Biopreservation and Biobanking最新文献

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The Canadian Tissue Repository Network Biobank Certification and the College of American Pathologists Biorepository Accreditation Programs: Two Strategies for Knowledge Dissemination in Biobanking. 加拿大组织库网络生物库认证和美国病理学家学院生物库认证计划:生物库知识传播的两种策略。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2017-02-01 Epub Date: 2016-10-14 DOI: 10.1089/bio.2016.0021
Rebecca O Barnes, Katheryn E Shea, Peter H Watson
{"title":"The Canadian Tissue Repository Network Biobank Certification and the College of American Pathologists Biorepository Accreditation Programs: Two Strategies for Knowledge Dissemination in Biobanking.","authors":"Rebecca O Barnes, Katheryn E Shea, Peter H Watson","doi":"10.1089/bio.2016.0021","DOIUrl":"https://doi.org/10.1089/bio.2016.0021","url":null,"abstract":"As health research increasingly relies on biospecimens and associated data, new demands have emerged for biorepositories to provide assurances of the quality of their overall operations, not just assurances of the quality of the biospecimens and data that they hold. The biobanking community has responded in various ways, including the creation of two different programs to disseminate biobanking best practices. This article describes in detail the Canadian Tissue Repository Network (CTRNet) Biobank Certification Program and the College of American Pathologists (CAP) Biorepository Accreditation Program. Despite differences in their approaches, these programs share one key element-assessment of biobanking practices by an external organization. In the absence of a single internationally endorsed biobanking best practices dissemination program, the CTRNet and CAP programs provide two different solutions, each contributing to the pursuit of enhanced quality in biobanking.","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"15 1","pages":"9-16"},"PeriodicalIF":1.6,"publicationDate":"2017-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2016.0021","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39975557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 11
The establishment of an ISO compliant cancer biobank for Jordan and its neighboring countries through knowledge transfer and training. 通过知识转移和培训,为约旦及其邻国建立符合ISO标准的癌症生物库。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 DOI: 10.1089/bio.2013.0072
Martin Barr, Lina Souan, Peadar MacGabhann, Jeanette Müller, Maxim Al Ashhab, Mohammed Jasser, Khetam Hamza, Sallam Al Hassoon, Uwe Kuhn, Daniela Infante, Denise Lawlor, Kathy Gately, Eyad Amireh, Kenneth O'Byrne, Maher A Sughayer
{"title":"The establishment of an ISO compliant cancer biobank for Jordan and its neighboring countries through knowledge transfer and training.","authors":"Martin Barr,&nbsp;Lina Souan,&nbsp;Peadar MacGabhann,&nbsp;Jeanette Müller,&nbsp;Maxim Al Ashhab,&nbsp;Mohammed Jasser,&nbsp;Khetam Hamza,&nbsp;Sallam Al Hassoon,&nbsp;Uwe Kuhn,&nbsp;Daniela Infante,&nbsp;Denise Lawlor,&nbsp;Kathy Gately,&nbsp;Eyad Amireh,&nbsp;Kenneth O'Byrne,&nbsp;Maher A Sughayer","doi":"10.1089/bio.2013.0072","DOIUrl":"https://doi.org/10.1089/bio.2013.0072","url":null,"abstract":"<p><p>Research studies aimed at advancing cancer prevention, diagnosis, and treatment depend on a number of key resources, including a ready supply of high-quality annotated biospecimens from diverse ethnic populations that can be used to test new drugs, assess the validity of prognostic biomarkers, and develop tailor-made therapies. In November 2011, KHCCBIO was established at the King Hussein Cancer Center (KHCC) with the support of Seventh Framework Programme (FP7) funding from the European Union (khccbio.khcc.jo). KHCCBIO was developed for the purpose of achieving an ISO accredited cancer biobank through the collection, processing, and preservation of high-quality, clinically annotated biospecimens from consenting cancer patients, making it the first cancer biobank of its kind in Jordan. The establishment of a state-of-the-art, standardized biospecimen repository of matched normal and lung tumor tissue, in addition to blood components such as serum, plasma, and white blood cells, was achieved through the support and experience of its European partners, Trinity College Dublin, Biostór Ireland, and accelopment AG. To date, KHCCBIO along with its partners, have worked closely in establishing an ISO Quality Management System (QMS) under which the biobank will operate. A Quality Policy Manual, Validation, and Training plan have been developed in addition to the development of standard operating procedures (SOPs) for consenting policies on ethical issues, data privacy, confidentiality, and biobanking bylaws. SOPs have also been drafted according to best international practices and implemented for the donation, procurement, processing, testing, preservation, storage, and distribution of tissues and blood samples from lung cancer patients, which will form the basis for the procurement of other cancer types. KHCCBIO will be the first ISO accredited cancer biobank from a diverse ethnic Middle Eastern and North African population. It will provide a unique and valuable resource of high-quality human biospecimens and anonymized clinicopathological data to the cancer research communities world-wide.</p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"3-12"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2013.0072","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40302959","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
