{"title":"Lipoxygenase in Adaptation of the Neurospora crassa Cells to Temperature Stress","authors":"S. Yu. Filippovich, G. P. Bachurina","doi":"10.1134/S0003683824604864","DOIUrl":"10.1134/S0003683824604864","url":null,"abstract":"<p>The adaptation of the <i>N. crassa</i> lipoxygenase (LOX) in response to heat (45°C) and cold (4°C) shock was studied. The difference was revealed in the dynamics of the LOX activity depending on the growing conditions of the mycelium. After incubation of the surface culture at 45°C, a gradual increase in the specific activity of the enzyme was observed with maximum at 2–3 h, followed by a subsequent decrease to the initial level. Under the same conditions, in a submerged culture, a decrease in the LOX activity was observed after 5 min; however, after 1 h of incubation, the enzyme activity also reached the initial level. The sensitivity of the <i>N. crassa</i> LOX to elevated temperatures is very high, since it is noted only in a narrow temperature range: the effect was detected at 45<sup>o</sup>C; however, the enzymatic activity did not change in the culture incubated at 42°C, but, on the other hand, LOX was completely inactivated in the mycelium at 48°C. When the fungal cells were exposed to cold, the specific LOX activity increased after 1 h, then decreased to the initial level (2–3 h) and increased again, reaching a maximum after 18 h. When two stress factors, cold and starvation, acted simultaneously on the <i>N. crassa</i> cells, the treatment with cold had a decisive effect on the LOX activity, which was especially noticeable after 8 h of incubation.</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1171 - 1176"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844884","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
G. M. Sviridenko, D. S. Vakhrusheva, O. M. Shukhalova, D. S. Mamykin, V. A. Mordvinova
{"title":"Characteristics of Growth and Metabolism of Lacticaseibacillus casei in Model Milk Media and Semi-Hard Cheeses","authors":"G. M. Sviridenko, D. S. Vakhrusheva, O. M. Shukhalova, D. S. Mamykin, V. A. Mordvinova","doi":"10.1134/S0003683824604980","DOIUrl":"10.1134/S0003683824604980","url":null,"abstract":"<p>This paper presents the results of a study of the dynamics of growth and metabolism of <i>Lacticaseibacillus casei</i> production strains in model milk media and semi-hard cheeses. In dairy media under optimal conditions, the maximum number of viable cells of the studied <i>Lacticaseibacillus casei</i> strains was achieved on day 3; an increase in titratable acidity continued for up to 7‒10 days. In model dairy media simulating cheese ripening conditions, the growth and metabolism (glycolysis, proteolysis, and production of volatile aroma compounds) of <i>Lacticaseibacillus casei</i> slowed down. In semi-hard cheeses, the <i>Lacticaseibacillus</i> <i>casei</i> culture (as an independent acid-generating starter component), did not provide the required intensity of acid formation during the production process. However, as an adjunct culture, it intensified proteolysis and the processes of gas and aroma formation during ripening, thus, improving the organoleptic characteristics of cheeses.</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1351 - 1362"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. L. Bryukhanov, A. S. Shutova, K. A. Komarova, T. A. Semenova, A. A. Semenov, V. A. Karpov
{"title":"Phylogenetic Composition of Microbial Communities from Fouling of Titanium Plates in the Coastal Zone of the Black and White Seas","authors":"A. L. Bryukhanov, A. S. Shutova, K. A. Komarova, T. A. Semenova, A. A. Semenov, V. A. Karpov","doi":"10.1134/S0003683824605195","DOIUrl":"10.1134/S0003683824605195","url":null,"abstract":"<p>With high-throughput sequencing of the variable region V3–V4 of the 16S rRNA gene, the study of the full phylogenetic composition of microbial communities developed on the surface of titanium plates exposed in the water column of the coastal zone of the Black and White Seas was carried out. The presence of potentially corrosive microorganisms from various physiological groups, such as sulfate-reducing bacteria, acidophilic iron-oxidizing bacteria and archaea, sulfur-oxidizing and nitrifying bacteria, was shown in the fouling. In the fouling of titanium plates exposed in the Black Sea, the most common microorganisms were uncultivated sulfate-reducing bacteria of the order <i>Desulfotomaculales</i>, which accounted for 8.13% of all 16S rRNA gene sequence reads, as well as acidophilic iron-oxidizing bacteria of the genera <i>Acidiferrobacter</i> (5.47%), <i>Acidithiobacillus</i> (4.52%), and <i>Acidiphilium</i> (2.55%). Acidophilic archaea accounted for up to 7.97% of all reads. In the fouling of titanium plates exposed in the White Sea, the most common were also acidophilic bacteria from the orders <i>Acidiferrobacterales</i> and <i>Acidithiobacillales</i> (7.68%), as well as acidophilic archaea from the order <i>Thermoplasmatales</i> (7.43%). Uncultivated sulfate-reducing bacteria of the order <i>Desulfotomaculales</i> were also represented in relatively high numbers (6.61% of all reads).