Y. Peña-Ramírez, Natalia Y. Labrín-Sotomayor, P. A. Becerra-Lucio, Hugo Ruiz-González, Norka M. Fortuny-Fernández, Fulgencio Alatorre-Cobos, S. Pirro
{"title":"The Complete Genome Sequences of 12 Species of Plants from the Yucatan Peninsula, Mexico.","authors":"Y. Peña-Ramírez, Natalia Y. Labrín-Sotomayor, P. A. Becerra-Lucio, Hugo Ruiz-González, Norka M. Fortuny-Fernández, Fulgencio Alatorre-Cobos, S. Pirro","doi":"10.56179/001c.116283","DOIUrl":"https://doi.org/10.56179/001c.116283","url":null,"abstract":"We present the complete genome sequences of 12 species of plants from Campeche, Mexico and the greater Yucatan Peninsula: Agave americana, Agave angustifolia, Agave fourcroydes, Agave karwinskii, Agave potatorum, Agave tequiliana, Annona squamosa, Cedrela odorata, Pouteria campechiana, Pouteria glomerata, Trichilia hirta and Trichilia minutiflora.","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"226 5","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140730383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Omar Chlyah, Meriem Alaoui Mdarhi, Douae El Ghoubali, Michael Kieras, S. Pirro, Hassan Ghazal
{"title":"The Complete Genome Sequence of Ceratonia siliqua L. (Fabaceae, Fabales), Carob","authors":"Omar Chlyah, Meriem Alaoui Mdarhi, Douae El Ghoubali, Michael Kieras, S. Pirro, Hassan Ghazal","doi":"10.56179/001c.92058","DOIUrl":"https://doi.org/10.56179/001c.92058","url":null,"abstract":"We present the whole genome sequence of Ceratonia siliqua L. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR24502586) and assembled genome (JASKGM000000000).","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"29 3","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139535825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biodiversity genomesPub Date : 2024-01-01Epub Date: 2024-11-10DOI: 10.56179/001c.125785
Carmen D Pedraza Marron, Stacy Pirro, Ricardo Betancur
{"title":"The Complete Genome Sequence of Haemulon aurolineatum (Haemulidae, Lutjaniformes), the Tomtate Grunt.","authors":"Carmen D Pedraza Marron, Stacy Pirro, Ricardo Betancur","doi":"10.56179/001c.125785","DOIUrl":"10.56179/001c.125785","url":null,"abstract":"<p><p>We present the whole genome sequence of Haemulon aurolineatum. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR28478403) and assembled genome (JBCAUF000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11567149/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142649347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biodiversity genomesPub Date : 2024-01-01Epub Date: 2024-05-28DOI: 10.56179/001c.118546
Lina M Raubold, Rebecca N Lopez-Anido, Stacy Pirro, Ángel Valdés, Jessica A Goodheart
{"title":"The Complete Genome Sequences of 7 Species of Nudibranchs (Nudibranchia, Gastropoda).","authors":"Lina M Raubold, Rebecca N Lopez-Anido, Stacy Pirro, Ángel Valdés, Jessica A Goodheart","doi":"10.56179/001c.118546","DOIUrl":"10.56179/001c.118546","url":null,"abstract":"<p><p>We present genome sequences of 7 species of sea slugs from 4 genera. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11279692/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141790173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biodiversity genomesPub Date : 2024-01-01Epub Date: 2024-12-19DOI: 10.56179/001c.127653
Therese Catanach, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett
{"title":"The Complete Genome Sequences of 30 Species of Falcons (Falconiformes, Aves).","authors":"Therese Catanach, Taylor Hains, Stacy Pirro, John Bates, Shannon Hackett","doi":"10.56179/001c.127653","DOIUrl":"10.56179/001c.127653","url":null,"abstract":"<p><p>We present the complete genome sequences of 30 species of falcons. Illumina sequencing was performed on genetic material from wild-caught specimens. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11687367/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142916389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biodiversity genomesPub Date : 2024-01-01Epub Date: 2024-05-06DOI: 10.56179/001c.117365
Harold B White, Stacy Pirro
{"title":"The complete genome sequences of two species of seventeen-year cicadas: <i>Magicicada septendecim</i> and <i>Magicicada septendecula</i>.","authors":"Harold B White, Stacy Pirro","doi":"10.56179/001c.117365","DOIUrl":"10.56179/001c.117365","url":null,"abstract":"<p><p>The genus <i>Magicicada</i> (Hemiptera: Cicadidae) includes the periodical cicadas of Eastern North America. Spending the majority of their long lives underground, the adult cicadas emerge every 13 or 17 years to spend 4-6 weeks as adult to mate. We present the whole genome sequences of two species of 17-year cicadas, <i>Magicicada septendecim</i> and <i>Magicicada septendecula</i>. The reads were assembled by a de novo method followed by alignments to related species. Annotation was performed by GeneMark-ES. The raw and assembled data is available via NCBI Short Read Archive and Assembly databases.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11105696/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141072428","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biodiversity genomesPub Date : 2024-01-01Epub Date: 2024-01-17DOI: 10.56179/001c.92315
Jessica A Goodheart, Maryna P Lesoway, Stacy Pirro
{"title":"The Complete Genome Sequences of seven species of sea slugs (Nudibranchia, Gastropoda, Mollusca).","authors":"Jessica A Goodheart, Maryna P Lesoway, Stacy Pirro","doi":"10.56179/001c.92315","DOIUrl":"10.56179/001c.92315","url":null,"abstract":"<p><p>We present the complete genome sequences of seven species of sea slugs. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10811759/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139572309","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Biodiversity genomesPub Date : 2024-01-01Epub Date: 2024-05-28DOI: 10.56179/001c.118307
Eric Edsinger, Michael Kieras, Stacy Pirro
{"title":"The Genome Sequences of 118 Taxonomically Diverse Eukaryotes of the Salish Sea.","authors":"Eric Edsinger, Michael Kieras, Stacy Pirro","doi":"10.56179/001c.118307","DOIUrl":"10.56179/001c.118307","url":null,"abstract":"<p><p>We present the complete genome sequences of 118 taxonomically diverse eukaryotes from the Salish Sea. Illumina sequencing was performed on genetic material from wild-collected individuals. The reads were assembled using a <i>de novo</i> method followed by a finishing step. The raw and assembled data are publicly available via Genbank.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11156190/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141285522","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Andrew Sweet, Robert Wilson, Jack Reakoff, Sarah Sonsthagen, Colleen Hurst, Stacy Pirro
{"title":"The Complete Genome Sequence of Splendidofilaria pectoralis (Onchocercidae, Rhabditida, Chromadorea, Nematoda).","authors":"Andrew Sweet, Robert Wilson, Jack Reakoff, Sarah Sonsthagen, Colleen Hurst, Stacy Pirro","doi":"10.56179/001c.126786","DOIUrl":"10.56179/001c.126786","url":null,"abstract":"<p><p>We present the complete genome sequence of Splendidofilaria pectoralis, a nematode parasite of grouse (Aves: Galliformes: Tetraonini). Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR28509439) and assembled genome (JBFSWT000000000).</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11633820/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142815219","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}