Validation of vacuum-based refrigerated system for biobanking tissue preservation: analysis of cellular morphology, protein stability, and RNA quality. 用于生物库组织保存的真空冷冻系统的验证:细胞形态、蛋白质稳定性和RNA质量分析。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 Epub Date: 2014-01-15 DOI: 10.1089/bio.2013.0065
Valentina Condelli, Giacomo Lettini, Giuseppe Patitucci, Fiorella D'Auria, Michele D'Amico, Giulia Vita, Pellegrino Musto, Carmela Cuomo, Matteo Landriscina
{"title":"Validation of vacuum-based refrigerated system for biobanking tissue preservation: analysis of cellular morphology, protein stability, and RNA quality.","authors":"Valentina Condelli,&nbsp;Giacomo Lettini,&nbsp;Giuseppe Patitucci,&nbsp;Fiorella D'Auria,&nbsp;Michele D'Amico,&nbsp;Giulia Vita,&nbsp;Pellegrino Musto,&nbsp;Carmela Cuomo,&nbsp;Matteo Landriscina","doi":"10.1089/bio.2013.0065","DOIUrl":"https://doi.org/10.1089/bio.2013.0065","url":null,"abstract":"<p><p>Biobanks of fresh, unfixed human normal and malignant tissues represent a valuable source for gene expression analysis in translational cancer research and molecular pathology. However, the success of molecular and cellular analysis in both clinical and translational research is strongly dependent on the collection, handling, storage, and quality control of fresh human tissue samples. The aim of this study was to evaluate an innovative vacuum-based refrigerated system, as a logistically feasible technology to increase the collection of tissue specimens, preserving the integrity of cellular and molecular components. We tested randomly-selected tissues stored under vacuum at 4°C by using endpoints important for research and diagnosis, including tissue morphology, epitope stability, and RNA integrity. Gene expression was evaluated by qualitative and quantitative RT analysis of selected housekeeping and tissue-specific genes. Tissue morphology and overall protein stability were generally well preserved, being compromised only in gallbladder tissue. By contrast, phosphoprotein and RNA analysis demonstrated a time-dependent degree of degradation, with progressive loss of stability from 24 to 72 hours. However, this reduction in RNA quality did not represent a limitation for successful expression analysis of selected genes. Indeed, a comparative qualitative and quantitative RT-PCR analysis showed that RNA extracted from tissues stored under vacuum is suitable for gene expression profiling, but requires highly sensitive technologies, such as quantitative RT-PCR. These data suggest that the refrigerated vacuum-based system represents a suitable and feasible technology for routine transport of fresh specimens from surgery to biobanks, thus increasing the opportunity to collect biospecimens. </p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"35-45"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2013.0065","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40302963","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
Biobanking practice: RNA storage at low concentration affects integrity. 生物库实践:低浓度RNA存储影响完整性。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 DOI: 10.1089/bio.2013.0056
Eloisa Helena Ribeiro Olivieri, Luana de Andrade Franco, Rafael Gomes Pereira, Louise Danielle Carvalho Mota, Antônio Hugo J F M Campos, Dirce Maria Carraro
{"title":"Biobanking practice: RNA storage at low concentration affects integrity.","authors":"Eloisa Helena Ribeiro Olivieri,&nbsp;Luana de Andrade Franco,&nbsp;Rafael Gomes Pereira,&nbsp;Louise Danielle Carvalho Mota,&nbsp;Antônio Hugo J F M Campos,&nbsp;Dirce Maria Carraro","doi":"10.1089/bio.2013.0056","DOIUrl":"https://doi.org/10.1089/bio.2013.0056","url":null,"abstract":"<p><p>A critical issue in defining protocols for biobanking practices is the preservation of total RNA for assessing the whole transcriptome and ensuring that it can be utilized in clinically oriented studies. Storage conditions, such as temperature and the length of time that tissues and purified RNA stay frozen, may directly impact RNA preservation. In this study, we evaluated a) the quality of RNA (as measured by RNA Integrity Number) purified from head and neck tumor tissues stored at -140°C for distinct time intervals of up to 7 years, and b) the quality of their respective RNAs stored for 4 years at -80°C when diluted at either 250 ng/μL or 25 ng/μL, with repeated freezing and thawing. Additionally, we generated a profile of the RNA collection of human tumors from different body sites stored at the AC Camargo