Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.adn7540
Qing Wang, Xiaoshu Xu, Siyu Chen, Rui Lu, Liang Li, Chien-Hui Lo, Zhiquan Liu, Ke Ning, Tingting Li, Tia J. Kowal, Biao Wang, Mary E. Hartnett, Sui Wang, Lei S. Qi, Yang Sun
{"title":"dCasMINI-mediated therapy rescues photoreceptors degeneration in a mouse model of retinitis pigmentosa","authors":"Qing Wang, Xiaoshu Xu, Siyu Chen, Rui Lu, Liang Li, Chien-Hui Lo, Zhiquan Liu, Ke Ning, Tingting Li, Tia J. Kowal, Biao Wang, Mary E. Hartnett, Sui Wang, Lei S. Qi, Yang Sun","doi":"10.1126/sciadv.adn7540","DOIUrl":"https://doi.org/10.1126/sciadv.adn7540","url":null,"abstract":"Retinitis pigmentosa (RP) is characterized by degeneration of rod and cone photoreceptors that progresses to irreversible blindness. Now, there are no mutation-agnostic approaches to treat RP. Here, we utilized a single adeno-associated virus (AAV)–based CRISPR activation system to activate phosphodiesterase 6B (Pde6b) to mitigate the severe degeneration in <jats:italic>Pde6a</jats:italic> <jats:sup>nmf363</jats:sup> mice. We demonstrate that transcriptional activation of <jats:italic>Pde6b</jats:italic> can rescue the loss of <jats:italic>Pde6a</jats:italic> , with preservation of retinal structure, restoration of electroretinography responses, and improvement of visual function as assessed by optokinetic response and looming-induced escape behaviors. These findings demonstrate the therapeutic potential of a dCasMINI-mediated activation strategy that provides a mutation-independent treatment for retinal degeneration. This study offers a promising therapeutic approach for RP and potentially other forms of genetic diseases.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"30 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Hydroalkylation of unactivated olefins with C(sp 3 )─H compounds enabled by NiH-catalyzed radical relay","authors":"Jiang-Ling Shi, Youcheng Wang, Yufeng Han, Jinqi Chen, Xiaolan Pu, Ying Xia","doi":"10.1126/sciadv.ads6885","DOIUrl":"https://doi.org/10.1126/sciadv.ads6885","url":null,"abstract":"The hydroalkylation reaction of olefins with alkanes is a highly desirable synthetic transformation toward the construction of C(sp <jats:sup>3</jats:sup> )─C(sp <jats:sup>3</jats:sup> ) bonds. However, such transformation has proven to be challenging for unactivated olefins, particularly when the substrates lack directing groups or acidic C(sp <jats:sup>3</jats:sup> )─H bonds. Here, we address this challenge by merging NiH-catalyzed radical relay strategy with a HAT (hydrogen atom transfer) process. In this catalytic system, a nucleophilic alkyl radical is generated from a C(sp <jats:sup>3</jats:sup> )─H compound in the presence of a HAT promotor, which couples with an alkyl metallic intermediate generated from the olefin substrate with a NiH catalyst to form the C(sp <jats:sup>3</jats:sup> )─C(sp <jats:sup>3</jats:sup> ) bond. Starting from easily available materials, the reaction not only demonstrates wide functional group compatibility but also provides hydroalkylation products with regiodivergence and excellent enantioselectivity through effective catalyst control under mild conditions.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"82 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.adq6290
Ilana Nisky, Tamar R. Makin
{"title":"A neurocognitive pathway for engineering artificial touch","authors":"Ilana Nisky, Tamar R. Makin","doi":"10.1126/sciadv.adq6290","DOIUrl":"https://doi.org/10.1126/sciadv.adq6290","url":null,"abstract":"Artificial haptics has the potential to revolutionize the way we integrate physical and virtual technologies in our daily lives, with implications for teleoperation, motor skill acquisition, rehabilitation, gaming, interpersonal communication, and beyond. Here, we delve into the intricate interplay between the somatosensory system and engineered haptic inputs for perception and action. We critically examine the sensory feedback’s fidelity and the cognitive demands of interfacing with these systems. We examine how artificial touch interfaces could be redesigned to better align with human sensory, motor, and cognitive systems, emphasizing the dynamic and context-dependent nature of sensory integration. We consider the various learning processes involved in adapting to artificial haptics, highlighting the need for interfaces that support both explicit and implicit learning mechanisms. We emphasize the need for technologies that are not only physiologically biomimetic but also behaviorally and cognitively congruent with the user, affording a range of alternative solutions to users’ needs.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"86 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841838","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.adt0022
Sundharraman Subramanian, Silje M. Bergland Drarvik, Kendal R. Tinney, Sarah M. Doore, Kristin N. Parent
