Mass Spectrometry Reviews最新文献

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Recent Advances (2023-2025) of Capillary Electrophoresis-Mass Spectrometry (CE-MS) for Top-Down Proteomics. 毛细管电泳-质谱(CE-MS)用于自上而下蛋白质组学的最新进展(2023-2025)。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-05-07 DOI: 10.1002/mas.70028
Guijie Zhu, David A Alvarez Rodriguez, Noah Gould, Alexander R Ivanov, Kevin Jooß, Liangliang Sun
{"title":"Recent Advances (2023-2025) of Capillary Electrophoresis-Mass Spectrometry (CE-MS) for Top-Down Proteomics.","authors":"Guijie Zhu, David A Alvarez Rodriguez, Noah Gould, Alexander R Ivanov, Kevin Jooß, Liangliang Sun","doi":"10.1002/mas.70028","DOIUrl":"https://doi.org/10.1002/mas.70028","url":null,"abstract":"<p><p>Top-down proteomics (TDP) characterizes proteoforms in cells, tissues, and biofluids, in discovery mode and on a global scale, requiring analytical tools with high peak capacity for proteoform separation and high sensitivity for proteoform detection, given the extremely high proteoform complexity and wide proteoform concentration dynamic range. Capillary electrophoresis-mass spectrometry (CE-MS) has become an essential tool for TDP in various biomedical applications due to its excellent separation efficiency and high measurement sensitivity for proteoforms, especially with continued improvements in reproducibility and robustness over the last several years. This review summarizes the technological advancements and biomedical applications of CE-MS-based TDP in the last 3 years (2023-2025) and offers brief perspectives at the end.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":" ","pages":""},"PeriodicalIF":6.6,"publicationDate":"2026-05-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147831584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Editorial for the Special Honor Issue Honoring Dr. Carlito B. Lebrilla. 专为纪念卡里托·b·勒布里拉博士而写的社论。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-17 DOI: 10.1002/mas.70027
Benjamin A Garcia
{"title":"Editorial for the Special Honor Issue Honoring Dr. Carlito B. Lebrilla.","authors":"Benjamin A Garcia","doi":"10.1002/mas.70027","DOIUrl":"https://doi.org/10.1002/mas.70027","url":null,"abstract":"","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":" ","pages":""},"PeriodicalIF":6.6,"publicationDate":"2026-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147715399","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Personal Reflection on Dr. Carlito Lebrilla. Carlito Lebrilla博士的个人反思。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-17 DOI: 10.1002/mas.70026
Benjamin A Garcia
{"title":"Personal Reflection on Dr. Carlito Lebrilla.","authors":"Benjamin A Garcia","doi":"10.1002/mas.70026","DOIUrl":"https://doi.org/10.1002/mas.70026","url":null,"abstract":"","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":" ","pages":""},"PeriodicalIF":6.6,"publicationDate":"2026-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147715337","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Perspective of Multi-Reflecting TOF MS 透视多反射 TOF MS。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-08 Epub Date: 2024-11-12 DOI: 10.1002/mas.21915
A. N. Verenchikov, V. V. Makarov, A. V. Vorobyev, S. N. Kirillov
{"title":"A Perspective of Multi-Reflecting TOF MS","authors":"A. N. Verenchikov,&nbsp;V. V. Makarov,&nbsp;A. V. Vorobyev,&nbsp;S. N. Kirillov","doi":"10.1002/mas.21915","DOIUrl":"10.1002/mas.21915","url":null,"abstract":"<p>Time-of-flight mass spectrometry (TOF MS) excels in rapid and high-sensitivity analysis, making it a cornerstone of analytical chemistry. But as sample complexity explodes in omics studies, so does the need for higher resolving power to ensure accurate results. Traditional TOF instruments face a challenge: achieving high resolution often requires a very large instrument. To overcome this limitation, scientists developed alternative designs for TOF analyzers called multi-pass TOF analyzers (MPT). These MPT analyzers come in two main configurations: multi-turn (MTT) and multi-reflecting (MRT). Drawing on the authors’ extensive experience, this review describes two decades of MPT advancements. It highlights the critical development of optimized analyzer designs, tracing the evolution towards mirror-based MRT instruments, generally providing superior resolution and spatial acceptance compared to MTT. While the manuscript attempts to overview MTT advances, it primarily focuses on MRT technology. Additionally, the review explores the role of orthogonal accelerators and trap pulse converters, comparing their efficiency and the dynamic range limits imposed by space charge effects. By comparing various MRT configurations and commercially available instruments, the review sets out to inform and empower researchers so they can make informed decisions about MRT mass spectrometers.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"45 3","pages":"476-506"},"PeriodicalIF":6.6,"publicationDate":"2026-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13062609/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142613259","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cold EI—The Way to Improve GC-MS and Increase Its Range of Applications 改进气相色谱-质谱法并扩大其应用范围的途径。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-08 Epub Date: 2025-03-05 DOI: 10.1002/mas.21928
Aviv Amirav, Benny Neumark, Oneg Elkabets, Alex Yakovchuk
