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Laser-driven electron source suitable for single-shot Gy-scale irradiation of biological cells at dose rates exceeding 1010 Gy/s 激光驱动电子源,适用于以超过 1010 Gy/s 的剂量率对生物细胞进行单次 Gy 级辐照
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-12 DOI: 10.1103/physreve.110.035204
C. A. McAnespie, P. Chaudhary, L. Calvin, M. J. V. Streeter, G. Nersysian, S. J. McMahon, K. M. Prise, G. Sarri
{"title":"Laser-driven electron source suitable for single-shot Gy-scale irradiation of biological cells at dose rates exceeding 1010 Gy/s","authors":"C. A. McAnespie, P. Chaudhary, L. Calvin, M. J. V. Streeter, G. Nersysian, S. J. McMahon, K. M. Prise, G. Sarri","doi":"10.1103/physreve.110.035204","DOIUrl":"https://doi.org/10.1103/physreve.110.035204","url":null,"abstract":"We report on the first systematic characterization of a tuneable laser-driven electron source capable of delivering Gy-scale doses in a duration of 10–20 ps in a single irradiation, thus reaching unprecedented dose rates in the range of <math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mrow><msup><mn>10</mn><mn>10</mn></msup><mtext>–</mtext><msup><mn>10</mn><mn>12</mn></msup></mrow></math> Gy/s. Detailed characterization of the source indicates, in agreement with Monte Carlo simulations, dose delivery over cm-scale areas with a high degree of spatial uniformity. The results reported here confirm that a laser-driven source of this kind can be used for systematic studies of the response of biological cells to picosecond-scale radiation at ultrahigh dose rates.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Neural density functionals: Local learning and pair-correlation matching 神经密度函数:局部学习和配对相关匹配
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-12 DOI: 10.1103/physreve.110.l032601
Florian Sammüller, Matthias Schmidt
{"title":"Neural density functionals: Local learning and pair-correlation matching","authors":"Florian Sammüller, Matthias Schmidt","doi":"10.1103/physreve.110.l032601","DOIUrl":"https://doi.org/10.1103/physreve.110.l032601","url":null,"abstract":"Recently, Dijkman <i>et al.</i> [arXiv:2403.15007] proposed training classical neural density functionals via bulk pair-correlation matching. We show their method to be an efficient regularizer for neural functionals based on local learning of inhomogeneous one-body direct correlations [Sammüller <i>et al.</i>, <span>Proc. Natl. Acad. Sci. USA</span> <b>120</b>, e2312484120 (2023)]. While Dijkman <i>et al.</i> demonstrated pair-correlation matching of a global neural free-energy functional, we argue in favor of local one-body learning for flexible neural modeling of the full Mermin-Evans density-functional map. Using spatial localization gives access to accurate neural free-energy functionals, including convolutional neural networks, that transcend the training box.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201009","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Electrothermal filamentation of igniting plasmas 点燃等离子体的电热丝化
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-12 DOI: 10.1103/physreve.110.035205
H. Martin, R. W. Paddock, M. W. von der Leyen, V. Eliseev, R. T. Ruskov, R. Timmis, J. J. Lee, A. James, P. A. Norreys
{"title":"Electrothermal filamentation of igniting plasmas","authors":"H. Martin, R. W. Paddock, M. W. von der Leyen, V. Eliseev, R. T. Ruskov, R. Timmis, J. J. Lee, A. James, P. A. Norreys","doi":"10.1103/physreve.110.035205","DOIUrl":"https://doi.org/10.1103/physreve.110.035205","url":null,"abstract":"Dense, hot plasmas are susceptible to the electrothermal instability: a collisional process which permits temperature perturbations in electron currents to grow. It is shown here that linearizing a system comprised of two opposing currents and a mobile ion background as three distinct fluids yields unstable modes with rapid growth rates (<math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mrow><mo>∼</mo><msup><mn>10</mn><mn>13</mn></msup><mspace width=\"4pt\"></mspace><msup><mi mathvariant=\"normal\">s</mi><mrow><mo>−</mo><mn>1</mn></mrow></msup></mrow></math>) for wavenumbers below a threshold <math xmlns=\"http://www.w3.org/1998/Math/MathML\"><msub><mi>k</mi><mi>th</mi></msub></math>. An analytical threshold condition is derived, this being surpassed for typical hot-spot and shell parameters. Particle-in-cell simulations successfully benchmark the predicted growth rates and threshold behavior. Electrothermal filamentation within the shell will impact the burn wave propagation into the cold fuel and resulting burn dynamics.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201008","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Topological phases in population dynamics with rock-paper-scissors interactions 具有剪刀石头布相互作用的种群动力学拓扑阶段
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-12 DOI: 10.1103/physreve.110.034208
Jinfeng Liang, Qionglin Dai, Hancheng Li, Haihong Li, Junzhong Yang
