{"title":"Complexation of water-soluble phosphorylated calixarenes with uracils. Stability constants and DFT study of the supramolecular complexes","authors":"O.I. Kalchenko, A.B. Rozhenko, S.O. Cherenok, A.I. Selikhova, S.Yu. Suikov, A.A. Kyrylchuk, V.I. Kalchenko","doi":"10.1007/s10847-023-01198-x","DOIUrl":"10.1007/s10847-023-01198-x","url":null,"abstract":"<div><p>Modification of the upper rim of the lipophilic cone-shaped tetrapropoxycalix [4]arene with hydrophilic phosphine oxide groups or phosphinic acid groups yielded nano-sized water-soluble calixarenes that form supramolecular complexes with uracils, including active pharmaceutical ingredients of 5-Fluorouracil and 5-Methyluracil drugs. Stability constants of the formed complexes in an aqueous-organic medium were determined by the HPLC method. The most favored structures of the calixarenes and their uracil complexes were optimized at the DFT level of approximation. In the most favored structures of all adducts, the uracil molecules coordinate via hydrogen bonding with the phosphorus-containing groups on the upper rim of the calixarene ligands.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 9-10","pages":"369 - 383"},"PeriodicalIF":2.3,"publicationDate":"2023-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47902966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Complex of antamanide with the nitrate anion","authors":"Petr Vaňura, David Sýkora, Tereza Uhlíková","doi":"10.1007/s10847-023-01199-w","DOIUrl":"10.1007/s10847-023-01199-w","url":null,"abstract":"<div><p>Anionic complex of antamanide with the nitrate anion has been proven by electrospray ionization mass spectrometry (ESI-MS) method. Further, applying quantum chemical DFT calculations, the most probable structure of this complex was derived. The nitrate anion is embedded in the molecule of antamanide and its oxygens atoms are bonded by seven bonds to the hydrogen atoms of the ligand. Finally, the interaction energy, <i>E</i>(int), of the antamanide-NO<sub>3</sub><sup>−</sup> complex was calculated as <i>E</i>(int) = -175.9 kJ/mol.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 9-10","pages":"385 - 391"},"PeriodicalIF":2.3,"publicationDate":"2023-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10847-023-01199-w.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45641596","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Structural investigations, DFT, anti-oxidant and α-amylase inhibitory activity of metal complexes of benzothiazole based hydrazone","authors":"Kiran Singh, Indu Bala","doi":"10.1007/s10847-023-01196-z","DOIUrl":"10.1007/s10847-023-01196-z","url":null,"abstract":"<div><p>The present manuscript describes the synthesis, spectral characterisation, DFT studies and biological activity of a series of 3<i>d</i> transition metal complexes of (<i>E</i>)-2-((2-(benzo[<i>d</i>]thiazole-2-yl)hydrazono)methyl)-5-(diethylamino)phenol (<b>L1</b>) in (1:1) and (1:2) ratio. Various spectral analysis revealed the presence of ONN binding domain in <b>L1</b>. The elemental composition was confirmed using mass spectrometry technique. The stability of the geometry was also confirmed with DFT based method using B3LYP/LanL2Dz level of theory. Absence of any imaginary frequency revealed the presence of geometry on global minima of potential energy surface. Job’s plot confirm the stoichiometric ratio of metal complexes. Electrochemical behaviour (cyclic voltammetry), magnetic moment and Conductance measurements were also investigated for the metal-complexes. Kinetic parameters for different stages of thermal decomposition of metal complexes were calculated by using Coats–Redfern and Broido method. Positive free-energy of decomposition describes the non-spontaneous nature of thermal decomposition. The negative ΔS value observed for metal complexes under consideration reveals the ordered arrangement of metal complexes than their reactants. The octahedral environment of Co<sup>2+</sup>, Ni<sup>2+</sup>, Cu<sup>2+</sup> and Cd<sup>2+</sup> complexes was elucidated with the help of spectroscopic data. The ligand (<b>L1</b>) and its metal complexes (<b>M1–M8</b>) exhibited excellent α-amylase and moderate anti-oxidant activities. Maximum α-amylase inhibition was exhibited by <b>M7</b> with a percentage inhibition of 96.65% (<i>IC</i><sub>50</sub> = 0.070 µM) and the lowest by <b>M1</b> (87.00%, <i>IC</i><sub>50</sub> = 0.086 µM).</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 7-8","pages":"301 - 316"},"PeriodicalIF":2.3,"publicationDate":"2023-07-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5042755","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jonathan Campos Marcelino, Carolina Lúcia Cardoso Ribeiro, Gleicy Teixeira, Erick Ferreira Lacerda, Cleber Paulo Andrada Anconi
