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Trends in Plant Science最新文献

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Synteny detection, visualization, and its trending applications. 同步检测，可视化及其趋势应用。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-06-15 DOI: 10.1016/j.tplants.2026.05.010
Xi Zhang, David R Smith
{"title":"Synteny detection, visualization, and its trending applications.","authors":"Xi Zhang, David R Smith","doi":"10.1016/j.tplants.2026.05.010","DOIUrl":"10.1016/j.tplants.2026.05.010","url":null,"abstract":"<p><p>Synteny detection analyses facilitate comparative genomics, especially when investigating gene duplications, genomic rearrangements, and ancient whole-genome duplication events. In recent years, major advancements have been seen in synteny detection and visualization. In this forum article, we explore the trending role that these tools play in gene-duplication detection, pangenome graph construction, and deep-learning-based cross-species transcript prediction.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1262-1265"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148259076","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plant eccDNA as drivers of genome plasticity and stress adaptation. 植物基因组可塑性和逆境适应的驱动因素。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-05-11 DOI: 10.1016/j.tplants.2026.04.014
Hanfang Ni, Damar López-Arredondo, Mian Gu, Lenin Yong-Villalobos, Guohua Xu, Luis R Herrera-Estrella
{"title":"Plant eccDNA as drivers of genome plasticity and stress adaptation.","authors":"Hanfang Ni, Damar López-Arredondo, Mian Gu, Lenin Yong-Villalobos, Guohua Xu, Luis R Herrera-Estrella","doi":"10.1016/j.tplants.2026.04.014","DOIUrl":"10.1016/j.tplants.2026.04.014","url":null,"abstract":"<p><p>Extrachromosomal circular DNA (eccDNA) is now recognized as a widespread and functionally significant feature of plant genomes. Evidence indicates that eccDNAs contribute to genome plasticity and gene regulation, particularly during abiotic stress. This review synthesizes current knowledge on the composition, dynamics, and functions of plant eccDNAs, including those enriched in transposable elements, protein-coding genes, and repetitive sequences, and their emerging roles in stress tolerance. We evaluate leading models of eccDNA biogenesis, emphasizing mechanisms tied to DNA damage repair and recombination, informed by plant and nonplant systems. We also highlight recent discoveries on eccDNA accumulation, transmission, and regulatory potential, underscoring the need to integrate eccDNA biology into mainstream plant genomics and stress-adaptation research.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1346-1360"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147875772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Single-cell laser ablation uncovers the blueprint of plant development. 单细胞激光消融揭示了植物发育的蓝图。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-05-16 DOI: 10.1016/j.tplants.2026.04.029
Muhammad S Anjam, Luciano Martín Di Fino, Xuemin Ma, Peter Marhavý
{"title":"Single-cell laser ablation uncovers the blueprint of plant development.","authors":"Muhammad S Anjam, Luciano Martín Di Fino, Xuemin Ma, Peter Marhavý","doi":"10.1016/j.tplants.2026.04.029","DOIUrl":"10.1016/j.tplants.2026.04.029","url":null,"abstract":"<p><p>Understanding how positional information within plant tissues shapes developmental programs in real time has long remained a challenge due to technical limitations in precisely accessing and manipulating defined cellular domains within complex tissues. Recent advances in single-cell laser ablation, particularly when combined with confocal microscopy, now allow precise spatiotemporal perturbation of selected cells. This technology has enabled researchers to dissect cellular functions, communication dynamics, and mechanical responses with unprecedented accuracy. Here, we review how laser ablation has emerged as a transformative approach in plant biology, from unraveling the signaling networks governing meristem maintenance and root patterning to modeling wound responses and immune activation.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1334-1345"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147960275","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Water lilies illuminate angiosperm evolution and inspire crop improvement. 睡莲揭示了被子植物的进化并启发了作物改良。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-06-13 DOI: 10.1016/j.tplants.2026.05.013
Jiahao Zhang, Yufan Liang, Fei Chen
{"title":"Water lilies illuminate angiosperm evolution and inspire crop improvement.","authors":"Jiahao Zhang, Yufan Liang, Fei Chen","doi":"10.1016/j.tplants.2026.05.013","DOIUrl":"10.1016/j.tplants.2026.05.013","url":null,"abstract":"<p><p>Water lilies provide a unique blueprint for early angiosperm evolution and aquatic adaptation. Genomic insights into aquatic resilience and ancestral flower models have facilitated modern crop engineering. By leveraging these ancient genetic networks, researchers can develop blue aromatic flowers, implement stolon-mediated expansion in cereal crops, and enhance the flood tolerance of terrestrial crops, thereby building a resilient agricultural future.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1266-1268"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148253465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Women in plant science around the world. 全世界从事植物科学的女性。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 DOI: 10.1016/j.tplants.2026.09.001
Hongtao L H T Liu, Joana Falcao Salles, Cecilia Sarmiento
