Network Neuroscience最新文献_第3页

Brain signaling becomes less integrated and more segregated with age. 随着年龄的增长，大脑信号变得越来越不整合，越来越分离。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-12-10 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00389

Rostam M Razban, Botond B Antal, Ken A Dill, Lilianne R Mujica-Parodi

引用次数: 0

The impact of functional correlations on task information coding. 功能关联对任务信息编码的影响。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-12-10 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00402

Takuya Ito, John D Murray

{"title":"The impact of functional correlations on task information coding.","authors":"Takuya Ito, John D Murray","doi":"10.1162/netn_a_00402","DOIUrl":"10.1162/netn_a_00402","url":null,"abstract":"State-dependent neural correlations can be understood from a neural coding framework. Noise correlations-trial-to-trial or moment-to-moment covariability-can be interpreted only if the underlying signal correlation-similarity of task selectivity between pairs of neural units-is known. Despite many investigations in local spiking circuits, it remains unclear how this coding framework applies to large-scale brain networks. Here, we investigated relationships between large-scale noise correlations and signal correlations in a multitask human fMRI dataset. We found that task-state noise correlation changes (e.g., functional connectivity) did not typically change in the same direction as their underlying signal correlation (e.g., tuning similarity of two regions). Crucially, noise correlations that changed in the opposite direction as their signal correlation (i.e., anti-aligned correlations) improved information coding of these brain regions. In contrast, noise correlations that changed in the same direction (aligned noise correlations) as their signal correlation did not. Interestingly, these aligned noise correlations were primarily correlation increases, suggesting that most functional correlation increases across fMRI networks actually degrade information coding. These findings illustrate that state-dependent noise correlations shape information coding of functional brain networks, with interpretation of correlation changes requiring knowledge of underlying signal correlations.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 4","pages":"1331-1354"},"PeriodicalIF":3.6,"publicationDate":"2024-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11675092/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142903822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A spatially constrained independent component analysis jointly informed by structural and functional network connectivity. 基于结构和功能网络连通性的空间约束独立分量分析。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-12-10 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00398

Mahshid Fouladivanda, Armin Iraji, Lei Wu, Theo G M van Erp, Aysenil Belger, Faris Hawamdeh, Godfrey D Pearlson, Vince D Calhoun

{"title":"A spatially constrained independent component analysis jointly informed by structural and functional network connectivity.","authors":"Mahshid Fouladivanda, Armin Iraji, Lei Wu, Theo G M van Erp, Aysenil Belger, Faris Hawamdeh, Godfrey D Pearlson, Vince D Calhoun","doi":"10.1162/netn_a_00398","DOIUrl":"10.1162/netn_a_00398","url":null,"abstract":"There are a growing number of neuroimaging studies motivating joint structural and functional brain connectivity. The brain connectivity of different modalities provides an insight into brain functional organization by leveraging complementary information, especially for brain disorders such as schizophrenia. In this paper, we propose a multimodal independent component analysis (ICA) model that utilizes information from both structural and functional brain connectivity guided by spatial maps to estimate intrinsic connectivity networks (ICNs). Structural connectivity is estimated through whole-brain tractography on diffusion-weighted MRI (dMRI), while functional connectivity is derived from resting-state functional MRI (rs-fMRI). The proposed structural-functional connectivity and spatially constrained ICA (sfCICA) model estimates ICNs at the subject level using a multiobjective optimization framework. We evaluated our model using synthetic and real datasets (including dMRI and rs-fMRI from 149 schizophrenia patients and 162 controls). Multimodal ICNs revealed enhanced functional coupling between ICNs with higher structural connectivity, improved modularity, and network distinction, particularly in schizophrenia. Statistical analysis of group differences showed more significant differences in the proposed model compared with the unimodal model. In summary, the sfCICA model showed benefits from being jointly informed by structural and functional connectivity. These findings suggest advantages in simultaneously learning effectively and enhancing connectivity estimates using structural connectivity.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 4","pages":"1212-1242"},"PeriodicalIF":3.6,"publicationDate":"2024-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674407/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142903902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A generative model of the connectome with dynamic axon growth. 具有动态轴突生长的连接体生成模型。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-12-10 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00397

Yuanzhe Liu, Caio Seguin, Richard F Betzel, Daniel Han, Danyal Akarca, Maria A Di Biase, Andrew Zalesky