{"title":"Moo19 and B2: Structures of Schitoviridae podophages with T = 9 geometry and tailspikes with esterase activity","authors":"Sundharraman Subramanian, Silje M. Bergland Drarvik, Kendal R. Tinney, Sarah M. Doore, Kristin N. Parent","doi":"10.1126/sciadv.adt0022","DOIUrl":"https://doi.org/10.1126/sciadv.adt0022","url":null,"abstract":"Podophages are, by far, the least well studied of all the bacteriophages. Despite being classified together due to their short, noncontractile tails, there is a huge amount of diversity among members of this group. Of the podophages, the N4-like <jats:italic>Schitoviridae</jats:italic> family is the least well studied structurally and is quite divergent from well-characterized podophages such as T7 and P22. In this work, we isolate and fully characterize two members of the <jats:italic>Schitoviridae</jats:italic> family by cryo–electron microscopy, genetics, and biochemistry. We describe the capsid features of Moo19 and B2, including a decoration protein. In addition, we have fully modeled the tail machinery for both phages and identify proteins with esterase activity. Genetic knockouts of the host reveal factors specific for host attachment including key modifications to the O-antigen on the lipopolysaccharide. Moo19 and B2 are both <jats:italic>Schitoviridae</jats:italic> members, yet some distinct differences in the genome and structure place them into distinct clades.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"55 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.ado5478
Lauren K. O’Connor, Rhodri M. Jerrett, Gregory D. Price, Tyler R. Lyson, Sabine K. Lengger, Francien Peterse, Bart E. van Dongen
{"title":"Terrestrial evidence for volcanogenic sulfate-driven cooling event ~30 kyr before the Cretaceous–Paleogene mass extinction","authors":"Lauren K. O’Connor, Rhodri M. Jerrett, Gregory D. Price, Tyler R. Lyson, Sabine K. Lengger, Francien Peterse, Bart E. van Dongen","doi":"10.1126/sciadv.ado5478","DOIUrl":"https://doi.org/10.1126/sciadv.ado5478","url":null,"abstract":"Alongside the Chicxulub meteorite impact, Deccan volcanism is considered a primary trigger for the Cretaceous–Paleogene (K–Pg) mass extinction. Models suggest that volcanic outgassing of carbon and sulfur—potent environmental stressors—drove global temperature change, but the relative timing, duration, and magnitude of such change remains uncertain. Here, we use the organic paleothermometer MBT′ <jats:sub>5me</jats:sub> and the carbon-isotope composition of two K–Pg-spanning lignites from the western Unites States, to test models of volcanogenic air temperature change in the ~100 kyr before the mass extinction. Our records show long-term warming of ~3°C, probably driven by Deccan CO <jats:sub>2</jats:sub> emissions, and reveal a transient (<10 kyr) ~5°C cooling event, coinciding with the peak of the Poladpur “pulse” of Deccan eruption ~30 kyr before the K–Pg boundary. This cooling was likely caused by the aerosolization of volcanogenic sulfur. Temperatures returned to pre-event values before the mass extinction, suggesting that, from the terrestrial perspective, volcanogenic climate change was not the primary cause of K–Pg extinction.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"30 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841830","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.adq2754
Sourena Soheili-Nezhad, Dick Schijven, Rogier B. Mars, Simon E. Fisher, Clyde Francks
{"title":"Distinct impact modes of polygenic disposition to dyslexia in the adult brain","authors":"Sourena Soheili-Nezhad, Dick Schijven, Rogier B. Mars, Simon E. Fisher, Clyde Francks","doi":"10.1126/sciadv.adq2754","DOIUrl":"https://doi.org/10.1126/sciadv.adq2754","url":null,"abstract":"Dyslexia is a common and partially heritable condition that affects reading ability. In a study of up to 35,231 adults, we explored the structural brain correlates of genetic disposition to dyslexia. Individual dyslexia-disposing genetic variants showed distinct patterns of association with brain structure. Independent component analysis revealed various brain networks that each had their own genomic profiles related to dyslexia susceptibility. Circuits involved in motor coordination, vision, and language were implicated. Polygenic scores for eight traits genetically correlated with dyslexia, including cognitive, behavioral, and reading-related psychometric measures, showed partial similarities to dyslexia in terms of brain-wide associations. Notably, microstructure of the internal capsule was consistently implicated across all of these genetic dispositions, while lower volume of the motor cortex was more specifically associated with dyslexia genetic disposition alone. These findings reveal genetic and neurobiological features that may contribute to dyslexia and its associations with other traits at the population level.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"1 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841833","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.ads2140
Shaolou Wei, Yan Ma, Dierk Raabe
{"title":"Reactive vapor-phase dealloying-alloying turns oxides into sustainable bulk nano-structured porous alloys","authors":"Shaolou Wei, Yan Ma, Dierk Raabe","doi":"10.1126/sciadv.ads2140","DOIUrl":"https://doi.org/10.1126/sciadv.ads2140","url":null,"abstract":"For millennia, alloying has been the greatest gift from metallurgy to humankind: a process of mixing elements, propelling our society from the Bronze Age to the Space Age. Dealloying, by contrast, acts like a penalty: a corrosive counteracting process of selectively removing elements from alloys or compounds, degrading their structural integrity over time. We show that when these two opposite metallurgical processes meet in a reactive vapor environment, profound sustainable alloy design opportunities become accessible, enabling bulk nanostructured porous alloys directly from oxides, with zero carbon footprint. We introduce thermodynamically well-grounded treasure maps that turn the intuitive opposition between alloying and dealloying into harmony, facilitating a quantitative approach to navigate synthesis in such an immense design space. We demonstrate this alloy design paradigm by synthesizing nanostructured Fe-Ni-N porous martensitic alloys fully from oxides in a single solid-state process step and substantiating the critical kinetic processes responsible for the desired microstructure.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"10 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841863","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.adq4324
