Global Health Epidemiology and Genomics最新文献

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Confirming Multiplex RT-qPCR Use in COVID-19 with Next-Generation Sequencing: Strategies for Epidemiological Advantage. 新一代测序证实多重RT-qPCR在COVID-19中的应用:流行病学优势策略
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2022-07-30 eCollection Date: 2022-01-01 DOI: 10.1155/2022/2270965
Rob E Carpenter, Vaibhav Tamrakar, Harendra Chahar, Tyler Vine, Rahul Sharma
{"title":"Confirming Multiplex RT-qPCR Use in COVID-19 with Next-Generation Sequencing: Strategies for Epidemiological Advantage.","authors":"Rob E Carpenter,&nbsp;Vaibhav Tamrakar,&nbsp;Harendra Chahar,&nbsp;Tyler Vine,&nbsp;Rahul Sharma","doi":"10.1155/2022/2270965","DOIUrl":"https://doi.org/10.1155/2022/2270965","url":null,"abstract":"<p><p>Rapid identification and tracking of emerging SARS-CoV-2 variants are critical for understanding the transmission dynamics and developing strategies for interrupting the transmission chain. Next-Generation Sequencing (NGS) is an exceptional tool for whole-genome analysis and deciphering new mutations. The technique has been instrumental in identifying the variants of concern (VOC) and tracking this pandemic. However, NGS is complex and expensive for large-scale adoption, and epidemiological monitoring with NGS alone could be unattainable in limited-resource settings. In this study, we explored the application of RT-qPCR-based detection of the variant identified by NGS. We analyzed a total of 78 deidentified samples that screened positive for SARS-CoV-2 from two timeframes, August 2020 and July 2021. All 78 samples were classified into WHO lineages by whole-genome sequencing and then compared with two commercially available RT-qPCR assays for spike protein mutation(s). The data showed good concordance between RT-qPCR and NGS analysis for specific SARS-CoV-2 lineages and characteristic mutations. RT-qPCR assays are quick and cost-effective and thus can be implemented in synergy with NGS for screening NGS-identified mutations of SARS-CoV-2 for clinical and epidemiological interest. Strategic use of NGS and RT-qPCR can offer several COVID-19 epidemiological advantages.</p>","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":" ","pages":"2270965"},"PeriodicalIF":1.9,"publicationDate":"2022-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9339135/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40684651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Practice towards Prevention and Control Measures of Coronavirus Disease and Associated Factors among Healthcare Workers in the Health Facilities of the Horo Guduru Wollega Zone, West Ethiopia, 2021. 2021年西埃塞俄比亚霍罗古杜鲁沃勒加地区卫生机构医护人员冠状病毒病防控措施及相关因素实践
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2022-06-28 eCollection Date: 2022-01-01 DOI: 10.1155/2022/1973502
Atoma Negera, Chernet Hailu, Addis Birhanu
{"title":"Practice towards Prevention and Control Measures of Coronavirus Disease and Associated Factors among Healthcare Workers in the Health Facilities of the Horo Guduru Wollega Zone, West Ethiopia, 2021.","authors":"Atoma Negera,&nbsp;Chernet Hailu,&nbsp;Addis Birhanu","doi":"10.1155/2022/1973502","DOIUrl":"https://doi.org/10.1155/2022/1973502","url":null,"abstract":"<p><strong>Background: </strong>A novel coronavirus, a virus that causes coronavirus disease (COVID-19), was first identified in Wuhan, China, on December 2019. The virus affects the respiratory system and it is highly contagious, spreading from person to person. Healthcare workers are more at risk due to the nature of their work, which is caring for both COVID-19-affected and nonaffected patients. Lack of knowledge about the disease directly affects early diagnosis and treatment, which may result in the rapid spread of the infection in the community. Having enough knowledge about a disease can always affect an individual's attitudes and practices. However, there is limited evidence on the knowledge, attitude, practice of prevention, and control measures of COVID-19 and associated factors among healthcare workers (HCWs) in resource-limited countries, including Ethiopia.</p><p><strong>Methods: </strong>A facility-based cross-sectional study design was used among 334 samples of health workers who were selected using a stratified two-stage sampling technique, from health facilities of the Horo Guduru Wollega Zone from May to June 2021. A structured self-administered questionnaire was used to collect the data from the HCWs. The information collected was entered to EpiData version 3.1 and exported to SPSS version 21 software for further analyses. Bivariable and multivariable binary logistic regression analyses were used to identify factors associated with the KA practice of the HCWs. Those variables with a <i>p</i> value <05 with a 95% confidence interval (CI) were considered as statistically significantly associated with the outcome variable.