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The Complete Genome Sequence of Telfairia occidentalis, the African Fluted Pumpkin. 非洲有槽南瓜(Telfairia occidentalis)的全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.40155
Stacy Pirro, Olawole Obembe
{"title":"The Complete Genome Sequence of <i>Telfairia occidentalis</i>, the African Fluted Pumpkin.","authors":"Stacy Pirro,&nbsp;Olawole Obembe","doi":"10.56179/001c.40155","DOIUrl":"https://doi.org/10.56179/001c.40155","url":null,"abstract":"<p><p><i>Telfairia occidentalis</i> is a tropical vine grown in West Africa as a leaf vegetable and for its edible seeds. We present the whole genome sequence of this species. Illumina sequencing was performed on a leaf tissue sample from a single cultivated plant. The reads were assembled using a <i>de novo</i> method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR14834394) and Genome Assembly (JAOANK000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9662784/pdf/nihms-1847750.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9711205","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 38 Species of Elephantfishes (Mormyridae, Osteoglossiformes). 38 种象鼻鱼（Mormyridae, Osteoglossiformes）的完整基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 Epub Date: 2022-11-21 DOI: 10.56179/001c.56077
Rose Peterson, John Sullivan, Stacy Pirro
{"title":"The Complete Genome Sequences of 38 Species of Elephantfishes (Mormyridae, Osteoglossiformes).","authors":"Rose Peterson, John Sullivan, Stacy Pirro","doi":"10.56179/001c.56077","DOIUrl":"10.56179/001c.56077","url":null,"abstract":"<p><p>We present the complete genome sequences of 38 species of elephantfishes from 20 genera. Illumina sequencing was performed on genetic material from single wild-caught individuals. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data is publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718373/pdf/nihms-1852714.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequences of 56 Erythroxylum species. 56种红木属植物全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.40336
Dawson M White, Lyndel Meinhard, Bryan Bailey, Stacy Pirro
{"title":"The complete genome sequences of 56 <i>Erythroxylum</i> species.","authors":"Dawson M White,&nbsp;Lyndel Meinhard,&nbsp;Bryan Bailey,&nbsp;Stacy Pirro","doi":"10.56179/001c.40336","DOIUrl":"https://doi.org/10.56179/001c.40336","url":null,"abstract":"<p><p>We present the whole genome sequences of 56 wild <i>Erythroxylum</i> species from Africa, China, and the American tropics. Deep Illumina sequencing was performed on a single leaf of each voucher. We de novo assembled sequence reads and then identified and used conserved regions across all preassemblies join contigs in a finishing step. The raw and assembled data is publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9728009/pdf/nihms-1848463.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequences of three species of Mountain Avens (Dryas, Rosaceae). 山鸦属(杉木属，蔷薇科)3种全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.40366
Dawson White, Stacy Pirro
{"title":"The complete genome sequences of three species of Mountain Avens (<i>Dryas</i>, Rosaceae).","authors":"Dawson White,&nbsp;Stacy Pirro","doi":"10.56179/001c.40366","DOIUrl":"https://doi.org/10.56179/001c.40366","url":null,"abstract":"<p><p>We present the whole genome sequences of <i>Dryas alaskensis, D. ajanensis</i>, and <i>D. integrifolia</i> from plants collected from interior Alaska. We performed deep Illumina sequencing of a single leaf of each voucher. The sequence reads were then <i>de novo</i> assembled and conserved regions across all preassemblies were used to join contigs in a finishing step. The raw and assembled data is publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9728003/pdf/nihms-1848981.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334829","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Amorphophallus titanum, the Corpse Flower. 尸花魔芋(Amorphophallus titanum)全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.37841
Linda Frisse, Marc A Martinez, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Amorphophallus titanum,</i> the Corpse Flower.","authors":"Linda Frisse,&nbsp;Marc A Martinez,&nbsp;Stacy Pirro","doi":"10.56179/001c.37841","DOIUrl":"https://doi.org/10.56179/001c.37841","url":null,"abstract":"<p><p>The Corpse Flower, or Titan Arum (<i>Amorphophallus titanum</i>) is a flowering plant in the family Araceae. endemic to a limited range in the rainforests of Sumatra, Indonesia. It is notable for two reasons: it produces the world's largest known unbranched flower, and it produces a strong odor of rotting meat to attract pollinators. We present the whole genome sequence of this species. A total of 335,712,220 paired-end Illumina reads consisting of 100.7G bases were obtained by Illumina sequencing the leaf tissue of a single individual. The reads were assembled by a <i>de novo</i> method followed by contig extension using related species as references. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR11565159) and genome assembly (GCA_024336825).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/30/ef/nihms-1847807.PMC9677611.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341103","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Conuropsis carolinensis, the Carolina Parakeet. 卡罗莱纳长尾小鹦鹉的全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 Epub Date: 2022-12-30 DOI: 10.56179/001c.66227