{"title":"Women in plant science around the world.","authors":"Hongtao L H T Liu, Joana Falcao Salles, Cecilia Sarmiento","doi":"10.1016/j.tplants.2026.09.001","DOIUrl":"https://doi.org/10.1016/j.tplants.2026.09.001","url":null,"abstract":"","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":""},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149115042","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Small peptides guard the gate of plant immunity. 小肽守卫着植物免疫的大门。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-06-23 DOI: 10.1016/j.tplants.2026.05.016
Nicole A Freeman, Ujjal J Phukan, Yiqing Wang, Sydney A Greer, M Shahid Mukhtar
{"title":"Small peptides guard the gate of plant immunity.","authors":"Nicole A Freeman, Ujjal J Phukan, Yiqing Wang, Sydney A Greer, M Shahid Mukhtar","doi":"10.1016/j.tplants.2026.05.016","DOIUrl":"10.1016/j.tplants.2026.05.016","url":null,"abstract":"<p><p>An upstream open reading frame-encoded peptide mediates rapid systemic stomatal immunity by moving from infected leaves to distal guard cells, where a receptor complex triggers Ca<sup>2+</sup>-dependent vacuolar remodeling and stomatal closure (Liu et al.). In this article, we discuss this concept, its limitations, and future implications for immune network integration.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1258-1261"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148309595","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multitasking mediators: revealing the secret jobs of plant metacaspases. 多任务介质：揭示植物元胞酶的秘密工作。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-06-01 DOI: 10.1016/j.tplants.2026.04.030
Eric Lam, Nuria S Coll, Qun Liu
{"title":"Multitasking mediators: revealing the secret jobs of plant metacaspases.","authors":"Eric Lam, Nuria S Coll, Qun Liu","doi":"10.1016/j.tplants.2026.04.030","DOIUrl":"10.1016/j.tplants.2026.04.030","url":null,"abstract":"<p><p>As sessile organisms, plants must constantly survey their surroundings and make appropriate responses in their metabolism or development. Numerous receptors and kinases, as well as phytocytokines that play key roles in signal transduction for a multitude of cues, have been revealed in the past 2 decades. However, the mechanisms coordinating these responses remain poorly understood. Recently, the conserved plant metacaspase family emerged as a versatile switch that plays multiple roles, from early signal perception to downstream propagation, by proteolysis of propeptides or other signaling proteins to mediate their conversion to activated forms. In addition, evidence for proteolysis-independent functions of plant metacaspases has also emerged. In this feature review, we summarize advances in plant metacaspase functions and consider approaches to unravel their complex impacts.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1314-1333"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148144860","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Women in plant science around the world. 全世界从事植物科学的女性。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-07-27 DOI: 10.1016/j.tplants.2026.07.009
Ramni H Jamnadass, Heather E McFarlane, Stefania Vitale
{"title":"Women in plant science around the world.","authors":"Ramni H Jamnadass, Heather E McFarlane, Stefania Vitale","doi":"10.1016/j.tplants.2026.07.009","DOIUrl":"10.1016/j.tplants.2026.07.009","url":null,"abstract":"","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1243-1247"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148607890","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CYBDOMs as emerging multifunctional stress hubs in plants. CYBDOMs是植物中新兴的多功能应激中枢。
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-05-11 DOI: 10.1016/j.tplants.2026.04.025
Rodolfo A Maniero, Ricardo F H Giehl
{"title":"CYBDOMs as emerging multifunctional stress hubs in plants.","authors":"Rodolfo A Maniero, Ricardo F H Giehl","doi":"10.1016/j.tplants.2026.04.025","DOIUrl":"10.1016/j.tplants.2026.04.025","url":null,"abstract":"<p><p>CYBDOMs consist of a dopamine β-monooxygenase N-terminal (DOMON) domain and a membrane-bound cytochrome b561 domain. Two recent studies (Chen et al., Ren et al.) demonstrate that, in addition to the previously shown ferric reduction, these proteins can mediate ascorbate regeneration and calcium transport, pointing to multiple functions in plants.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1254-1257"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147875828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
What is a plant chemotype, anyway? 到底什么是植物化学型？
IF 21.2 1区 生物学
Trends in Plant Science Pub Date : 2026-10-01 Epub Date: 2026-06-04 DOI: 10.1016/j.tplants.2026.05.003
Caroline Müller, Thomas Dussarrat, Nicole M van Dam
{"title":"What is a plant chemotype, anyway?","authors":"Caroline Müller, Thomas Dussarrat, Nicole M van Dam","doi":"10.1016/j.tplants.2026.05.003","DOIUrl":"10.1016/j.tplants.2026.05.003","url":null,"abstract":"<p><p>Many plant species exhibit chemical polymorphisms in the composition of specialized metabolites belonging to certain chemical families. This has led to the classification of chemotypes, that is, groups of plants that can be distinguished by their chemical profiles of metabolites within a single chemical family. We present existing definitions and approaches for classifying chemotypes and describe the factors that determine them. We argue that it should always be stated explicitly on which organ the chemotype specification is based on, because chemical profiles can differ among organs. Moreover, the chemical family must be stated explicitly, as plants may be grouped differently when other metabolites are taken into account. We argue that gaining more knowledge about chemotypes is highly relevant to both basic and applied science.</p>","PeriodicalId":23264,"journal":{"name":"Trends in Plant Science","volume":" ","pages":"1292-1302"},"PeriodicalIF":21.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148158276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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