</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1259 - 1265"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Proteome Analysis of the Nitric Oxide Donor Effect on Pisum Sativum L. Roots","authors":"A. M. Egorova, I. A. Tarchevsky","doi":"10.1134/S0003683824604694","DOIUrl":"10.1134/S0003683824604694","url":null,"abstract":"<p>Proteomic analysis of the NO donor–sodium nitroprusside effect on pea seedlings roots revealed a high degree of induction of the platform propeller protein WD40, PR10, ferritin, and the chitinase-like protein. Less induction was observed for ABR17, the endochitinase-like protein, enzymes of phytoalexins synthesis, and proline iminopeptidase, which releases proline from proline-enriched proteins, and UTP-glucose-1-P-uridylyl transferase involved in the synthesis of cellulose and callose. Some of these defense compounds, such as endochitinase, chitinase-like protein, and phenolic phytoalexins, are transported into the rhizosphere and may influence the rhizosphere microbiome. There are examples of the use of NO defense properties in agrotechnology both for treating plants with NO donors and for creating stress-resistant transgenic plants with a high content of NO or compounds induced by it (ferritin, etc.).</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1292 - 1300"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. V. Kamzolova, V. A. Samoylenko, R. K. Allayarov, A. A. Mironov, Y. N. Lunina, N. E. Vorobyeva, A. A. Shaikin, M. B. Vainshtein
{"title":"Biosynthesis of Citric Acid from Glucose–Fructose Syrups by the Yeast Yarrowia lipolitica","authors":"S. V. Kamzolova, V. A. Samoylenko, R. K. Allayarov, A. A. Mironov, Y. N. Lunina, N. E. Vorobyeva, A. A. Shaikin, M. B. Vainshtein","doi":"10.1134/S0003683824604074","DOIUrl":"10.1134/S0003683824604074","url":null,"abstract":"<p>Glucose–fructose syrups were studied for the first time as a carbon source for the biosynthesis of citric acid (CA) by the yeast <i>Yarrowia lipolytica</i>. The producer <i>Y. lipolytica</i> VKM Y-2373 was selected, and the growth conditions were optimized (syrup concentration, 30 g/L; pH, 6.0; aeration, 20% of saturation). The study found that the concentration of ammonium sulfate in the medium had a significant impact on CA production by <i>Y. lipolytica</i>. The maximum CA production was observed at a concentration of 2 g/L (NH<sub>4</sub>)<sub>2</sub>SO<sub>4</sub>, while concentrations of 1.5 and 3.0 g/L resulted in a decrease of 12 and 30%, respectively. Under the selected conditions, <i>Y. lipolytica</i> VKM Y-2373 produced 36.7 g/L CA in a medium containing glucose–fructose syrup with 52% glucose and 57.7 g/L CA with syrup containing 92% glucose.</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1252 - 1258"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Entomopathogenic Fungi of the Genus Akanthomyces and Closely Related Species as Antagonists of Phytopathogenic Microorganisms","authors":"A. A. Choglokova, G. V. Mitina, M. A. Cherepanova","doi":"10.1134/S0003683824604852","DOIUrl":"10.1134/S0003683824604852","url":null,"abstract":"<p>The antagonistic activity and its features were assessed for 20 strains and isolates of entomopathogenic fungi of the genus <i>Akanthomyces</i> and closely related species against eight species of phytopathogenic fungi and four variants of bacteria in vitro<i>.</i> Isolates of the species <i>Akanthomyces muscarius</i> Vl 21, Vl 29, Vl 61, Vl 72, and F 14 were selected. They showed antagonism against 5–6 species of dangerous phytopathogenic fungi (in particular, causative agents of various rots and leaf spots). Their volatile organic compounds also had a pronounced fungistatic effect, and the inhibition rate reached up to 67%. These isolates are promising for use in protecting plants from a complex of fungal diseases and pests.