{"title":"A generative model of the connectome with dynamic axon growth.","authors":"Yuanzhe Liu, Caio Seguin, Richard F Betzel, Daniel Han, Danyal Akarca, Maria A Di Biase, Andrew Zalesky","doi":"10.1162/netn_a_00397","DOIUrl":"10.1162/netn_a_00397","url":null,"abstract":"Connectome generative models, otherwise known as generative network models, provide insight into the wiring principles underpinning brain network organization. While these models can approximate numerous statistical properties of empirical networks, they typically fail to explicitly characterize an important contributor to brain organization-axonal growth. Emulating the chemoaffinity-guided axonal growth, we provide a novel generative model in which axons dynamically steer the direction of propagation based on distance-dependent chemoattractive forces acting on their growth cones. This simple dynamic growth mechanism, despite being solely geometry-dependent, is shown to generate axonal fiber bundles with brain-like geometry and features of complex network architecture consistent with the human brain, including lognormally distributed connectivity weights, scale-free nodal degrees, small-worldness, and modularity. We demonstrate that our model parameters can be fitted to individual connectomes, enabling connectome dimensionality reduction and comparison of parameters between groups. Our work offers an opportunity to bridge studies of axon guidance and connectome development, providing new avenues for understanding neural development from a computational perspective.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 4","pages":"1192-1211"},"PeriodicalIF":3.6,"publicationDate":"2024-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674315/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142903966","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Developmental differences in canonical cortical networks: Insights from microstructure-informed tractography. 典型皮质网络的发育差异：微观结构信息牵引成像的启示

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-10-01 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00378

Sila Genc, Simona Schiavi, Maxime Chamberland, Chantal M W Tax, Erika P Raven, Alessandro Daducci, Derek K Jones

{"title":"Developmental differences in canonical cortical networks: Insights from microstructure-informed tractography.","authors":"Sila Genc, Simona Schiavi, Maxime Chamberland, Chantal M W Tax, Erika P Raven, Alessandro Daducci, Derek K Jones","doi":"10.1162/netn_a_00378","DOIUrl":"10.1162/netn_a_00378","url":null,"abstract":"In response to a growing interest in refining brain connectivity assessments, this study focuses on integrating white matter fiber-specific microstructural properties into structural connectomes. Spanning ages 8-19 years in a developmental sample, it explores age-related patterns of microstructure-informed network properties at both local and global scales. First, the diffusion-weighted signal fraction associated with each tractography-reconstructed streamline was constructed. Subsequently, the convex optimization modeling for microstructure-informed tractography (COMMIT) approach was employed to generate microstructure-informed connectomes from diffusion MRI data. To complete the investigation, network characteristics within eight functionally defined networks (visual, somatomotor, dorsal attention, ventral attention, limbic, fronto-parietal, default mode, and subcortical networks) were evaluated. The findings underscore a consistent increase in global efficiency across child and adolescent development within the visual, somatomotor, and default mode networks (p < 0.005). Additionally, mean strength exhibits an upward trend in the somatomotor and visual networks (p < 0.001). Notably, nodes within the dorsal and ventral visual pathways manifest substantial age-dependent changes in local efficiency, aligning with existing evidence of extended maturation in these pathways. The outcomes strongly support the notion of a prolonged developmental trajectory for visual association cortices. This study contributes valuable insights into the nuanced dynamics of microstructure-informed brain connectivity throughout different developmental stages.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 3","pages":"946-964"},"PeriodicalIF":3.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11424039/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142362331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Frequency modulation increases the specificity of time-resolved connectivity: A resting-state fMRI study. 频率调制提高了时间分辨连通性的特异性：静息态 fMRI 研究。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-10-01 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00372

Ashkan Faghiri, Kun Yang, Andreia Faria, Koko Ishizuka, Akira Sawa, Tülay Adali, Vince Calhoun