</p><p><strong>Result: </strong>Among the participating HCWs, 208 (64%; 95% CI: (58.8%, 69.2%)) of them had good practices of prevention and control measures of COVID-19 with the mean (±SD) practice score was 7.63 ± 2.45. Multivariable binary logistic regression revealed that being a health center worker (AOR = 0.34, 95% CI: (0.19, 0.60)), being trained (AOR = 0.41, 95% CI: (0.21, 0 .82)), and having sufficient knowledge (AOR = 2.73, 95% CI: (1.35, 5.53)) were significantly associated with good preventive practice.</p><p><strong>Conclusion: </strong>The overall magnitude of practice of prevention and control measures of COVID-19 was not sufficient. Therefore, strategies for enhancing the capacity of healthcare workers to exercise practices of prevention and control measures of COVID-19 are needed.</p>","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":" ","pages":"1973502"},"PeriodicalIF":1.9,"publicationDate":"2022-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9256462/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40597962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
SARS-CoV-2 Genome-Based Severity Predictions Correspond to Lower qPCR Values and Higher Viral Load. 基于严重急性呼吸系统综合征冠状病毒2型基因组的严重性预测与较低的qPCR值和较高的病毒载量相对应
IF 1.1
Global Health Epidemiology and Genomics Pub Date : 2022-05-31 eCollection Date: 2022-01-01 DOI: 10.1155/2022/6499217
Martin Skarzynski, Erin M McAuley, Ezekiel J Maier, Anthony C Fries, Jameson D Voss, Richard R Chapleau
{"title":"SARS-CoV-2 Genome-Based Severity Predictions Correspond to Lower qPCR Values and Higher Viral Load.","authors":"Martin Skarzynski, Erin M McAuley, Ezekiel J Maier, Anthony C Fries, Jameson D Voss, Richard R Chapleau","doi":"10.1155/2022/6499217","DOIUrl":"10.1155/2022/6499217","url":null,"abstract":"<p><p>The 2019 coronavirus disease (COVID-19) pandemic has demonstrated the importance of predicting, identifying, and tracking mutations throughout a pandemic event. As the COVID-19 global pandemic surpassed one year, several variants had emerged resulting in increased severity and transmissibility. Here, we used PCR as a surrogate for viral load and consequent severity to evaluate the real-world capabilities of a genome-based clinical severity predictive algorithm. Using a previously published algorithm, we compared the viral genome-based severity predictions to clinically derived PCR-based viral load of 716 viral genomes. For those samples predicted to be \"severe\" (probability of severe illness >0.5), we observed an average cycle threshold (Ct) of 18.3, whereas those in in the \"mild\" category (severity probability <0.5) had an average Ct of 20.4 (<i>P</i>=0.0017). We also found a nontrivial correlation between predicted severity probability and cycle threshold (<i>r</i> = -0.199). Finally, when divided into severity probability quartiles, the group most likely to experience severe illness (≥75% probability) had a Ct of 16.6 (<i>n</i> = 10), whereas the group least likely to experience severe illness (<25% probability) had a Ct of 21.4 (<i>n</i> = 350) (<i>P</i>=0.0045). Taken together, our results suggest that the severity predicted by a genome-based algorithm can be related to clinical diagnostic tests and that relative severity may be inferred from diagnostic values.</p>","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":"2022 1","pages":"6499217"},"PeriodicalIF":1.1,"publicationDate":"2022-05-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9173902/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42462486","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evolutionary Traits and Genomic Surveillance of SARS-CoV-2 in South America. 南美SARS-CoV-2的进化特征和基因组监测
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2022-05-18 eCollection Date: 2022-01-01 DOI: 10.1155/2022/8551576
Pablo A Ortiz-Pineda, Carlos H Sierra-Torres