Taylor Hains, Stacy Pirro, John M Bates, Shannon J Hackett
{"title":"The Complete Genome Sequence of <i>Conuropsis carolinensis</i>, the Carolina Parakeet.","authors":"Taylor Hains, Stacy Pirro, John M Bates, Shannon J Hackett","doi":"10.56179/001c.66227","DOIUrl":"10.56179/001c.66227","url":null,"abstract":"<p><p>The Carolina Parakeet (<i>Conuropsis carolinensis</i>) is an extinct species of parrot that was native to the eastern, midwest, and plains regions of the United States. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR21023482) and assembled genome (JAOBYI000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/19/ca/nihms-1862356.PMC9830951.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9696665","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of the Simalia boeleni, the Boelen's Python. 博伦蟒蛇的全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.38128
Benson H Morrill, H Patrick MacKnight, Ari R Flagle, Stacy Pirro
{"title":"The Complete Genome Sequence of the <i>Simalia boeleni,</i> the Boelen's Python.","authors":"Benson H Morrill,&nbsp;H Patrick MacKnight,&nbsp;Ari R Flagle,&nbsp;Stacy Pirro","doi":"10.56179/001c.38128","DOIUrl":"https://doi.org/10.56179/001c.38128","url":null,"abstract":"<p><p>The Boelen's Python (<i>Simalia boeleni</i>) is a python endemic to the mountains of New Guinea. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR19167501) and assembled genome (JANKYG000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9681057/pdf/nihms-1847756.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequence of Androctonus mauritanicus, the Moroccan black thick-tailed scorpion. 摩洛哥黑厚尾蝎的完整基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.55548
Douae El Ghoubali, Stacy Pirro, Sofia Sehli, Mohammed Merzouki, Najib Al Idrissi, Lahcen Belyamani, Salsabil Hamdi, Hassan Ghazal
{"title":"The complete genome sequence of <i>Androctonus mauritanicus,</i> the Moroccan black thick-tailed scorpion.","authors":"Douae El Ghoubali,&nbsp;Stacy Pirro,&nbsp;Sofia Sehli,&nbsp;Mohammed Merzouki,&nbsp;Najib Al Idrissi,&nbsp;Lahcen Belyamani,&nbsp;Salsabil Hamdi,&nbsp;Hassan Ghazal","doi":"10.56179/001c.55548","DOIUrl":"https://doi.org/10.56179/001c.55548","url":null,"abstract":"<p><p><i>Androctonus mauritanicus</i> is a large scorpion indigenous to North Africa. Notable for its extremely potent venom, it is responsible for several human deaths a year. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single wild-caught individual. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR10738938) and Assembly (GCA_011317285).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/1e/21/nihms-1850904.PMC9681039.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334351","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Polystichum acrostichoides (Dryopteridaceae, Polypodiales). 毛蕨科蓼科蓼属植物的全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.55604
Sana Raoui, Stacy Pirro, Saaïd Amzazi, Hassan Ghazal
{"title":"The Complete Genome Sequence of <i>Polystichum acrostichoides</i> (Dryopteridaceae, Polypodiales).","authors":"Sana Raoui,&nbsp;Stacy Pirro,&nbsp;Saaïd Amzazi,&nbsp;Hassan Ghazal","doi":"10.56179/001c.55604","DOIUrl":"https://doi.org/10.56179/001c.55604","url":null,"abstract":"<p><p><i>Polystichum acrostichoides</i> is a perennial, evergreen fern, commonly found in woodlands, stream banks, and rocky slopes in eastern North America. We present the whole genome sequence of this species. Illumina sequencing was performed on a leaf tissue sample from a single plant collected in Maryland, USA. The reads were assembled using a <i>de novo</i> method followed by a finishing step using series of references from related species. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR18053988) and Genome Assembly (JAOYMV000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/cc/dc/nihms-1850908.PMC9681033.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Erigeron philadelphicus, the Philadelphia Fleabane. philadelphicus (Erigeron philadelphicus)全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.38099
Amina Jackson, Laslo Randowski, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Erigeron philadelphicus</i>, the Philadelphia Fleabane.","authors":"Amina Jackson,&nbsp;Laslo Randowski,&nbsp;Stacy Pirro","doi":"10.56179/001c.38099","DOIUrl":"https://doi.org/10.56179/001c.38099","url":null,"abstract":"<p><p>The Philadelphia Fleabane (<i>Erigeron philadelphicus</i>) is a common flower across North America, growing along roadsides and in fields and woodlands. Each plant has 3 to 35 small daisy-like flowers at the top of the plant. Flowers are 0.5 - 0.8\" across, with 150 or more pink to white thread-like petals and a yellow center disk. We present the whole genome sequence of this species. Illumina sequencing was performed on a single leaf from a wild-collected plant. The reads were assembled using a <i>de novo</i> method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR13004263) and Assembly (GCA_024320915).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9681032/pdf/nihms-1847761.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334348","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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