{"title":"Frequency modulation increases the specificity of time-resolved connectivity: A resting-state fMRI study.","authors":"Ashkan Faghiri, Kun Yang, Andreia Faria, Koko Ishizuka, Akira Sawa, Tülay Adali, Vince Calhoun","doi":"10.1162/netn_a_00372","DOIUrl":"10.1162/netn_a_00372","url":null,"abstract":"Representing data using time-resolved networks is valuable for analyzing functional data of the human brain. One commonly used method for constructing time-resolved networks from data is sliding window Pearson correlation (SWPC). One major limitation of SWPC is that it applies a high-pass filter to the activity time series. Therefore, if we select a short window (desirable to estimate rapid changes in connectivity), we will remove important low-frequency information. Here, we propose an approach based on single sideband modulation (SSB) in communication theory. This allows us to select shorter windows to capture rapid changes in the time-resolved functional network connectivity (trFNC). We use simulation and real resting-state functional magnetic resonance imaging (fMRI) data to demonstrate the superior performance of SSB+SWPC compared to SWPC. We also compare the recurring trFNC patterns between individuals with the first episode of psychosis (FEP) and typical controls (TC) and show that FEPs stay more in states that show weaker connectivity across the whole brain. A result exclusive to SSB+SWPC is that TCs stay more in a state with negative connectivity between subcortical and cortical regions. Based on all the results, we argue that SSB+SWPC is more sensitive for capturing temporal variation in trFNC.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 3","pages":"734-761"},"PeriodicalIF":3.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11349031/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142362332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Network-level enrichment provides a framework for biological interpretation of machine learning results. 网络级富集为机器学习结果的生物学解释提供了一个框架。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-10-01 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00383

Jiaqi Li, Ari Segel, Xinyang Feng, Jiaxin Cindy Tu, Andy Eck, Kelsey T King, Babatunde Adeyemo, Nicole R Karcher, Likai Chen, Adam T Eggebrecht, Muriah D Wheelock

{"title":"Network-level enrichment provides a framework for biological interpretation of machine learning results.","authors":"Jiaqi Li, Ari Segel, Xinyang Feng, Jiaxin Cindy Tu, Andy Eck, Kelsey T King, Babatunde Adeyemo, Nicole R Karcher, Likai Chen, Adam T Eggebrecht, Muriah D Wheelock","doi":"10.1162/netn_a_00383","DOIUrl":"10.1162/netn_a_00383","url":null,"abstract":"Machine learning algorithms are increasingly being utilized to identify brain connectivity biomarkers linked to behavioral and clinical outcomes. However, research often prioritizes prediction accuracy at the expense of biological interpretability, and inconsistent implementation of ML methods may hinder model accuracy. To address this, our paper introduces a network-level enrichment approach, which integrates brain system organization in the context of connectome-wide statistical analysis to reveal network-level links between brain connectivity and behavior. To demonstrate the efficacy of this approach, we used linear support vector regression (LSVR) models to examine the relationship between resting-state functional connectivity networks and chronological age. We compared network-level associations based on raw LSVR weights to those produced from the forward and inverse models. Results indicated that not accounting for shared family variance inflated prediction performance, the k-best feature selection via Pearson correlation reduced accuracy and reliability, and raw LSVR model weights produced network-level associations that deviated from the significant brain systems identified by forward and inverse models. Our findings offer crucial insights for applying machine learning to neuroimaging data, emphasizing the value of network enrichment for biological interpretation.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 3","pages":"762-790"},"PeriodicalIF":3.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11349033/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142362333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Individual variability in neural representations of mind-wandering. 思维游走神经表征的个体差异性

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-10-01 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00387

Aaron Kucyi, Nathan Anderson, Tiara Bounyarith, David Braun, Lotus Shareef-Trudeau, Isaac Treves, Rodrigo M Braga, Po-Jang Hsieh, Shao-Min Hung

{"title":"Individual variability in neural representations of mind-wandering.","authors":"Aaron Kucyi, Nathan Anderson, Tiara Bounyarith, David Braun, Lotus Shareef-Trudeau, Isaac Treves, Rodrigo M Braga, Po-Jang Hsieh, Shao-Min Hung","doi":"10.1162/netn_a_00387","DOIUrl":"10.1162/netn_a_00387","url":null,"abstract":"Mind-wandering is a frequent, daily mental activity, experienced in unique ways in each person. Yet neuroimaging evidence relating mind-wandering to brain activity, for example in the default mode network (DMN), has relied on population- rather than individual-based inferences owing to limited within-person sampling. Here, three densely sampled individuals each reported hundreds of mind-wandering episodes while undergoing multi-session functional magnetic resonance imaging. We found reliable associations between mind-wandering and DMN activation when estimating brain networks within individuals using precision functional mapping. However, the timing of spontaneous DMN activity relative to subjective reports, and the networks beyond DMN that were activated and deactivated during mind-wandering, were distinct across individuals. Connectome-based predictive modeling further revealed idiosyncratic, whole-brain functional connectivity patterns that consistently predicted mind-wandering within individuals but did not fully generalize across individuals. Predictive models of mind-wandering and attention that were derived from larger-scale neuroimaging datasets largely failed when applied to densely sampled individuals, further highlighting the need for personalized models. Our work offers novel evidence for both conserved and variable neural representations of self-reported mind-wandering in different individuals. The previously unrecognized interindividual variations reported here underscore the broader scientific value and potential clinical utility of idiographic approaches to brain-experience associations.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 3","pages":"808-836"},"PeriodicalIF":3.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11349032/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142362706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Analyzing asymmetry in brain hierarchies with a linear state-space model of resting-state fMRI data. 利用静息态 fMRI 数据的线性状态空间模型分析大脑层次结构的不对称性。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-10-01 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00381