{"title":"Cold EI—The Way to Improve GC-MS and Increase Its Range of Applications","authors":"Aviv Amirav,&nbsp;Benny Neumark,&nbsp;Oneg Elkabets,&nbsp;Alex Yakovchuk","doi":"10.1002/mas.21928","DOIUrl":"10.1002/mas.21928","url":null,"abstract":"<p>Gas chromatography-mass spectrometry (GC-MS) with Cold electron ionization (EI) is based on interfacing the GC and MS with a supersonic molecular beam (SMB) along with electron ionization of vibrationally cold sample compounds in the SMB in a contact-free fly-through ion source (hence the name Cold EI). Cold EI improves all the central performance aspects of GC-MS, including: a significantly extended range of compounds that are amenable for analysis, enhanced molecular ions, highly improved sample identification, faster analysis (much faster), uniform response to all analytes, greater selectivity and higher signal to noise ratios and lower limits of detection, particularly for compounds that are difficult to analyze. GC-MS with Cold EI executes the analysis of the full range of standard EI applications and most with major improvements of various metrics. Furthermore, it significantly extends the range of compounds and applications amenable for GC-MS analysis. Accordingly, it is a highly superior replacement ion source. In this review article, we describe Cold EI and its main features, discuss its benefits, and demonstrate several of its unique applications including cannabinoids analysis, synthetic organic compounds analysis, whole blood analysis for medical diagnostics, isomer distribution analysis for improved fuels and oils, and explosives analysis.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"45 3","pages":"548-582"},"PeriodicalIF":6.6,"publicationDate":"2026-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13062617/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143565717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Deep Learning Methods for De Novo Peptide Sequencing 全新肽段测序的深度学习方法。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-08 Epub Date: 2024-11-29 DOI: 10.1002/mas.21919
Wout Bittremieux, Varun Ananth, William E. Fondrie, Carlo Melendez, Marina Pominova, Justin Sanders, Bo Wen, Melih Yilmaz, William S. Noble
{"title":"Deep Learning Methods for De Novo Peptide Sequencing","authors":"Wout Bittremieux,&nbsp;Varun Ananth,&nbsp;William E. Fondrie,&nbsp;Carlo Melendez,&nbsp;Marina Pominova,&nbsp;Justin Sanders,&nbsp;Bo Wen,&nbsp;Melih Yilmaz,&nbsp;William S. Noble","doi":"10.1002/mas.21919","DOIUrl":"10.1002/mas.21919","url":null,"abstract":"<div>\u0000 \u0000 <p>Protein tandem mass spectrometry data are most often interpreted by matching observed mass spectra to a protein database derived from the reference genome of the sample being analyzed. In many application domains, however, a relevant protein database is unavailable or incomplete, and in such settings <i>de novo</i> sequencing is required. Since the introduction of the DeepNovo algorithm in 2017, the field of <i>de novo</i> sequencing has been dominated by deep learning methods, which use large amounts of labeled mass spectrometry data to train multi-layer neural networks to translate from observed mass spectra to corresponding peptide sequences. Here, we describe these deep learning methods, outline procedures for evaluating their performance, and discuss the challenges in the field, both in terms of methods development and evaluation protocols.</p>\u0000 </div>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"45 3","pages":"507-526"},"PeriodicalIF":6.6,"publicationDate":"2026-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142749501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Protein glycosylation in lung cancer from a mass spectrometry perspective 从质谱分析角度看肺癌中的蛋白质糖基化
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-08 Epub Date: 2024-04-04 DOI: 10.1002/mas.21882
Mirjam Balbisi, Simon Sugár, Lilla Turiák
{"title":"Protein glycosylation in lung cancer from a mass spectrometry perspective","authors":"Mirjam Balbisi,&nbsp;Simon Sugár,&nbsp;Lilla Turiák","doi":"10.1002/mas.21882","DOIUrl":"10.1002/mas.21882","url":null,"abstract":"<p>Lung cancer is a severe disease for which better diagnostic and therapeutic approaches are urgently needed. Increasing evidence implies that aberrant protein glycosylation plays a crucial role in the pathogenesis and progression of lung cancer. Differences in glycosylation patterns have been previously observed between healthy and cancerous samples as well as between different lung cancer subtypes, which suggests untapped diagnostic potential. In addition, understanding the changes mediated by glycosylation may shed light on possible novel therapeutic targets and personalized treatment strategies for lung cancer patients. Mass spectrometry based glycomics and glycoproteomics have emerged as powerful tools for in-depth characterization of changes in protein glycosylation, providing valuable insights into the molecular basis of lung cancer. This paper reviews the literature on the analysis of protein glycosylation in lung cancer using mass spectrometry, which is dominated by manuscripts published over the past 5 years. Studies analyzing <i>N</i>-glycosylation, <i>O</i>-glycosylation, and glycosaminoglycan patterns in tissue, serum, plasma, and rare biological samples of lung cancer patients are highlighted. The current knowledge on the potential utility of glycan and glycoprotein biomarkers is also discussed.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"45 3","pages":"455-475"},"PeriodicalIF":6.6,"publicationDate":"2026-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://analyticalsciencejournals.onlinelibrary.wiley.com/doi/epdf/10.1002/mas.21882","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140584383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Progress in Tandem Mass Spectrometry Data Analysis for Nucleic Acids 核酸串联质谱数据分析研究进展。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-08 Epub Date: 2025-01-10 DOI: 10.1002/mas.21923