{"title":"Topological phases in population dynamics with rock-paper-scissors interactions","authors":"Jinfeng Liang, Qionglin Dai, Hancheng Li, Haihong Li, Junzhong Yang","doi":"10.1103/physreve.110.034208","DOIUrl":"https://doi.org/10.1103/physreve.110.034208","url":null,"abstract":"Topological phases have arisen great interests of physicists. Though most works focus on quantum systems, topological phases can also be found in nonquantum systems. In this work, we study an antisymmetric Lotka-Volterra dynamics defined on a chain of two-site cells with open boundary conditions. We find two edge-localization states, left edge-localization state, and right edge-localization state. In an edge-localization state, there exists a boundary region in which mass distribution displays an exponential decay with the distance away from the boundary. The two edge-localization states are connected by a sharp transition. To comprehend the edge-localization states, we transform the population dynamics into a non-Hermitian quantum system. Based on the generalized topological band theory of the non-Hermitian system with periodic boundary conditions, we use winding number to distinguish the left and the right edge-localization states, and the transition between these two states is identified to be a topological one.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142200997","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Renormalization of networks with weak geometric coupling 弱几何耦合网络的重正化
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-11 DOI: 10.1103/physreve.110.l032302
Jasper van der Kolk, Marián Boguñá, M. Ángeles Serrano
{"title":"Renormalization of networks with weak geometric coupling","authors":"Jasper van der Kolk, Marián Boguñá, M. Ángeles Serrano","doi":"10.1103/physreve.110.l032302","DOIUrl":"https://doi.org/10.1103/physreve.110.l032302","url":null,"abstract":"The renormalization group is crucial for understanding systems across scales, including complex networks. Renormalizing networks via network geometry, a framework in which their topology is based on the location of nodes in a hidden metric space, is one of the foundational approaches. However, the current methods assume that the geometric coupling is strong, neglecting weak coupling in many real networks. This paper extends renormalization to weak geometric coupling, showing that geometric information is essential to preserve self-similarity. Our results underline the importance of geometric effects on network topology even when the coupling to the underlying space is weak.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unified theory for the scaling of the crossover between strong and weak disorder behaviors of optimal paths and directed or undirected polymers in disordered media 无序介质中最优路径和有向或无向聚合物的强弱无序行为交叉缩放的统一理论
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-11 DOI: 10.1103/physreve.110.034502
Daniel Villarrubia-Moreno, Pedro Córdoba-Torres
{"title":"Unified theory for the scaling of the crossover between strong and weak disorder behaviors of optimal paths and directed or undirected polymers in disordered media","authors":"Daniel Villarrubia-Moreno, Pedro Córdoba-Torres","doi":"10.1103/physreve.110.034502","DOIUrl":"https://doi.org/10.1103/physreve.110.034502","url":null,"abstract":"In this paper, we are concerned with the crossover between strong disorder (SD) and weak disorder (WD) behaviors in three well-known problems that involve minimal paths: directed polymers (directed paths with fixed starting point and length), optimal paths (undirected paths with a fixed end-to-end or spanning distance), and undirected polymers (undirected paths with a fixed starting point and length). We present a unified theoretical framework from which we can easily deduce the scaling of the crossover point of each problem in an arbitrary dimension. Our theory is based on the fact that the SD limit behavior of these systems is closely related to the corresponding percolation problem. As a result, the properties of those minimal paths are completely controlled by the so-called red bonds of percolation theory. Our model is first addressed numerically and then approximated by a two-term approach. This approach provides us with an analytical expression that seems to be reasonably accurate. The results are in perfect agreement with our simulations and with most of the results reported in related works. Our research also leads us to propose this crossover point as a universal measure of the disorder strength in each case. Interestingly, that measure depends on both the statistical properties of the disorder and the topological properties of the network.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quantum dynamics of wave packets in a Morse potential: A dynamical system approach 莫尔斯势中波包的量子动力学:动力系统方法
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-11 DOI: 10.1103/physreve.110.034207
Prasun Sarkar, Rohitashwa Chattopadhyay, Jayanta K. Bhattacharjee
{"title":"Quantum dynamics of wave packets in a Morse potential: A dynamical system approach","authors":"Prasun Sarkar, Rohitashwa Chattopadhyay, Jayanta K. Bhattacharjee","doi":"10.1103/physreve.110.034207","DOIUrl":"https://doi.org/10.1103/physreve.110.034207","url":null,"abstract":"We show how a dynamical systems approach can, somewhat unexpectedly, be relevant in the quantum dynamics featuring oscillations and escape in the Morse potential. We compare the dynamics resulting from the approach with the results obtained from a direct numerical integration of the relevant Schrödinger equation to support our claim. An interesting finding of the numerical investigation is the marked increase in the probability of obtaining a significant fraction (more than <math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mrow><mn>50</mn><mo>%</mo></mrow></math>) of the wave packet in the classically forbidden range beyond a critical energy of the packet. The fact that the dynamical systems approach shows an instability near that critical energy is a definite indication of the relevance of dynamical systems to the quantum dynamics. At lower energies, the calculated mean position <math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mrow><mo>〈</mo><mi>x</mi><mo>〉</mo></mrow></math> and variance <math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mi>V</mi></math> from the dynamical system allow us to clearly establish the phenomenon of tunneling since the sum <math xmlns=\"http://www.w3.org/1998/Math/MathML\"><mrow><mrow><mo>〈</mo><mi>x</mi><mo>〉</mo></mrow><mo>+</mo><msqrt><mi>V</mi></msqrt></mrow></math> clearly exceeds, at various times, the classical bound on displacement for the corresponding energy.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201013","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Extreme fractal dimension at periodicity cascades in parameter spaces 参数空间周期级联的极限分形维度