Biobank. Our results showed no significant change in RIN values according to length of storage at -140°C. With respect to RNA aliquots stored at -80°C, RNA integrity at 250 ng/μL was preserved, while statistically significant degradation was observed at 25 ng/μL after only 8 months of storage. The RNA collection from most of the human tumors stored at the AC Camargo Biobank exhibited high quality, with average RIN around seven. However, ovary and stomach samples had the greatest RNA degradation. Taken together, the results show that both the temperature of preservation and the concentration of RNA should be strictly controlled by the biobank staff involved in macromolecule purification. Moreover, the RNAs from our biobank can be useful for the most demanding methods of gene expression analysis by virtue of adherence to optimal standard operating procedures for both tissue and macromolecule laboratories. </p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"46-52"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2013.0056","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40300292","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 44
Processing of diagnostic blood specimens: is it really necessary to mix primary blood tubes after collection with evacuated tube system? 诊断性血液标本的处理:采集后的原血管真的需要与真空管系统混合吗?
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 DOI: 10.1089/bio.2013.0043
Gabriel Lima-Oliveira, Giuseppe Lippi, Gian Luca Salvagno, Giorgio Brocco, Stefania Gaino, Francesco Dima, Waldemar Volaski, Fabiane Gomes Rego, Geraldo Picheth, Gian Cesare Guidi
{"title":"Processing of diagnostic blood specimens: is it really necessary to mix primary blood tubes after collection with evacuated tube system?","authors":"Gabriel Lima-Oliveira,&nbsp;Giuseppe Lippi,&nbsp;Gian Luca Salvagno,&nbsp;Giorgio Brocco,&nbsp;Stefania Gaino,&nbsp;Francesco Dima,&nbsp;Waldemar Volaski,&nbsp;Fabiane Gomes Rego,&nbsp;Geraldo Picheth,&nbsp;Gian Cesare Guidi","doi":"10.1089/bio.2013.0043","DOIUrl":"https://doi.org/10.1089/bio.2013.0043","url":null,"abstract":"<p><strong>Background: </strong>The preanalytical phase is considered the most vulnerable phase in biopreservation, biobanking, and laboratory diagnostics. Accurate mixing after blood collection is claimed to be important and recommended by the manufacturers.</p><p><strong>Objective: </strong>To evaluate whether it is really necessary to mix the primary blood tubes immediately after blood collection by means of evacuated tube systems.</p><p><strong>Material and methods: </strong>Blood from 300 outpatients was equally and randomly divided into three groups: G1, sodium citrate vacuum tubes; G2, lithium heparin vacuum tubes; and G3, K2EDTA vacuum tubes. All vacuum tubes were processed using three different procedures. Procedure 1: Gold Standard (P1): All specimens mixed gently and carefully by inverting five times as recommended; Procedure 2: Rest time (P2): All specimens remained 5 min in the upright position, followed by gentle careful mixing by inverting five times; Procedure 3: No mix (P3): All specimens were left in upright position without mixing afterwards. The influence of the primary mixing tube procedure was evaluated for clinical chemistry, hematology, and coagulation parameters by paired t-test. The bias from the mixing procedure was also compared with quality specifications derived from biological variation.</p><p><strong>Results: </strong>Significant differences (p<0.017) were found for: i) red blood cell count and hematocrit when P1 was compared with P2; ii) alanine aminotransferase and erythrocyte sedimentation rate when P1 was compared with P3; iii) red blood cell count, hematocrit, and hemolysis index when P2 was compared with P3. Surprisingly, clinically significant differences were found only for sodium when P1 was compared with P2, and P1 was compared with P3. No fibrin filaments or microclots were observed in any samples.</p><p><strong>Conclusion: </strong>Primary blood tubes mixing after collection with evacuated tube system appears to be unnecessary.</p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"53-9"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2013.0043","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40300293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
A complex intervention for workflow enhancement at the Swedish cervical cytology biobank. 在瑞典宫颈细胞学生物库的一个复杂的干预工作流程的增强。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 Epub Date: 2014-02-12 DOI: 10.1089/bio.2013.0068
Nasrin Perskvist, Christian Björklund, Joakim Dillner