{"title":"Evolutionary Traits and Genomic Surveillance of SARS-CoV-2 in South America.","authors":"Pablo A Ortiz-Pineda,&nbsp;Carlos H Sierra-Torres","doi":"10.1155/2022/8551576","DOIUrl":"10.1155/2022/8551576","url":null,"abstract":"<p><p>Since the zoonotic event from which SARS-CoV-2 started infecting humans late in 2019, the virus has caused more than 5 million deaths and has infected over 500 million people around the world. The pandemic has had a severe impact on social and economic activities, with greater repercussions in low-income countries. South America, with almost 5% of the world's population, has reckoned with almost a fifth of the total people infected and more than 26% (>1/4) of the deceased. Fortunately, the full genome structure and sequence of SARS-CoV-2 have been rapidly obtained and studied thanks to all the scientific efforts and data sharing around the world. Such molecular analysis of SARS-CoV-2 dynamics showed that rates of mutation, similar to other members of the <i>Coronaviridae</i> family, along with natural selection forces, could result in the emergence of new variants; few of them might be of high consequence. However, this is a serious threat to controlling the pandemic and, of course, enduring the process of returning to normalization with the implicit monetary cost of such a contingency. The lack of updated knowledge in South America justifies the need to develop a structured genomic surveillance program of current and emerging SARS-CoV-2 variants. The modeling of the molecular events and microevolution of the virus will contribute to making better decisions on public health management of the pandemic and developing accurate treatments and more efficient vaccines.</p>","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":"2022 1","pages":"8551576"},"PeriodicalIF":1.9,"publicationDate":"2022-05-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9132712/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42016547","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Modelling the Effect of the Interaction between Vaccination and Nonpharmaceutical Measures on COVID-19 Incidence. 模拟疫苗接种与非药物措施之间的相互作用对 COVID-19 发病率的影响。
IF 1.1
Global Health Epidemiology and Genomics Pub Date : 2022-03-31 eCollection Date: 2022-01-01 DOI: 10.1155/2022/9244953
Atsegine Canga, Gorka Bidegain
{"title":"Modelling the Effect of the Interaction between Vaccination and Nonpharmaceutical Measures on COVID-19 Incidence.","authors":"Atsegine Canga, Gorka Bidegain","doi":"10.1155/2022/9244953","DOIUrl":"https://doi.org/10.1155/2022/9244953","url":null,"abstract":"<p><p>Since December 2019, the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread rapidly from Wuhan (China) across the globe, affecting more than 200 countries by mid-2021, with over 190 M reported cases and around 4 M fatalities. During the first year of the pandemic, affected countries implemented a variety of nonpharmaceutical interventions to control virus transmission. In December 2020, countries started administering several authorised vaccines under a limited supply scenario. In this context, the aim of this study was to develop a SEIR-type continuous-time deterministic disease model, to determine the impact of interaction between different vaccination scenarios and levels of protection measures on disease incidence. For this, the model incorporates (i) a protection measure including low (self-protection), medium (mobility limitation), high (closure of indoor facilities), and very high (lockdown) protection levels, (ii) quarantine for confirmed cases, and (iii) vaccination rate and efficacy of four types of vaccines (Pfizer, Moderna, Astra Zeneca, and Janssen). The model was verified and evaluated using the response timeline and vaccination strategies and rates in the Basque Country (N. Spain). Once the model performance was validated, different initial phase (when 30% of the population is vaccinated) vaccination scenarios were simulated, including (i) a realistic vaccine limited supply scenario and (ii) four potential full vaccine supply scenarios where a unique vaccine type is administered. Significant differences in disease prevalence and cumulative mortality were found between vaccination scenarios for low and medium-level protection measures. For high-level protection measures, any vaccine scenario is effective at limiting the virus transmission and disease mortality. The results obtained here may vary in further studies since there may be some unpredictable factors/covariates. With this in mind, the model here could be easily applied to other regions or countries, modifying the strategies implemented and initial conditions.</p>","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":"2022 ","pages":"9244953"},"PeriodicalIF":1.1,"publicationDate":"2022-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8968356/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142047326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of Evidence-Based COVID-19 Management Guidelines for Local Context: The Methodological Challenges. 基于当地情况制定基于证据的COVID-19管理指南:方法挑战。
