A Versatile, Secure, and Sustainable All-in-One Biobank-Registry Data Solution: The A3BC REDCap Model.

IF 1.2 4区 生物学 Q4 CELL BIOLOGY
Biopreservation and Biobanking Pub Date : 2022-06-01 Epub Date: 2021-11-22 DOI:10.1089/bio.2021.0098
Craig Willers, Tom Lynch, Vibhasha Chand, Mohammad Islam, Marissa Lassere, Lyn March
{"title":"A Versatile, Secure, and Sustainable All-in-One Biobank-Registry Data Solution: The A3BC REDCap Model.","authors":"Craig Willers,&nbsp;Tom Lynch,&nbsp;Vibhasha Chand,&nbsp;Mohammad Islam,&nbsp;Marissa Lassere,&nbsp;Lyn March","doi":"10.1089/bio.2021.0098","DOIUrl":null,"url":null,"abstract":"<p><p><b><i>Introduction:</i></b> A key element in the big data revolution is large-scale biobanking and the associated development of high-quality data collections and supporting informatics solutions. As such, in establishing the Australian Arthritis and Autoimmune Biobank Collaborative (A3BC), we sought to establish a low-cost, nation-scale data management system capable of managing a multisite biobank registry with complex longitudinal sample and data requirements. <b><i>Materials and Methods:</i></b> We assessed several international commercial and nonprofit software platforms using standardized system requirement criteria and follow-up interviews. Vendor compliance scoring was prioritized to meet our project-critical requirements. Consumer/end-user codesign was integral to refining our system requirements for optimized adoption. Customization of the selected software solution was performed to optimize field auto-population between participant timepoints and forms, using modules that are transferable and that do not impact core code. Institutional and independent testing was used to ensure data security. <b><i>Results:</i></b> We selected the widely used research web application Research Electronic Data Capture (REDCap), which is \"free\" (under nonprofit license agreement terms), highly configurable, and customizable to a variety of biobank and registry needs and can be developed/maintained by biobank users with modest IT skill, time, and cost. We created a secure, comprehensive participant-centric biobank-registry database that includes: (1) best practice data security measures (incl. multisite access login using institutional user credentials), (2) permission-to-contact and dynamic itemized electronic consent, (3) a complete chain of custody from consent to longitudinal biospecimen data collection to publication, (4) complex longitudinal patient-reported surveys, (5) integration of record-level extracted/linked participant data, (6) significant form auto-population for streamlined data capture, and (7) native dashboards for operational visualizations. <b><i>Conclusion:</i></b> We recommend the versatile, reusable, and sustainable informatics model we have developed in REDCap for prospective chronic disease biobanks or registry biobanks (of local to national complexity) supporting holistic research into disease prediction, precision medicine, and prevention strategies.</p>","PeriodicalId":49231,"journal":{"name":"Biopreservation and Biobanking","volume":" ","pages":"244-259"},"PeriodicalIF":1.2000,"publicationDate":"2022-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"3","resultStr":null,"platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biopreservation and Biobanking","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1089/bio.2021.0098","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2021/11/22 0:00:00","PubModel":"Epub","JCR":"Q4","JCRName":"CELL BIOLOGY","Score":null,"Total":0}
引用次数: 3

