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Biodiversity genomes最新文献

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The Complete Genome Sequences of 26 Species of Sri Lankan Snakes. 26种斯里兰卡蛇的全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-04-02 DOI: 10.56179/001c.133783
Ruchira Somaweera, Stacy Pirro, R Alexander Pyron
{"title":"The Complete Genome Sequences of 26 Species of Sri Lankan Snakes.","authors":"Ruchira Somaweera, Stacy Pirro, R Alexander Pyron","doi":"10.56179/001c.133783","DOIUrl":"10.56179/001c.133783","url":null,"abstract":"<p><p>We present the complete genome sequences of 26 species of snakes from Sri Lanka, including 12 taxa endemic to the island. Illumina sequencing was performed on genetic material from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12014188/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144065417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 64 Species of Amphibians. 64种两栖动物全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-03-26 DOI: 10.56179/001c.133559
Timothy J Colston, Stacy Pirro, R Alexander Pyron
{"title":"The Complete Genome Sequences of 64 Species of Amphibians.","authors":"Timothy J Colston, Stacy Pirro, R Alexander Pyron","doi":"10.56179/001c.133559","DOIUrl":"10.56179/001c.133559","url":null,"abstract":"<p><p>We present the complete genome sequences of 64 species of amphibians (61 Anurans, 2 Caudates and 1 Caecilian) including complete genomes from four type specimens. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12017340/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144035890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequences of 12 species of Percopsiformes. 12种过似形目的全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-03-27 DOI: 10.56179/001c.133607
Matthew L Niemiller, Pamela B Hart, Stacy Pirro, Dahiana Arcila
{"title":"The complete genome sequences of 12 species of Percopsiformes.","authors":"Matthew L Niemiller, Pamela B Hart, Stacy Pirro, Dahiana Arcila","doi":"10.56179/001c.133607","DOIUrl":"10.56179/001c.133607","url":null,"abstract":"<p><p>We present complete genome sequences of 12 species of Percopsiformes.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12007890/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143993655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 11 Species of Kingbirds (Tyrannus, Tyrannidae, Passeriformes). 11种王鸟（王鸟目，王鸟科，王鸟目）的全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-02-13 DOI: 10.56179/001c.129593
Alexander Worm, Than Boves, Stacy Pirro, Andrew Sweet
{"title":"The Complete Genome Sequences of 11 Species of Kingbirds (Tyrannus, Tyrannidae, Passeriformes).","authors":"Alexander Worm, Than Boves, Stacy Pirro, Andrew Sweet","doi":"10.56179/001c.129593","DOIUrl":"10.56179/001c.129593","url":null,"abstract":"<p><p>We present the complete genome sequences of 11 species of kingbirds. Illumina sequencing was performed on genetic material from wild-caught and museum specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11996203/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144057854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The complete genome sequence of the Acestrorhamphid Psalidodon fasciatus. 篇二：蝴蝶结沙蚕全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-11-11 DOI: 10.56179/001c.147128
Luz E De la Ossa-Guerra, Stacy Pirro, Roberto F Artoni, Waldir M Berbel-Filho
{"title":"The complete genome sequence of the Acestrorhamphid <i>Psalidodon fasciatus</i>.","authors":"Luz E De la Ossa-Guerra, Stacy Pirro, Roberto F Artoni, Waldir M Berbel-Filho","doi":"10.56179/001c.147128","DOIUrl":"10.56179/001c.147128","url":null,"abstract":"<p><p>We present the first genome assembly of <i>Psalidodon fasciatus</i>, a rheophilic fish recently classified within Acestrorhamphidae and distributed across major South American river basins. Known for its karyotypic diversity and cryptic speciation potential, <i>P. fasciatus</i> was sequenced using Illumina Hi-Seq and assembled with SPAdes and Zanfona, resulting in 471,706 scaffolds at 60× coverage. The assembled genome is available in GenBank (Assembly ID: ASM5207532v1) and provides a valuable resource for evolutionary and taxonomic studies in Brazilian ichthyofauna.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12721857/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145822171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 20 Species of African Tetras and Relatives of Families Alestidae, Hepsetidae, and Lepidarchidae (Teleostei: Characiformes). 20种非洲田鼠及田鼠科、田鼠科、鳞翅目田鼠科近缘种的全基因组序列研究。
Biodiversity genomes Pub Date : 2025-01-01 DOI: 10.56179/001c.128235
Bruno F Melo, Stacy Pirro, Melanie L J Stiassny