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2022-01-01 DOI: 10.1155/2022/4240378
Sarah Nadeem, Salima Saleem Aamdani, Bushra Ayub, Nashia Ali Rizvi, Fatima Safi Arslan, Russell Seth Martins, Maria Khan, Syed Faisal Mahmood
{"title":"Development of Evidence-Based COVID-19 Management Guidelines for Local Context: The Methodological Challenges.","authors":"Sarah Nadeem,&nbsp;Salima Saleem Aamdani,&nbsp;Bushra Ayub,&nbsp;Nashia Ali Rizvi,&nbsp;Fatima Safi Arslan,&nbsp;Russell Seth Martins,&nbsp;Maria Khan,&nbsp;Syed Faisal Mahmood","doi":"10.1155/2022/4240378","DOIUrl":"https://doi.org/10.1155/2022/4240378","url":null,"abstract":"&lt;p&gt;&lt;strong&gt;Background: &lt;/strong&gt;The coronavirus disease 2019 (COVID-19) pandemic has presented as a therapeutic challenge for clinicians worldwide due to its rapid spread along with evolving evidence and understanding of the disease. Internationally, recommendations to guide the management of COVID-19 have been created and updated continuously by the WHO and CDC, which have been locally adapted by different countries. Similarly, Pakistan's National Command Operation Center (NCOC), in its national COVID-19 management strategy, generated guidelines for national implementation. Keeping the guidelines updated has proved challenging globally and locally. Here, we present a summary of the process to assess the evidence, including a time-restricted systematic review based on NCOC Clinical Management Guidelines for COVID-19 Infections v4 published on 11&lt;sup&gt;th&lt;/sup&gt; December 2020 version, correlating it with current recommendations and with input one of the guidelines authors, particularly noting the methodological challenges.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Methods: &lt;/strong&gt;We conducted a systematic review synthesizing global research on treatment options for COVID-19 hospitalized patients, limiting it to pharmacological interventions for hospitalized COVID-19 patients included in Pakistan's NCOC's national guidelines v4 published on 11&lt;sup&gt;th&lt;/sup&gt; December 2020. Each treatment recommendation's strength and quality of evidence was assessed based on the grading of recommendations assessment, development, and evaluation (GRADE) methodology. These were then compared to the most current living WHO COVID-19 pharmacological treatment guidelines v7.1. One of the authors of the NCOC guidelines reviewed and commented on the findings as well.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Results: &lt;/strong&gt;We note that the data from our systematic review strongly supports corticosteroids use in treating severe and critically ill COVID-19 hospitalized patients correlating with WHO v7.1 guidelines 24 September 2021. However, evidence from our review and WHO v7.1 for the use of tocilizumab had some conflicting evidence, with data from our review until December 2020 supporting only a weak recommendation for its use, compared to the strong recommendation by the WHO for the use of tocilizumab in patients with severe or critical COVID-19 infection. Regarding the use of antibiotics and ivermectin use in treating COVID-19 hospitalized patients, data from our review and WHO v 7.1 recommend against their use.&lt;/p&gt;&lt;p&gt;&lt;strong&gt;Conclusion: &lt;/strong&gt;Research data about the efficacy and safety of pharmacological interventions to treat hospitalized patients with COVID-19 are rapidly evolving, and based on it, the evidence for or against recommendations changes accordingly. Our study illustrates the challenges of keeping up with the evidence; the recommendations were based on studies up till December 2021, and we have compared our recommendations with the WHO v7.1, which showed some significant changes in the use of pharmacologica","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":"2022 ","pages":"4240378"},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9020141/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9173438","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Considerations of Autonomy in Guiding Decisions around the Feedback of Individual Genetic Research Results from Genomics Research: Expectations of and Preferences from Researchers in Botswana. 自主性的考虑在指导决策周围的个人遗传研究结果的反馈基因组学研究:期望和偏好的研究人员在博茨瓦纳。
