacific. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR25655135) and assembled genome (JAWWMC000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10745231/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139032853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of Iris sibirica and Iris virginica (Iridaceae, Asparagales). sibirica和virginica(鸢尾科，芦笋科)的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 DOI: 10.56179/001c.72791
Kuk-Jeong Chin, Stacy Pirro
{"title":"The Complete Genome Sequences of <i>Iris sibirica</i> and <i>Iris virginica</i> (Iridaceae, Asparagales).","authors":"Kuk-Jeong Chin,&nbsp;Stacy Pirro","doi":"10.56179/001c.72791","DOIUrl":"https://doi.org/10.56179/001c.72791","url":null,"abstract":"<p><p>We present the complete genome sequences of <i>Iris sibirica</i> and <i>Iris virginica</i>. Illumina sequencing was performed on genetic material from individual cultivated specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10019338/pdf/nihms-1881127.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9343285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
The Complete Genome Sequence of Sarcoramphus papa (Cathartidae), the King Vulture. 秃鹰王的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 DOI: 10.56179/001c.68132
Therese A Catanach, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Sarcoramphus papa</i> (Cathartidae), the King Vulture.","authors":"Therese A Catanach,&nbsp;Stacy Pirro","doi":"10.56179/001c.68132","DOIUrl":"https://doi.org/10.56179/001c.68132","url":null,"abstract":"<p><p><i>Sarcoramphus papa</i> is a New World Vulture found predominantly in tropical lowland forests stretching from southern Mexico to northern Argentina. We present the whole genome sequence of this species. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR19167646) and assembled genome (GCA_027580115).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/fa/30/nihms-1868244.PMC9897284.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9342099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Genome Sequences of 17 Species of Carnivorous Plants. 17种食肉植物的基因组序列分析。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-11-14 DOI: 10.56179/001c.90164
Carl Procko, Joanne Chory, Stacy Pirro
{"title":"The Genome Sequences of 17 Species of Carnivorous Plants.","authors":"Carl Procko, Joanne Chory, Stacy Pirro","doi":"10.56179/001c.90164","DOIUrl":"10.56179/001c.90164","url":null,"abstract":"<p><p>We present the genome sequences of 17 species of carnivorous plants. Illumina sequencing was performed on genetic material from cultivated individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10662931/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138292547","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 5 Species of Sardinella (Clupeidae, Clupeiformes). 5 种沙丁鱼（Clupeidae, Clupeiformes）的完整基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 Epub Date: 2023-11-20 DOI: 10.56179/001c.91277
Demian A Willette, Stacy Pirro, Rey C Thomas, Mudjekeewis D Santos
{"title":"The Complete Genome Sequences of 5 Species of Sardinella (Clupeidae, Clupeiformes).","authors":"Demian A Willette, Stacy Pirro, Rey C Thomas, Mudjekeewis D Santos","doi":"10.56179/001c.91277","DOIUrl":"10.56179/001c.91277","url":null,"abstract":"<p><p>We present the complete genome sequences of 5 species of <i>Sardinella</i>. Illumina sequencing was performed on genetic material from wild-caught specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10766431/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139099313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 87 Species of Hawks (Accipitriformes, Aves). 87种鹰(鹰形目，鸟类)的全基因组序列。
Biodiversity genomes Pub Date : 2023-01-01 DOI: 10.56179/001c.67877
Therese A Catanach, Stacy Pirro
{"title":"The Complete Genome Sequences of 87 Species of Hawks (Accipitriformes, Aves).","authors":"Therese A Catanach,&nbsp;Stacy Pirro","doi":"10.56179/001c.67877","DOIUrl":"https://doi.org/10.56179/001c.67877","url":null,"abstract":"Biodiversity Genomes We present the complete genome sequences of 87 species of hawks from 39 genera. Illumina sequencing was performed on genetic material from single individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/8e/fc/nihms-1864217.PMC9851080.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 94 Species of Parrots (Psittaciformes, Aves). 94种鹦鹉(鹦鹉形目，鸟类)的全基因组序列。
Biodiversity genomes Pub Date : 2022-11-01 DOI: 10.56179/001c.40338