{"title":"Inclusion of paraoxon, parathion, and methyl parathion into α-cyclodextrin: a GFN2-xTB multi-equilibrium quantum study","authors":"Jonathan Campos Marcelino, Carolina Lúcia Cardoso Ribeiro, Gleicy Teixeira, Erick Ferreira Lacerda, Cleber Paulo Andrada Anconi","doi":"10.1007/s10847-023-01192-3","DOIUrl":"10.1007/s10847-023-01192-3","url":null,"abstract":"<div><p>A new theoretical approach was recently addressed to predict cyclodextrin host–guest binding constants with the GFN2-xTB semiempirical quantum method. Within such a strategy, a set of starting supramolecular arrangements is automatically obtained through the UD-APARM software, and many optimized host–guest systems are used to obtain each binding constant. In the present work, within the scope of the multi-equilibrium treatment, we carried out a theoretical study concerning the host–guest systems formed with paraoxon (PRX), methyl-parathion (MPTN), and parathion (PTN) into α-cyclodextrin (α-CD), for which experimental data were addressed. Those guests correspond to pesticides in use, and their inclusion plays a role in remediation technology. The procedure for estimating binding constants for the host–guest system is discussed in terms of the ranges for the supramolecular parameters employed in exploring the GFN2-xTB Potential Energy Surface (PES). As a result, by investigating an unprecedented number of starting systems (3,076), we identified that proper exploration of the GFN2-xTB PES gives a reliable prediction of the binding constant in solution. Furthermore, with the study of different starting associations, for PTN/α-CD, we found an excellent linear correlation (R<sup>2</sup> = 0.987) between GFN2-xTB data and experimental information, which, as in our previous study, supports the discussed methodology for application in predicting binding constants for CD-based host–guest systems.</p><h3>Graphical abstract</h3>\u0000 <figure><div><div><div><picture><source><img></source></picture></div></div></div></figure>\u0000 </div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 7-8","pages":"263 - 276"},"PeriodicalIF":2.3,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4031679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ali Zamani, Yaghoub Sarrafi, Mina Roustaei Rouzbahani, Mahmood Tajbakhsh
{"title":"A new pyridine-dicarbohydrazide-based turn-off fluorescent and colorimetric chemosensor for selective recognition of Cu2+","authors":"Ali Zamani, Yaghoub Sarrafi, Mina Roustaei Rouzbahani, Mahmood Tajbakhsh","doi":"10.1007/s10847-023-01193-2","DOIUrl":"10.1007/s10847-023-01193-2","url":null,"abstract":"<div><p>A new indole-containing 2,6-pyridinedicarbohydrazide P3 was synthesized and well characterized employing NMR, ESI<sup>+</sup>-MS, FT-IR, and elemental analyses. The synthesized compound was examined as an efficient fluorescent turn-off and colorimetric cation receptor. The P3 receptor exhibited a remarkable rapid color change from colorless to brown in the presence of Cu<sup>2+</sup> cations. P3 displayed selective fluorescence quenching and a UV-vis redshift only in the presence of Cu<sup>2+</sup> ions. Job’s plot, NMR titration, and ESI<sup>+</sup>-MS data were used to determine the complex’s 1:2 stoichiometry between P3 and Cu<sup>2+</sup>. Fluorescence titration was used to calculate the association constant (K<sub>a</sub>) as 2.9–3.5 × 10<sup>11</sup> M<sup>− 2</sup> and the limit of detection (LOD) as 4.2 × 10<sup>− 9</sup> M. P3-based test strips were developed, which might be used as a simple and effective Cu<sup>2+</sup> test kit. DFT calculations were also performed to optimize the structures of the P3 and P3 + Cu<sup>2+</sup> complex. This design will likely provide another avenue to develop chemosensors incorporating a functional group on the upper rim of the 2,6-pyridinedicarbohydrazide platform.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 7-8","pages":"277 - 288"},"PeriodicalIF":2.3,"publicationDate":"2023-06-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10847-023-01193-2.