Michael B. Lanzillotti, Jennifer S. Brodbelt
{"title":"Progress in Tandem Mass Spectrometry Data Analysis for Nucleic Acids","authors":"Michael B. Lanzillotti,&nbsp;Jennifer S. Brodbelt","doi":"10.1002/mas.21923","DOIUrl":"10.1002/mas.21923","url":null,"abstract":"<div>\u0000 \u0000 <p>Mass spectrometry (MS) has become a critical tool in the characterization of covalently modified nucleic acids. Well-developed bottom-up approaches, where nucleic acids are digested with an endonuclease and the resulting oligonucleotides are separated before MS and MS/MS analysis, provide substantial insight into modified nucleotides in biological and synthetic nucleic. Top-down MS presents an alternative approach where the entire nucleic acid molecule is introduced to the mass spectrometer intact and then fragmented by MS/MS. Current top-down MS workflows have incorporated automated, on-line HPLC workflows to enable rapid desalting of nucleic acid samples for facile mass analysis without complication from adduction. Furthermore, optimization of MS/MS parameters utilizing collision, electron, or photon-based activation methods have enabled effective bond cleavage throughout the phosphodiester backbone while limiting secondary fragmentation, allowing characterization of progressively larger (~100 nt) nucleic acids and localization of covalent modifications. Development of software applications to perform automated identification of fragment ions has accelerated the broader adoption of mass spectrometry for analysis of nucleic acids. This review focuses on progress in tandem mass spectrometry for characterization of nucleic acids with particular emphasis on the software tools that have proven critical for advancing the field.</p>\u0000 </div>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":"45 3","pages":"527-547"},"PeriodicalIF":6.6,"publicationDate":"2026-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142963234","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
First 20 Years of Orbitrap Mass Spectrometry as the Mainstream Analytical Technique. 轨道阱质谱法作为主流分析技术的前20年。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-04-08 DOI: 10.1002/mas.70024
Alexander Makarov
{"title":"First 20 Years of Orbitrap Mass Spectrometry as the Mainstream Analytical Technique.","authors":"Alexander Makarov","doi":"10.1002/mas.70024","DOIUrl":"https://doi.org/10.1002/mas.70024","url":null,"abstract":"<p><p>This review traces the first 20 years of Orbitrap mass spectrometry as a mainstream high‑resolution and accurate‑mass (HR/AM) technology. It outlines the historical development of the Orbitrap analyzer, the evolution of major instrument families, and the key technological innovations that enabled its widespread adoption. Particular emphasis is placed on hybrid and Tribrid architectures, democratization of HR/AM through benchtop platforms, extension to high‑mass and native analysis, and integration with ion mobility, advanced fragmentation methods, and emerging applications such as structural biology, isotope ratio measurements, and space research. The review concludes with a perspective on future directions and the anticipated role of Orbitrap instrumentation as the core workhorse in analytical laboratories worldwide.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":" ","pages":""},"PeriodicalIF":6.6,"publicationDate":"2026-04-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147632058","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ion Activation Methods for Top-Down Proteomics. 自顶向下蛋白质组学的离子激活方法。
IF 6.6 2区 化学
Mass Spectrometry Reviews Pub Date : 2026-03-31 DOI: 10.1002/mas.70023
Jada N Walker, Jennifer S Brodbelt
{"title":"Ion Activation Methods for Top-Down Proteomics.","authors":"Jada N Walker, Jennifer S Brodbelt","doi":"10.1002/mas.70023","DOIUrl":"https://doi.org/10.1002/mas.70023","url":null,"abstract":"<p><p>Mass spectrometry (MS) has emerged as a premier method used to characterize the sequences of proteins. Top-down proteomics aims to capture the multiple sources of structural diversity reflected in proteins, such as those that arise from alternative RNA splicing events or the addition of post-translational modifications. Tandem MS (i.e., MS/MS) represents a critical component of a top-down proteomics experiment, as the resulting fragmentation patterns unveil various structural features associated with protein function. This review spotlights recent developments and applications of ion activation methods used to decipher the structural properties of intact proteins, including collisional activation and those based on the use of electrons and photons. The analysis of fragment ions generated by these MS/MS methods are also discussed, along with an outlook on future developments in the field related to instrumentation and burgeoning approaches to top-down proteomics, such as single-cell methods.</p>","PeriodicalId":206,"journal":{"name":"Mass Spectrometry Reviews","volume":" ","pages":""},"PeriodicalIF":6.6,"publicationDate":"2026-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147589016","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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