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2022-01-01 DOI: 10.1155/2022/3245206
Mary Kasule, Mogomotsi Matshaba, Erisa Mwaka, Ambroise Wonkam, Jantina de Vries
{"title":"Considerations of Autonomy in Guiding Decisions around the Feedback of Individual Genetic Research Results from Genomics Research: Expectations of and Preferences from Researchers in Botswana.","authors":"Mary Kasule,&nbsp;Mogomotsi Matshaba,&nbsp;Erisa Mwaka,&nbsp;Ambroise Wonkam,&nbsp;Jantina de Vries","doi":"10.1155/2022/3245206","DOIUrl":"https://doi.org/10.1155/2022/3245206","url":null,"abstract":"<p><strong>Background: </strong>The Human Health and Heredity (H3Africa) Consortium continues to generate large amounts of genomic data leading to new insights into health and disease among African populations. This has however generated debate among stakeholders involved in developing, implementing, and applying ethical standards and policies for the return of individual genetic research results. The key questions are about when results must, should, may, or must not be returned and by whom. This study aimed to explore the views on the feedback of individual pertinent and incidental genetic research results of researchers, ethics committee members, and policymakers in Botswana.</p><p><strong>Methods: </strong>In-depth interviews were conducted with 16 key stakeholders from academic, research institutions, and regulatory bodies in Botswana. An analysis of the coded data was done through an iterative process of analytic induction to document and interpret themes and patterns.</p><p><strong>Results: </strong>Overall, the study indicated that researchers have at least a partial obligation to return individual genetic research results to research participants. Respondents placed emphasis on the ethical principle of autonomy. They felt that it was inappropriate for researchers to make decisions about the return of results on participants' behalf except in situations of avoiding participant self-harm or harm to society.</p><p><strong>Conclusion: </strong>Findings helped to highlight the importance of considering participants' autonomy in the development of sustainable and credible guidelines for feedback of findings from genomics research in Botswana, which can be explained during community engagement and consent processes. Such guidelines would ultimately be used to develop policies, guide African genomics research, and promote participant autonomy, transparency, and possibly participant trust in research.</p>","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":"2022 ","pages":"3245206"},"PeriodicalIF":1.9,"publicationDate":"2022-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8989579/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9540759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
The Main Patterns in the Trend Change of Stomach Cancer Incidence amongst Selected African Countries. 部分非洲国家胃癌发病率趋势变化的主要模式
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2021-12-23 eCollection Date: 2021-01-01 DOI: 10.1155/2021/5065707
Fahimeh Shokouhi, Aida Amiripour, Hadi Raeisi Shahraki
{"title":"The Main Patterns in the Trend Change of Stomach Cancer Incidence amongst Selected African Countries.","authors":"Fahimeh Shokouhi,&nbsp;Aida Amiripour,&nbsp;Hadi Raeisi Shahraki","doi":"10.1155/2021/5065707","DOIUrl":"https://doi.org/10.1155/2021/5065707","url":null,"abstract":"<p><strong>Aim: </strong>The current study aimed to investigate the trend changes of stomach cancer incidence amongst African countries and identify the main patterns.</p><p><strong>Methods: </strong>The annual reports of stomach cancer incidence rate (per 100,000 people) for males and females in 53 African countries from 1990 to 2016 were maintained from the World Health Organization archive. The growth mixture model was used for fitting the models in Mplus 7.4. The estimated linear trend in each pattern was characterized by intercept (the rate at 1990) and slope (the observed biennial trend changes), and finally, each country was grouped into a cluster with the most similar pattern.