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The Complete Genome Sequence of Protonotaria citrea, the Prothonotary Warbler. 原翅莺(Protonotaria citrea)全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.38920
Nicholas D Antonson, Mark E Hauber, Wendy M Schelsky, Hannah M Scharf, Lesley Bulluck, Catherine Viverette, Stacy Pirro, Than J Boves
{"title":"The Complete Genome Sequence of <i>Protonotaria citrea,</i> the Prothonotary Warbler.","authors":"Nicholas D Antonson,&nbsp;Mark E Hauber,&nbsp;Wendy M Schelsky,&nbsp;Hannah M Scharf,&nbsp;Lesley Bulluck,&nbsp;Catherine Viverette,&nbsp;Stacy Pirro,&nbsp;Than J Boves","doi":"10.56179/001c.38920","DOIUrl":"https://doi.org/10.56179/001c.38920","url":null,"abstract":"The Prothonotary Warbler (Protonotaria citrea) is a nearctic-neotropical migratory songbird that breeds in forested swamps and riparian areas in the eastern-central United States and southern Ontario. It is the sole eastern North American wood-warbler that nests in cavities, the only species in the genus Protonotaria, and is one of the few hole-nesting hosts of the Brown-headed Cowbird (Molothrus ater), an obligate brood parasite. We present the whole genome sequence of this wood-warbler species. Illumina sequencing was performed on a genetic sample from a single female individual. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR19579445) and Assembly (JAOYNP000000000).","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9645680/pdf/nihms-1846748.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9711204","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Morelia viridis, the Green Tree Python. 绿树巨蟒绿纹莫雷利亚全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.66204
Benson H Morrill, Ian S Bessell, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Morelia viridis</i>, the Green Tree Python.","authors":"Benson H Morrill,&nbsp;Ian S Bessell,&nbsp;Stacy Pirro","doi":"10.56179/001c.66204","DOIUrl":"https://doi.org/10.56179/001c.66204","url":null,"abstract":"<p><p>The Green Tree Python (<i>Morelia viridis</i>) is a snake native to New Guinea, some islands in Indonesia, and the Cape York Peninsula in Australia. We present the whole genome sequence for this species. Illumina sequencing was performed on a genetic sample from a single individual. The reads were assembled using a <i>de novo</i> method followed by a series of references from related species for finishing. The raw and assembled data are publicly available via Genbank: Sequence Read Archive (SRR19167500) and genome (JANHOE000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/21/ff/nihms-1861548.PMC9835526.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341630","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Lythrypnus dalli, the Bluebanded Goby. 蓝带虾虎鱼(Lythrypnus dali)全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01
Kuk-Jeong Chin, Matthew S Grober, Stacy Pirro
{"title":"The Complete Genome Sequence of <i>Lythrypnus dalli,</i> the Bluebanded Goby.","authors":"Kuk-Jeong Chin,&nbsp;Matthew S Grober,&nbsp;Stacy Pirro","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>The Bluebanded goby (<i>Lythrypnus dalli</i>) is a small, highly social marine goby. We present the whole genome sequence of this species. A total of 118,266,160 paired end reads consisting of 17.9G bases were obtained by sequencing tissue from a single individual. The reads were assembled by a <i>de novo</i> method followed by alignment to related species. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR5170315) and Assembly (GCA_011763505).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9681038/pdf/nihms-1847765.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9334350","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequences of 18 Species of Gadiformes (Actinopterygii, Chordata). 18种毛线形目(放线形目，脊索目)的全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 DOI: 10.56179/001c.56079
Adela Roa-Varon, Stacy Pirro
{"title":"The Complete Genome Sequences of 18 Species of Gadiformes (Actinopterygii, Chordata).","authors":"Adela Roa-Varon,&nbsp;Stacy Pirro","doi":"10.56179/001c.56079","DOIUrl":"https://doi.org/10.56179/001c.56079","url":null,"abstract":"<p><p>We present the complete genome sequences of 18 species of Gadiformes from 9 genera. Illumina sequencing was performed on genetic material from single wild-caught individuals. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data is publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9718482/pdf/nihms-1853581.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Complete Genome Sequence of Cyanopsitta spixii, the Spix's Macaw. 斯皮克斯金刚鹦鹉的全基因组序列。
Biodiversity genomes Pub Date : 2022-01-01 Epub Date: 2022-08-20 DOI: 10.56179/001c.37839
Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequence of <i>Cyanopsitta spixii,</i> the Spix's Macaw.","authors":"Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.37839","DOIUrl":"10.56179/001c.37839","url":null,"abstract":"<p><p>The Spix's Macaw (<i>Cyanopsitta spixii</i>) is a critically endangered parrot that was once endemic to Brazil. We present the whole genome sequence of this species. Illumina sequencing was performed on a genetic sample from a single captive individual. The reads were assembled using a de novo method followed by a series of references from related species for finishing. The raw and assembled data is publicly available via Genbank: Sequence Read Archive (SRR15037507) and Assembly (GCA_024336845).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/72/d7/nihms-1847760.PMC9718372.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9341118","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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