{"title":"A complex intervention for workflow enhancement at the Swedish cervical cytology biobank.","authors":"Nasrin Perskvist,&nbsp;Christian Björklund,&nbsp;Joakim Dillner","doi":"10.1089/bio.2013.0068","DOIUrl":"https://doi.org/10.1089/bio.2013.0068","url":null,"abstract":"<p><p>The primary responsibility of biobanks is to collect biospecimens that are true reflections of the local population, thereby promoting translational research that is applicable to the community. The Swedish Cervical Cytology Biobank (SCCB) was designed as a hospital-integrated biobank in 2011. The SCCB has now been implemented in 10 county councils scattered across the country. It is headquartered at Karolinska University Hospital in Stockholm. The SCCB now processes more than 60% of the liquid-based gynecological cell samples obtained throughout Sweden. To improve the productivity of health care and research that rely on SCCB samples, a high level validation of the biobank system according to the principles of Good Laboratory Practices (GLP) is required. The performance of an entire high-throughput system validated by measuring the cell yield proved unsatisfactory after 1 year of sample collection and aliquoting. However, the results led to a number of high quality technical interventions for workflow enhancement. Subsequently, the improved process was applied to the system and led to a significant increase in cell yield. After the integration of the improved high quality methodology into the SCCB, the biobank services progressed more rapidly to serve the needs of personalized medicine and clinical studies. This enhancement was mainly due to the increased ability of the biobank to provide samples to research groups without any risk of leaving insufficient sample volumes for the care of the donor. </p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"69-73"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2013.0068","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40300295","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Biobanking on multiple continents: will international coordination follow? 多大洲的生物银行:国际协调会随之而来吗?
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 Epub Date: 2014-02-12 DOI: 10.1089/bio.2014.1211
Jim Vaught, Marianna Bledsoe, Peter Watson
{"title":"Biobanking on multiple continents: will international coordination follow?","authors":"Jim Vaught,&nbsp;Marianna Bledsoe,&nbsp;Peter Watson","doi":"10.1089/bio.2014.1211","DOIUrl":"https://doi.org/10.1089/bio.2014.1211","url":null,"abstract":"Two recent articles 1,2 by Scott et al. and Basik et al. provided excellent overviews of the current state of biobanking and future directions. As noted by Scott et al. referencing an Indiana University article, ‘‘biobanks exist on every continent, even Antarctica.’’ A map in this article shows that many current biobanks are centered in institutions in North America and Europe. However this landscape is quickly changing. Several meetings in the fall of 2013 highlighted the expanding global nature of biobanking, including the Annual Biobank China conference (http://www.scrcnet.org/ biobank2013/eindex.asp) and ESBB meeting in Verona Italy (http://www.esbb.org/verona/), as well as the French BIOBANQUES annual network meeting in Paris. During the ESBB meeting, planning for new biobanking networks in Israel and Africa were presented. H3Africa (http://h3africa.org/), as noted in our Biobanking in Emerging Countries Section in the December 2013 issue will have major infrastructure and ethical-regulatory challenges to overcome as it develops in the coming year. In Europe BBMRI-ERIC (Biobanking and Biomolecular Resources Research Infrastructure European Research Infrastructure Consortium, http://bbmri-eric.eu/) held its inaugural conference in Austria in September 2013. As noted on its web site BBMRI-ERIC ‘‘will increase efficacy and excellence of European biomedical research by: facilitating access to quality-defined human health/disease-relevant biological resources; including associated data in an efficient and ethically and legally compliant manner; reducing the fragmentation of the biomedical research landscape through harmonization of procedures, implementation of common standards and fostering high-level collaboration; capacity building in countries with less developed biobanking communities, thereby contributing to Europe’s cohesion policy.’’ As noted in multiple presentations at Annual Biobank China and ESBB, there are a number of recurring themes among existing and emerging biobanks and biobanking networks. In China, there are multiple efforts underway to develop new biobanks and networks. The international nature of the participants at the September meeting in Shanghai reflected the ever-expanding global nature of biobanking, as plans develop to realize the tremendous opportunities available for the growth of biospecimen resources in China. In the presentations at ESBB by Akin Abayomi concerning H3Africa, and Yehudit Cohen concerning the new national biobanking network in Israel, securing initial funding and planning for sustainability of these programs were noted as major focuses and challenges. And as always, any new biobanking effort requires close attention to infrastructure (e.g. IT systems, security, equipment validation and maintenance, quality management) and the ethical-regulatory frameworks. In their article ‘‘Biopsies: Next-Generation Biospecimens for Tailoring Therapy,’’ Basik et al. provide an excellent overview of the current stat","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"1-2"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2014.1211","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40302958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