Rui Yan, Md Tauhidul Islam, Lei Xing
{"title":"Deep representation learning of protein-protein interaction networks for enhanced pattern discovery","authors":"Rui Yan, Md Tauhidul Islam, Lei Xing","doi":"10.1126/sciadv.adq4324","DOIUrl":"https://doi.org/10.1126/sciadv.adq4324","url":null,"abstract":"Protein-protein interaction (PPI) networks, where nodes represent proteins and edges depict myriad interactions among them, are fundamental to understanding the dynamics within biological systems. Despite their pivotal role in modern biology, reliably discerning patterns from these intertwined networks remains a substantial challenge. The essence of the challenge lies in holistically characterizing the relationships of each node with others in the network and effectively using this information for accurate pattern discovery. In this work, we introduce a self-supervised network embedding framework termed discriminative network embedding (DNE). Unlike conventional methods that primarily focus on direct or limited-order node proximity, DNE characterizes a node both locally and globally by harnessing the contrast between representations from neighboring and distant nodes. Our experimental results demonstrate DNE’s superior performance over existing techniques across various critical network analyses, including PPI inference and the identification of protein functional modules. DNE emerges as a robust strategy for node representation in PPI networks, offering promising avenues for diverse biomedical applications.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"145 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Science AdvancesPub Date : 2024-12-18DOI: 10.1126/sciadv.ads0260
Hao Yang, Haoyuan Zhang, Chengjun Kang, Chunqing Ji, Dongchen Shi, Dan Zhao
{"title":"Solvent-responsive covalent organic framework membranes for precise and tunable molecular sieving","authors":"Hao Yang, Haoyuan Zhang, Chengjun Kang, Chunqing Ji, Dongchen Shi, Dan Zhao","doi":"10.1126/sciadv.ads0260","DOIUrl":"https://doi.org/10.1126/sciadv.ads0260","url":null,"abstract":"Membrane-based nanofiltration has the potential to revolutionize the large-scale treatment of organic solvents in various applications. However, the widely used commercial membranes suffer from low permeability, narrow structural tunability, and limited chemical resistance. Here, we report a strategy for fabricating covalent organic framework (COF) membranes with solvent-responsive structural flexibility. The interlayer shifting of these COF membranes in polar organic solvents results in sub-nanopores with high selectivity. High rejection rates (>99%), high permeance (>15 kilogram meter <jats:sup>−2</jats:sup> hour <jats:sup>−1</jats:sup> bar <jats:sup>−1</jats:sup> ), and excellent organic solvent resistance of these smart COF membranes are achieved for a diverse array of nanofiltration applications.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"76 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841832","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Future spinal reflex is embedded in primary motor cortex output","authors":"Tatsuya Umeda, Osamu Yokoyama, Michiaki Suzuki, Miki Kaneshige, Tadashi Isa, Yukio Nishimura","doi":"10.1126/sciadv.adq4194","DOIUrl":"https://doi.org/10.1126/sciadv.adq4194","url":null,"abstract":"Mammals can execute intended limb movements despite the fact that spinal reflexes involuntarily modulate muscle activity. To generate appropriate muscle activity, the cortical descending motor output must coordinate with spinal reflexes, yet the underlying neural mechanism remains unclear. We simultaneously recorded activities in motor-related cortical areas, afferent neurons, and forelimb muscles of monkeys performing reaching movements. Motor-related cortical areas, predominantly primary motor cortex (M1), encode subsequent afferent activities attributed to forelimb movement. M1 also encodes a subcomponent of muscle activity evoked by these afferent activities, corresponding to spinal reflexes. Furthermore, selective disruption of the afferent pathway specifically reduced this subcomponent of muscle activity, suggesting that M1 output drives muscle activity not only through direct descending pathways but also through the “transafferent” pathway composed of descending plus subsequent spinal reflex pathways. Thus, M1 provides optimal motor output based on an internal forward model that prospectively computes future spinal reflexes.","PeriodicalId":21609,"journal":{"name":"Science Advances","volume":"79 1","pages":""},"PeriodicalIF":13.6,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142841860","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}