</p><p><strong>Results: </strong>Three main patterns for males and two main patterns for females were determined. For males, the first cluster, containing Cape Verde, Central African Republic, and Mauritius, showed a sharp fall, while countries in the second pattern including Algeria, Côte d'Ivoire, Egypt, Gambia, Libya, Malawi, Morocco, Namibia, Nigeria, and Tunisia were categorized in a pattern with a slight decrease, and other 43 countries were in the third pattern with a moderate falling trend. For females, 19 countries including Angola, Botswana, Burundi, Cape Verde, Central African Republic, Congo Republic, Equatorial Guinea, Ethiopia, Gabon, Kenya, Mali, Mauritius, Rwanda, Sao Tome and Principe, Sudan, Swaziland, Uganda, Zambia, and Zimbabwe were categorized in the moderate-to-high falling pattern, but the other 34 countries had a gentle downward pattern.</p><p><strong>Conclusion: </strong>Although most of the observed trends of stomach cancer were falling, only a few countries had experienced a favorable decreasing trend (three countries in male incidence and nineteen countries in female incidence). Therefore, taking effective actions to accelerate the observed falling trends seems necessary.</p>","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":"2021 ","pages":"5065707"},"PeriodicalIF":1.9,"publicationDate":"2021-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8718290/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39816942","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Modelling the Effect of the Interaction between Vaccination and Nonpharmaceutical Measures on COVID-19 Incidence 疫苗接种与非药物措施相互作用对新冠肺炎发病率影响的模型
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2021-11-29 DOI: 10.1101/2021.11.29.21266986
Atsegine Canga, G. Bidegain
{"title":"Modelling the Effect of the Interaction between Vaccination and Nonpharmaceutical Measures on COVID-19 Incidence","authors":"Atsegine Canga, G. Bidegain","doi":"10.1101/2021.11.29.21266986","DOIUrl":"https://doi.org/10.1101/2021.11.29.21266986","url":null,"abstract":"Since December 2019, the novel severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has spread rapidly from Wuhan (China) across the globe, affecting more than 200 countries by mid-2021, with over 190 M reported cases and around 4 M fatalities. During the first year of the pandemic, affected countries implemented a variety of non-pharmaceutical interventions to control virus transmission. In December 2020, countries started administering several authorised vaccines under a limited supply scenario. In this context, a SEIR-type continuous-time deterministic disease model was developed to explore the effect of vaccination in terms of vaccination rate and efficacy, together with varying non-pharmaceutical protection measures, on disease incidence in the initial phase of vaccination. For this, the model incorporates (i) a protection measure including low (self-protection), medium (mobility limitation), high (closure of indoor facilities) and very high (lockdown) protection levels, (ii) quarantine for confirmed cases, and (iii) vaccination rate and efficacy of four type of vaccines (Pfizer, Moderna, Astra Zeneca or Janssen). The model was veri[fi]ed and evaluated using the response timeline and vaccination strategies and rates in the Basque Country (N. Spain). Once the model performance was validated, different initial phase (when 30% of the population is vaccinated) vaccination scenarios were simulated, including (i) a realistic vaccine limited supply scenario, and (ii) four potential full vaccine supply scenarios where a unique vaccine type is administered. The Pfizer scenario resulted in the lowest prevalence of infection and cumulative mortality, particularly for low- and medium-level protection rates. However, regardless of the administered vaccine, a high-level protection scenario is the most effective to control the virus transmission and disease mortality in the studied initial phase of vaccination. The model here, which is based on this example, could be easily applied to other regions or countries, modifying the strategies implemented and initial conditions.","PeriodicalId":44052,"journal":{"name":"Global Health Epidemiology and Genomics","volume":" ","pages":""},"PeriodicalIF":1.9,"publicationDate":"2021-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49413689","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
An Assessment of the Economic Feasibility of Selected Surgeries in the Obstetrics and Gynaecology Department under Community-Based Health Insurance (CBHI) in a Tertiary Care Hospital in South India. 印度南部一家三级医院妇产科部分手术在社区医疗保险(CBHI)下的经济可行性评估。
IF 1.9
Global Health Epidemiology and Genomics Pub Date : 2021-09-25 eCollection Date: 2021-01-01 DOI: 10.1155/2021/1158533
Jatoveda Haldar, Rajesh Kamath, Kramer Stallone D'lima, Jossil Nazareth
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