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5010226","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Synthesis of tris- and pentakis(tetra-armed cyclen) and their complexing properties towards silver(I) ions","authors":"Hiroki Horita, Fumika Nemoto, Izumi Sato, Mari Ikeda, Shunsuke Kuwahara, Yoichi Habata","doi":"10.1007/s10847-023-01189-y","DOIUrl":"10.1007/s10847-023-01189-y","url":null,"abstract":"<div><p>Tris(tetra-armed cyclen) with three cyclens linearly linked (<b>1a</b>) and pentakis(tetra-armed cyclen) with four cyclens linked to the central cyclen (<b>1b</b>) have been prepared. These structures of the ligands were confirmed by <sup>1</sup>H and <sup>13</sup>C{<sup>1</sup>H} NMR, CSI-MS, and elemental analysis. Upon addition of Ag<sup>+</sup> to these novel ligands, we observed the formation of 1:1 to 1:3 (= <b>1a</b>:Ag<sup>+</sup>) complexes and 1:1 to 1:5 (= <b>1b</b>:Ag<sup>+</sup>) complexes, respectively, according to stoichiometry. The association constants for <b>1a</b> and <b>1b</b> with Ag<sup>+</sup> using titration experiments with UV–vis spectroscopy were also estimated. Log<i>β</i><sub>1</sub>, log<i>β</i><sub>2</sub>, and log<i>β</i><sub>3</sub> of <b>1a</b> were 6.4, 14, and 21, respectively, while log<i>β</i><sub>1</sub>, log<i>β</i><sub>2</sub>, log<i>β</i><sub>3</sub>, log<i>β</i><sub>4</sub>, and log<i>β</i><sub>5</sub> of <b>1b</b> were 6.8, 13, 19, 24, and 29, respectively. The association constants obtained from experiments revealed that all cyclen units within the molecules formed complexes with Ag<sup>+</sup> that exhibited nearly identical association constants. The result suggests that the ligands have a uniform binding affinity for Ag<sup>+</sup> throughout their structures.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 5-6","pages":"223 - 233"},"PeriodicalIF":2.3,"publicationDate":"2023-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4215699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Play of molecular host: guest assembly on a G-quadruplex binder","authors":"Aleyamma Alexander, Archana Sumohan Pillai, Sudhaker Raboni Grace, Nallamuthu Ananthi, Haridas Pal, Israel Vijayaraj Muthu Vijayan Enoch, Mhejabeen Sayed","doi":"10.1007/s10847-023-01185-2","DOIUrl":"10.1007/s10847-023-01185-2","url":null,"abstract":"<div><p>Benzimidazoles are known G-quadruplex binding molecules. G-quadruplex-selective binding is relevant in the target-based design of the molecules for treating certain diseases, including cancer. Herein, we present the synthesis of a new benzimidazolyl guanidine and its binding association with various nucleic acids viz., calf thymus DNA (duplex), kit22, myc22, and telo (G-quadruplexes). The synthesized compound is characterized by IR, NMR, and mass spectrometric techniques. The binding titration is carried out utilizing UV–vis and fluorescence spectroscopy. The conformational changes of DNAs on the ligand binding are monitored using circular dichroism. Further, the compound inclusion complex with a porphyrin-β-cyclodextrin host molecule. The binding strengths of the guanidine and its Ppy-CD inclusion complex are compared. The inclusion complexes bind stronger to G-quadruplexes than CT-DNA. The binding constants value is the largest for the interaction of the guanidine: porphyrin-β-cyclodextrin inclusion complex with the G-quadruplex kit22, which possesses a parallel conformation. The difference in the binding strengths is articulated and compared between duplex and G-quadruplex bindings.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 3-4","pages":"147 - 159"},"PeriodicalIF":2.3,"publicationDate":"2023-04-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10847-023-01185-2.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4443938","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kevin Droguett, Guillermo E. Quintero, José G. Santos, Margarita E. Aliaga
{"title":"Advancement in supramolecular control of organic reactivity induced by cucurbit[n]urils","authors":"Kevin Droguett, Guillermo E. Quintero, José G. Santos, Margarita E. Aliaga","doi":"10.1007/s10847-022-01172-z","DOIUrl":"10.1007/s10847-022-01172-z","url":null,"abstract":"<div><p>This Review Article covers advances over the past two decades in the field of the organic modulation reactivity by supramolecular hosts. Specifically, the scope of this review is focused on some members of the cucurbit[<i>n</i>]urils (CB[<i>n</i>]) family. As we will show with different examples, the use of CB [6], CB [7] and CB [8] enables modification of the reactivity on a wide variety of reactions by their exceptional recognition properties in aqueous medium, adequate size, hydrophobic cavity and polarity portals. The first part of this review gives a brief discussion of the chemical properties of CB[<i>n</i>] relevant to understanding their effect on the reactivity of organic guests. Then, this article highlights two opposite effects: catalysis and inhibition processes based on the ability of CB[<i>n</i>] to modulate the chemical reactivity of representatives guests. Some examples of organic reactions, such as solvolysis, oxidation, isomerization, cicloaddition, among others, are discussed from a kinetic and thermodynamic point of view.