</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1321 - 1327"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Modern Methods for the Isolation and Identification of Peptaibols from Filamentos Fungi","authors":"V. V. Sokolov, A. E. Kuvarina, V. S. Sadykova","doi":"10.1134/S0003683824605547","DOIUrl":"10.1134/S0003683824605547","url":null,"abstract":"<p>Peptaibols are linear or cyclic peptide antibiotics (peptabiotics) characterized by the presence of a non-proteinogenic alpha-aminoisobutyric amino acid produced by filamentous fungi from the Ascomycota phylum. They exhibit a wide range of biological activities against various microbial pathogens, protozoa, viruses, and tumor cells. In this review we described methods for the fungi cultivation, isolation, screening, purification, as well as peptaibol characterization andtheir biological activities. Currently many techniques for each step of their isolation are known, and we will focus on the most commonly used and recently developed chromatographic and spectroscopic methods for their extraction and identification.</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1074 - 1086"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142845046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
N. N. Sykilinda, A. A. Lukyanova, V. V. Lavrikova, I. V. Kutnik, N. V. Panin, N. A. Staritsyn, K. A. Miroshnikov
{"title":"Erratum to: The Effect of Space Flight Factors on the Interaction of Escherichia coli with Bacteriophage T7","authors":"N. N. Sykilinda, A. A. Lukyanova, V. V. Lavrikova, I. V. Kutnik, N. V. Panin, N. A. Staritsyn, K. A. Miroshnikov","doi":"10.1134/S0003683824030025","DOIUrl":"10.1134/S0003683824030025","url":null,"abstract":"","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1429 - 1429"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1134/S0003683824030025.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
K. V. Moiseenko, O. A. Glazunova, O. S. Savinova, T. V. Fedorova
{"title":"Comparison of Genomes, Resistomes, and Antimicrobial Properties of the Three Lactococcus lactis Strains from Fermented Milk and Cereal Products of South Africa and Russia","authors":"K. V. Moiseenko, O. A. Glazunova, O. S. Savinova, T. V. Fedorova","doi":"10.1134/S0003683824606012","DOIUrl":"10.1134/S0003683824606012","url":null,"abstract":"<p>Whole-genome sequencing was carried out, and the main characteristics of the genomes of three new strains of <i>L. lactis</i> AM1, MA1, and dlA, isolated from fermented milk and cereal grain products of South Africa and Russia, were established. The dual approach of in vitro and in silico analysis used in this work allowed us to assess more fully the bacteriocinogenic potential and antibiotic resistance of <i>L. lactis</i> strains. It was shown that <i>L. lactis</i> AM1 and dlA had an antagonistic effect against the test cultures of <i>Escherichia coli</i> ATCC 25922 and <i>Staphylococcus aureus</i> ATCC 6538. The growth retardation of <i>E. coli</i> and <i>S. aureus</i> after 48 hours of cocultivation was 65–75 and 30–50%, respectively. The <i>L. lactis</i> MA1 strain did not exhibit a significant antagonistic effect; the growth inhibition of <i>E. coli</i> and <i>S. aureus</i> was 13 and 26%, respectively. According to the results of in silico analysis using the BAGELv4.0 service, gene clusters of class IId lactococcin-like bacteriocins were found in the genomes of all three strains. In the genomes of the dlA and AM1 strains, the sactipeptide cluster, a class I bacteriocin, is additionally annotated. In silico analysis of the <i>L. lactis</i> genomes showed the absence of transmissible antibiotic resistance genes, and all three strains showed a phenotype susceptible to the main classes of clinically relevant antibiotics (ampicillin, streptomycin, kanamycin, gentamicin, erythromycin, clindamycin, vancomycin, tetracycline, and chloramphenicol). Taken together, the results provide valuable information about the intraspecific diversity of <i>L. lactis</i> and indicate the promise of using new strains as starter cultures and biopreservatives.</p>","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1223 - 1239"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1134/S0003683824606012.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844883","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. A. Klimova, I. V. Grigoriev, D. V. Vasina, M. N. Anurova, V. A. Gushchin, N. P. Antonova
{"title":"Erratum to: Development of Immunoassay for Detection of Engineered Endolysin LysAm24-SMAP","authors":"A. A. Klimova, I. V. Grigoriev, D. V. Vasina, M. N. Anurova, V. A. Gushchin, N. P. Antonova","doi":"10.1134/S0003683824030013","DOIUrl":"10.1134/S0003683824030013","url":null,"abstract":"","PeriodicalId":466,"journal":{"name":"Applied Biochemistry and Microbiology","volume":"60 6","pages":"1428 - 1428"},"PeriodicalIF":1.0,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://link.springer.com/content/pdf/10.1134/S0003683824030013.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142844776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}