Taylor Hains, Stacy Pirro, Kathleen O'Neill, Jafet Valez, Nancy Speed, Susan Clubb, Taras Oleksyk, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 94 Species of Parrots (Psittaciformes, Aves).","authors":"Taylor Hains,&nbsp;Stacy Pirro,&nbsp;Kathleen O'Neill,&nbsp;Jafet Valez,&nbsp;Nancy Speed,&nbsp;Susan Clubb,&nbsp;Taras Oleksyk,&nbsp;John Bates,&nbsp;Shannon Hackett","doi":"10.56179/001c.40338","DOIUrl":"https://doi.org/10.56179/001c.40338","url":null,"abstract":"<p><p>We present the complete genome sequences of 94 species of parrots from 40 genera. Illumina sequencing was performed on genetic material from single individuals. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data is publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9671223/pdf/nihms-1848461.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341750","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Ginkgo biloba (Ginkgoaceae, Ginkgoales), the Maidenhair Tree. 银杏科(Ginkgoaceae, Ginkgoales)的全基因组序列。
Biodiversity genomes Pub Date : 2022-11-01 DOI: 10.56179/001c.56302
Nihal Habib, Stacy Pirro, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Ginkgo biloba</i> (Ginkgoaceae, Ginkgoales), the Maidenhair Tree.","authors":"Nihal Habib,&nbsp;Stacy Pirro,&nbsp;Hassan Ghazal","doi":"10.56179/001c.56302","DOIUrl":"https://doi.org/10.56179/001c.56302","url":null,"abstract":"<p><p><i>Ginkgo biloba</i> is the only extant member of the order Ginkgoales. Fossils similar to this species extend back to the Middle Jurassic approximately 170 million years ago. Ginkgo trees are native to deciduous forests in China but are cultivated throughout North America, Europe, and Asia. We present the whole genome sequence of this species. Illumina sequencing was performed on a leaf tissue sample from a single cultivated plant. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR22349630) and Genome Assembly (JANKJI000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9731352/pdf/nihms-1854738.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9397713","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Chlorophytum comosum (Asparagaceae, Asparagales), the Spider Plant. 蜘蛛植物吊兰(天门冬科)全基因组序列研究。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.55588
Abdellah Idrissi Azami, Kathleen O'Neill, Stacy Pirro, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Chlorophytum comosum</i> (Asparagaceae, Asparagales), the Spider Plant.","authors":"Abdellah Idrissi Azami,&nbsp;Kathleen O'Neill,&nbsp;Stacy Pirro,&nbsp;Hassan Ghazal","doi":"10.56179/001c.55588","DOIUrl":"https://doi.org/10.56179/001c.55588","url":null,"abstract":"<p><p><i>Chlorophytum comosum</i> is a species of evergreen perennial flowering plant native to tropical and southern Africa but has become naturalized in other parts of the world, including western Australia and Bangladesh. We present the whole genome sequence of <i>Chlorophytum comosum</i>. Illumina paired-end reads were assembled by a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR11638255) and assembled genome (GCA_025212335).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9681034/pdf/nihms-1850888.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334349","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequences of Erythroxylum coca and Erythroxylum novogranatense. 古柯红木和新granatense红木的全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.39776
Dawson White, Lyndel Meinhardt, Bryan Bailey, Stacy Pirro
{"title":"The complete genome sequences of <i>Erythroxylum coca</i> and <i>Erythroxylum novogranatense</i>.","authors":"Dawson White,&nbsp;Lyndel Meinhardt,&nbsp;Bryan Bailey,&nbsp;Stacy Pirro","doi":"10.56179/001c.39776","DOIUrl":"https://doi.org/10.56179/001c.39776","url":null,"abstract":"<p><p>The flowering plant genus <i>Erythroxylum</i> contains approximately 300 species, including the economically and socially consequential crops called coca. We present the genome sequences of <i>Erythroxylum coca</i> and <i>E. novogranatense</i>, two cultigens produced for medicinal and quotidian use in the Andes and Amazon regions of South America, as well as the international cocaine industry. Sequencing was performed on an Illumina X-Ten platform, and reads were assembled by a <i>de novo</i> method followed by finishing via comparison with several species from the same genus. The BioProject, raw and assembled data can be accessed in GenBank for <i>E. coca</i> (PRJNA676123; JAJMLV000000000) and <i>E. novogranatense</i> (PRJNA675212; JAJKBF000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/20/0b/nihms-1847752.PMC9648698.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9711203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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