{"title":"The Complete Genome Sequences of 20 Species of African Tetras and Relatives of Families Alestidae, Hepsetidae, and Lepidarchidae (Teleostei: Characiformes).","authors":"Bruno F Melo, Stacy Pirro, Melanie L J Stiassny","doi":"10.56179/001c.128235","DOIUrl":"10.56179/001c.128235","url":null,"abstract":"<p><p>We present the complete genome sequences of 20 species of African tetras, robbers, and tigerfishes in the families Alestidae, Hepsetidae, and Lepidarchidae. Illumina sequencing was performed on genetic material from wild-caught and aquarium specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via GenBank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11801383/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143366896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 22 Species of Owls (Strigiformes, Aves). 22种猫头鹰（鹰形目，鸟类）的全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-01-10 DOI: 10.56179/001c.128167
Taylor Hains, Therese Catanach, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 22 Species of Owls (Strigiformes, Aves).","authors":"Taylor Hains, Therese Catanach, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.128167","DOIUrl":"10.56179/001c.128167","url":null,"abstract":"<p><p>We present the complete genome sequences of 22 species of owls. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11741190/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017252","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of Five Species of Vipers (Viperidae, Squamata). 五种毒蛇（蝰科，鳞目）的全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-02-13 DOI: 10.56179/001c.129595
Abdellah Idrissi Azami, Stacy Pirro, Salsabil Hamdi, Najib Al Idrissi, Noursaid Tligui, Hassan Ghazal
{"title":"The Complete Genome Sequences of Five Species of Vipers (Viperidae, Squamata).","authors":"Abdellah Idrissi Azami, Stacy Pirro, Salsabil Hamdi, Najib Al Idrissi, Noursaid Tligui, Hassan Ghazal","doi":"10.56179/001c.129595","DOIUrl":"10.56179/001c.129595","url":null,"abstract":"<p><p>We present the complete genome sequences of five species of vipers: <i>Agkistrodon piscivorus, Crotalus aquilus, Crotalus enyo, Crotalus mitchellii, and Crotalus viridis</i>. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The data is publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11951420/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143756188","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome of Three At-Risk Florida Butterflies: Cyclargus thomasi bethunebakeri, Eumaeus atala and Heraclides ponceana. 三种濒临灭绝的佛罗里达蝴蝶的全基因组：托马西圆蝶、阿塔拉绿蝶和蓬西黑斑蝶。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-09-26 DOI: 10.56179/001c.144799
Deborah A Triant, Stacy Pirro, Akito Y Kawahara, Jaret C Daniels
{"title":"The Complete Genome of Three At-Risk Florida Butterflies: <i>Cyclargus thomasi bethunebakeri, Eumaeus atala</i> and <i>Heraclides ponceana</i>.","authors":"Deborah A Triant, Stacy Pirro, Akito Y Kawahara, Jaret C Daniels","doi":"10.56179/001c.144799","DOIUrl":"10.56179/001c.144799","url":null,"abstract":"<p><p>We present short-read genome assemblies of three butterfly species native to the state of Florida: the Atala butterfly (<i>Eumaeus atala</i>), the Miami blue (<i>Cyclargus thomasi bethunebakeri</i>), and the Schaus' swallowtail (<i>Heraclides ponceana</i>). All species are of conservation concern with the latter two listed as federally endangered. Genome assemblies recovered 77-92% of single-copy orthologous insect genes, providing a valuable resource for advancing lepidopteran genomic research.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12499368/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145245332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of Halophila stipulacea and Syringodium filiforme: Advancing Genomic Resources for two Tropical Caribbean Seagrasses. 热带加勒比地区两种海草的基因组资源研究进展：托叶盐藻和丝状丁香的全基因组序列。
Biodiversity genomes Pub Date : 2025-01-01 Epub Date: 2025-05-20 DOI: 10.56179/001c.138183
Kelcie L Chiquillo, Stacy Pirro, Demian A Willette
{"title":"The Complete Genome Sequences of <i>Halophila stipulacea</i> and <i>Syringodium filiforme</i>: Advancing Genomic Resources for two Tropical Caribbean Seagrasses.","authors":"Kelcie L Chiquillo, Stacy Pirro, Demian A Willette","doi":"10.56179/001c.138183","DOIUrl":"10.56179/001c.138183","url":null,"abstract":"<p><p>High-quality genomes are rapidly increasing across seagrasses. However, it remains limited for tropical seagrasses of the Hydrocharticae family, with most research focused on temperate seagrasses such as <i>Posidonia</i> spp. and <i>Zostera</i> spp. We present the complete genome sequences of two species of tropical Caribbean seagrasses, <i>Syringrodium filiforme</i> and <i>Halophila stipulacea</i>. Illumina sequencing was performed on genetic material from wild-collected specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank. These genomes will be useful for comparison studies, specifically studying adaptations linked to invasion success. Furthermore, <i>H. stipulacea</i> is the world's most invasive seagrass, colonizing new habitats in the Mediterranean and Caribbean Seas where it can transform native coastal ecosystems. This work expands on seagrass research efforts, highlighting the power of long-read assemblies to retrieve high-quality genomes.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12121952/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144181376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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