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"103 1-2","pages":"1 - 20"},"PeriodicalIF":2.3,"publicationDate":"2022-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5577223","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Irina S. Terekhova, Andrey Yu. Manakov, Galina V. Villevald, Tamara D. Karpova
{"title":"Structural and physico-chemical properties of clathrate hydrates of tetraisoamylammonium polyacrylates","authors":"Irina S. Terekhova, Andrey Yu. Manakov, Galina V. Villevald, Tamara D. Karpova","doi":"10.1007/s10847-022-01171-0","DOIUrl":"10.1007/s10847-022-01171-0","url":null,"abstract":"<div><p>Physico-chemical and structural characteristics have been studied of ionic clathrate hydrates of cross-linked (<i>n</i> = 1%) tetraisoamylammonium (TiAA) polyacrylates with different extent of substitution of proton-ions of the carboxylic groups for TiAA cations (<i>x</i> = 77%, 60%, 40%) in the polyacrylate. Powder X-ray diffraction studies have been carried out. All hydrates are isostructural to the earlier studied clathrate hydrate of cross-linked TiAA polyacrylate with <i>x</i> = 100%. The hexagonal structure with the space group <i>P</i>6<i>/mmm</i> and slightly different unit cell parameters (<i>a</i> ~ 12.24 Å, <i>c</i> ~ 12.70 Å) is related to the idealized Hexagonal Structure I of clathrate hydrates. Compositions, phase transition temperatures and decomposition enthalpies of the hydrates have been determined using differential thermal analysis and differential scanning calorimetry. The stability of the hydrates structure decreases with lessening of the content of TiAA cations in the polymeric molecule. The hydrates decomposition temperatures go down from + 14.6 to + 9.8 °C (for <i>x</i> = 100–40%) and the decomposition enthalpies—from 189.1 kJ/mol of hydrate to 84.0 kJ/mol of hydrate (for the same interval of <i>x</i>). The comparison has been made of physico-chemical characteristics of the ionic clathrate hydrates of cross-linked TiAA polyacrylates with those of the hydrates of tetrabutylammonium (TBA) polyacrylates and also of the ionic clathrate hydrates of TBA salts with monomeric anions.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"102 11-12","pages":"905 - 915"},"PeriodicalIF":2.3,"publicationDate":"2022-11-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1007/s10847-022-01171-0.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4100222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Construction of unique pseudo[1]rotaxanes and [1]rotaxanes based on mono-functionalized pillar[5]arene Schiff bases","authors":"Dan Li, Ying Han, Jing Sun, Chao-Guo Yan","doi":"10.1007/s10847-022-01165-y","DOIUrl":"10.1007/s10847-022-01165-y","url":null,"abstract":"<div><p>A series of mono-functionalized pillar[5]arene Schiff bases were successfully synthesized by amidation reaction of pillar[5]arene mono-<i>O</i>-butyrate with various diaminoalkanes and sequential condensation reaction of monoaminoalkyl-functionalized pillar[5]arenes with substituted salicylaldehydes. <sup>1</sup>H NMR and 2D NOESY spectra clearly showed that all monoaminoalkyl-functionalized pillar[5]arenes could form pseudo[1]rotaxanes by self-sorting of aminoalkyl chain into the cavity of pillar[5]arene, while pillars[5]arene Schiff bases with longer than butylene chain (n ≥ 4) could form stable [1]rotaxane. The fluorescence spectrophotometry indicated that pillar[5]arene Schiff bases coordinated with Zn<sup>2+</sup> ion to form interesting complexes with 2:1 coordination ratio and with significant enhance of the fluorescence intensity.</p></div>","PeriodicalId":638,"journal":{"name":"Journal of Inclusion Phenomena and Macrocyclic Chemistry","volume":"102 9-10","pages":"819 - 829"},"PeriodicalIF":2.3,"publicationDate":"2022-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"4954493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}