Abstract

Introduction: A key element in the big data revolution is large-scale biobanking and the associated development of high-quality data collections and supporting informatics solutions. As such, in establishing the Australian Arthritis and Autoimmune Biobank Collaborative (A3BC), we sought to establish a low-cost, nation-scale data management system capable of managing a multisite biobank registry with complex longitudinal sample and data requirements. Materials and Methods: We assessed several international commercial and nonprofit software platforms using standardized system requirement criteria and follow-up interviews. Vendor compliance scoring was prioritized to meet our project-critical requirements. Consumer/end-user codesign was integral to refining our system requirements for optimized adoption. Customization of the selected software solution was performed to optimize field auto-population between participant timepoints and forms, using modules that are transferable and that do not impact core code. Institutional and independent testing was used to ensure data security. Results: We selected the widely used research web application Research Electronic Data Capture (REDCap), which is "free" (under nonprofit license agreement terms), highly configurable, and customizable to a variety of biobank and registry needs and can be developed/maintained by biobank users with modest IT skill, time, and cost. We created a secure, comprehensive participant-centric biobank-registry database that includes: (1) best practice data security measures (incl. multisite access login using institutional user credentials), (2) permission-to-contact and dynamic itemized electronic consent, (3) a complete chain of custody from consent to longitudinal biospecimen data collection to publication, (4) complex longitudinal patient-reported surveys, (5) integration of record-level extracted/linked participant data, (6) significant form auto-population for streamlined data capture, and (7) native dashboards for operational visualizations. Conclusion: We recommend the versatile, reusable, and sustainable informatics model we have developed in REDCap for prospective chronic disease biobanks or registry biobanks (of local to national complexity) supporting holistic research into disease prediction, precision medicine, and prevention strategies.

一个多功能,安全和可持续的一体化生物库注册数据解决方案:A3BC REDCap模型。
导论:大数据革命的一个关键因素是大规模生物银行和相关的高质量数据收集和支持信息学解决方案的开发。因此,在建立澳大利亚关节炎和自身免疫性生物库协作(A3BC)时,我们寻求建立一个低成本的、全国性的数据管理系统,能够管理具有复杂纵向样本和数据要求的多站点生物库注册。材料和方法:我们使用标准化的系统需求标准和后续访谈评估了几个国际商业和非营利软件平台。供应商遵从性评分被优先化以满足我们的项目关键需求。消费者/最终用户协同设计对于优化采用我们的系统需求是不可或缺的。使用可转移且不影响核心代码的模块,执行所选软件解决方案的定制,以优化参与者时间点和表单之间的字段自动填充。采用机构和独立测试,确保数据安全。结果:我们选择了广泛使用的研究网络应用程序研究电子数据捕获(REDCap),它是“免费的”(根据非营利性许可协议条款),高度可配置,可定制各种生物库和注册需求,并且可以由生物库用户以适度的IT技能,时间和成本开发/维护。我们创建了一个安全、全面、以参与者为中心的生物库注册数据库,其中包括:(1)最佳实践数据安全措施(包括使用机构用户凭证的多站点访问登录),(2)接触许可和动态逐项电子同意,(3)从同意到纵向生物标本数据收集到发布的完整监管链,(4)复杂的纵向患者报告调查,(5)记录级提取/链接参与者数据的集成,(6)重要的表格自动填入,简化数据捕获,(7)用于操作可视化的本机仪表板。结论:我们推荐我们在REDCap中开发的多功能、可重复使用和可持续的信息学模型,用于前瞻性慢性病生物库或注册生物库(从地方到国家的复杂性),支持疾病预测、精准医学和预防策略的整体研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
求助全文
约1分钟内获得全文 求助全文
来源期刊
Biopreservation and Biobanking
Biopreservation and Biobanking CELL BIOLOGY-MEDICAL LABORATORY TECHNOLOGY
CiteScore
3.30
自引率
12.50%
发文量
114
审稿时长
6-12 weeks
期刊介绍: Biopreservation and Biobanking is the first journal to provide a unifying forum for the peer-reviewed communication of recent advances in the emerging and evolving field of biospecimen procurement, processing, preservation and banking, distribution, and use. The Journal publishes a range of original articles focusing on current challenges and problems in biopreservation, and advances in methods to address these issues related to the processing of macromolecules, cells, and tissues for research. In a new section dedicated to Emerging Markets and Technologies, the Journal highlights the emergence of new markets and technologies that are either adopting or disrupting the biobank framework as they imprint on society. The solutions presented here are anticipated to help drive innovation within the biobank community. Biopreservation and Biobanking also explores the ethical, legal, and societal considerations surrounding biobanking and biorepository operation. Ideas and practical solutions relevant to improved quality, efficiency, and sustainability of repositories, and relating to their management, operation and oversight are discussed as well.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信