The neuroinflammation biobank in the Department of Neurology, University Hospital Muenster, Germany. 德国明斯特大学医院神经内科的神经炎症生物库。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 Epub Date: 2014-02-12 DOI: 10.1089/bio.2014.1212
Anita Posevitz-Fejfár, Heinz Wiendl
{"title":"The neuroinflammation biobank in the Department of Neurology, University Hospital Muenster, Germany.","authors":"Anita Posevitz-Fejfár,&nbsp;Heinz Wiendl","doi":"10.1089/bio.2014.1212","DOIUrl":"https://doi.org/10.1089/bio.2014.1212","url":null,"abstract":"The Neuroinflammation Biobank has been established with the aim of supporting translational research in the field of neuroinflammatory diseases, with special focus on Multiple Sclerosis. By establishing this liquid biobank we aimed at addressing the increasing need for high quality biomaterial and especially for living human peripheral blood mononuclear cells (PBMCs) for cell-based immunological research.","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"74-5"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2014.1212","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40300296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Collecting and preserving biological samples from challenging environments for DNA analysis. 从具有挑战性的环境中收集和保存生物样本进行DNA分析。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 DOI: 10.1089/bio.2013.0060
Magdalena M Buś, Marie Allen
{"title":"Collecting and preserving biological samples from challenging environments for DNA analysis.","authors":"Magdalena M Buś,&nbsp;Marie Allen","doi":"10.1089/bio.2013.0060","DOIUrl":"https://doi.org/10.1089/bio.2013.0060","url":null,"abstract":"<p><p>Biological materials collected in harsh environments such as archaeological excavations, at crime scenes, after mass disasters, in museums, or non-invasively in the field constitute a highly valuable source of genetic information. However, poor quality and limited quantity of the DNA extracted from these samples can be extremely challenging during further analyses. Here we have reviewed how degradation, decomposition, and contamination can affect DNA analysis, and how correct sample collection and storage methods will ensure the best possible conditions for further genetic analysis. Furthermore, highly efficient protocols for collection, decontamination, and extraction of DNA from minute amounts of biological material are presented. </p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"17-22"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2013.0060","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40302961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
Targeting cryopreservation-induced cell death: a review. 靶向低温保存诱导细胞死亡:综述。
IF 1.6 4区 生物学
Biopreservation and Biobanking Pub Date : 2014-02-01 DOI: 10.1089/bio.2013.0032
A Bissoyi, Bismita Nayak, K Pramanik, Sunil K Sarangi
{"title":"Targeting cryopreservation-induced cell death: a review.","authors":"A Bissoyi,&nbsp;Bismita Nayak,&nbsp;K Pramanik,&nbsp;Sunil K Sarangi","doi":"10.1089/bio.2013.0032","DOIUrl":"https://doi.org/10.1089/bio.2013.0032","url":null,"abstract":"<p><p>Despite marked developments in the field of cryopreservation of cells and tissues for research and therapeutic applications, post-thaw cell death remains a significant drawback faced by cryobiologists. Post cryopreservation apoptosis and necrosis are normally observed within 6 to 24 h after post-thaw culture. As a result, massive loss of cell viability and cellular function occur due to cryopreservation. However, in this new generation of cryopreservation science, scientists in this field are focusing on incorporation of apoptosis and necrosis inhibitors (zVAD-fmk, p38 MAPK inhibitor, ROCK inhibitor, etc.) to cryopreservation and post-thaw culture media. These inhibitors target and inhibit various proteins such as caspases, proteases, and kinases, involved in the cell death cascade, resulting in reduced intensity of apoptosis and necrosis in the cryopreserved cells and tissues, increased cell viability, and maintenance of cellular function; thus improved overall cryopreservation efficiency is achieved. The present article provides an overview of various cell death pathways, molecules mediating cryopreservation-induced apoptosis and the potential of certain molecules in targeting cryopreservation-induced delayed-onset cell death. </p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":"12 1","pages":"23-34"},"PeriodicalIF":1.6,"publicationDate":"2014-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1089/bio.2013.0032","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40302962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 46
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