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-11 DOI: 10.1103/physreve.110.l032201
Carlos E. P. Abreu, Joelson D. V. Hermes, Diogo Ricardo da Costa, Everton S. Medeiros, Rene O. Medrano-T
{"title":"Extreme fractal dimension at periodicity cascades in parameter spaces","authors":"Carlos E. P. Abreu, Joelson D. V. Hermes, Diogo Ricardo da Costa, Everton S. Medeiros, Rene O. Medrano-T","doi":"10.1103/physreve.110.l032201","DOIUrl":"https://doi.org/10.1103/physreve.110.l032201","url":null,"abstract":"In the parameter spaces of nonlinear dynamical systems, we investigate the boundaries between periodicity and chaos and unveil the existence of fractal sets characterized by a singular fractal dimension that deviates greatly from the fractal sets in their vicinity. This extreme fractal dimension stands out from the typical value previously considered universal for these parameter boundaries. We show that such singular fractal sets dwell along parameter curves, called extreme curves, that intersect periodicity cascades at their centers of stability across all scales of parameter spaces. The results reported here are generally demonstrated for the class of one-dimensional maps with at least two control parameters. Generalizations to other classes of systems are possible.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201011","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inhomogeneity effects on earthquake fault events 非均质性对地震断层事件的影响
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-10 DOI: 10.1103/physreve.110.034206
S. Tahir, M. Loulidi, A. Rachadi
{"title":"Inhomogeneity effects on earthquake fault events","authors":"S. Tahir, M. Loulidi, A. Rachadi","doi":"10.1103/physreve.110.034206","DOIUrl":"https://doi.org/10.1103/physreve.110.034206","url":null,"abstract":"We present a detailed analysis of the dynamical behavior of an inhomogeneous Burridge-Knopoff model, a simplified mechanical model of an earthquake. Regardless of the size of seismic faults, a soil element rarely has a continuous appearance. Instead, their surfaces have complex structures. Thus, the model we suggest keeps the full Newtonian dynamics with inertial effects of the original model, while incorporating the inhomogeneities of seismic fault surfaces in stick-slip friction force that depends on the local structure of the contact surfaces as shown in recent experiments. The numerical results of the proposed model show that the cluster size and the moment distributions of earthquake events are in agreement with the Gutenberg-Richter law without introducing any relaxation mechanism. The exponent of the power-law size distribution we obtain falls within a realistic range of value without fine tuning any parameter. On the other hand, we show that the size distribution of both localized and delocalized events obeys a power law in contrast to the homogeneous case. Thus, no crossover behavior between small and large events occurs.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterizing the nonmonotonic behavior of mutual information along biochemical reaction cascades 表征生化反应级联中互信息的非单调行为
IF 2.4 3区 物理与天体物理
Physical review. E Pub Date : 2024-09-10 DOI: 10.1103/physreve.110.034309
Raymond Fan, Andreas Hilfinger
{"title":"Characterizing the nonmonotonic behavior of mutual information along biochemical reaction cascades","authors":"Raymond Fan, Andreas Hilfinger","doi":"10.1103/physreve.110.034309","DOIUrl":"https://doi.org/10.1103/physreve.110.034309","url":null,"abstract":"Cells sense environmental signals and transmit information intracellularly through changes in the abundance of molecular components. Such molecular abundances can be measured in single cells and exhibit significant heterogeneity in clonal populations even in identical environments. Experimentally observed joint probability distributions can then be used to quantify the covariability and mutual information between molecular abundances along signaling cascades. However, because stationary state abundances along stochastic biochemical reaction cascades are not conditionally independent, their mutual information is not constrained by the data-processing inequality. Here, we report the conditions under which the mutual information between stationary state abundances increases along a cascade of biochemical reactions. This nonmonotonic behavior can be intuitively understood in terms of noise propagation and time-averaging stochastic fluctuations that are short-lived compared to an extrinsic signal. Our results reemphasize that mutual information measurements of stationary state distributions of cellular components may be of limited utility for characterizing cellular signaling processes because they do not measure information transfer.","PeriodicalId":20085,"journal":{"name":"Physical review. E","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2024-09-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142201017","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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