Danilo Benozzo, Giacomo Baggio, Giorgia Baron, Alessandro Chiuso, Sandro Zampieri, Alessandra Bertoldo

{"title":"Analyzing asymmetry in brain hierarchies with a linear state-space model of resting-state fMRI data.","authors":"Danilo Benozzo, Giacomo Baggio, Giorgia Baron, Alessandro Chiuso, Sandro Zampieri, Alessandra Bertoldo","doi":"10.1162/netn_a_00381","DOIUrl":"10.1162/netn_a_00381","url":null,"abstract":"This study challenges the traditional focus on zero-lag statistics in resting-state functional magnetic resonance imaging (rsfMRI) research. Instead, it advocates for considering time-lag interactions to unveil the directionality and asymmetries of the brain hierarchy. Effective connectivity (EC), the state matrix in dynamical causal modeling (DCM), is a commonly used metric for studying dynamical properties and causal interactions within a linear state-space system description. Here, we focused on how time-lag statistics are incorporated within the framework of DCM resulting in an asymmetric EC matrix. Our approach involves decomposing the EC matrix, revealing a steady-state differential cross-covariance matrix that is responsible for modeling information flow and introducing time-irreversibility. Specifically, the system's dynamics, influenced by the off-diagonal part of the differential covariance, exhibit a curl steady-state flow component that breaks detailed balance and diverges the dynamics from equilibrium. Our empirical findings indicate that the EC matrix's outgoing strengths correlate with the flow described by the differential cross covariance, while incoming strengths are primarily driven by zero-lag covariance, emphasizing conditional independence over directionality.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 3","pages":"965-988"},"PeriodicalIF":3.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11424037/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142362329","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Propagation of transient explosive synchronization in a mesoscale mouse brain network model of epilepsy. 癫痫中尺度小鼠大脑网络模型中的瞬时爆发性同步传播。

IF 3.6 3区医学

Network Neuroscience Pub Date : 2024-10-01 eCollection Date: 2024-01-01 DOI: 10.1162/netn_a_00379

Avinash Ranjan, Saurabh R Gandhi

{"title":"Propagation of transient explosive synchronization in a mesoscale mouse brain network model of epilepsy.","authors":"Avinash Ranjan, Saurabh R Gandhi","doi":"10.1162/netn_a_00379","DOIUrl":"10.1162/netn_a_00379","url":null,"abstract":"Generalized epileptic attacks, which exhibit widespread disruption of brain activity, are characterized by recurrent, spontaneous, and synchronized bursts of neural activity that self-initiate and self-terminate through critical transitions. Here we utilize the general framework of explosive synchronization (ES) from complex systems science to study the role of network structure and resource dynamics in the generation and propagation of seizures. We show that a combination of resource constraint and adaptive coupling in a Kuramoto network oscillator model can reliably generate seizure-like synchronization activity across different network topologies, including a biologically derived mesoscale mouse brain network. The model, coupled with a novel algorithm for tracking seizure propagation, provides mechanistic insight into the dynamics of transition to the synchronized state and its dependence on resources; and identifies key brain areas that may be involved in the initiation and spatial propagation of the seizure. The model, though minimal, efficiently recapitulates several experimental and theoretical predictions from more complex models and makes novel experimentally testable predictions.","PeriodicalId":48520,"journal":{"name":"Network Neuroscience","volume":"8 3","pages":"883-901"},"PeriodicalIF":3.6,"publicationDate":"2024-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11398721/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142362334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0