{"title":"A new direction for neural networks","authors":"William P. Olson","doi":"10.1038/s41593-026-02439-1","DOIUrl":"10.1038/s41593-026-02439-1","url":null,"abstract":"","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":"29 9","pages":"2056-2056"},"PeriodicalIF":20.3,"publicationDate":"2026-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148872196","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Qi Qiu, Hongjie Zhang, Zijie Xia, William Gao, Julia I Leu, Dongming Liang, Ying Li, Fan Li, Yijing Su, Emily Feierman, Erin Van Horn, Guo-Li Ming, Erica Korb, Hongjun Song, Zhaolan Zhou, Hao Wu
{"title":"Spatial mapping of RNA turnover kinetics in the mouse brain.","authors":"Qi Qiu, Hongjie Zhang, Zijie Xia, William Gao, Julia I Leu, Dongming Liang, Ying Li, Fan Li, Yijing Su, Emily Feierman, Erin Van Horn, Guo-Li Ming, Erica Korb, Hongjun Song, Zhaolan Zhou, Hao Wu","doi":"10.1038/s41593-026-02420-y","DOIUrl":"10.1038/s41593-026-02420-y","url":null,"abstract":"<p><p>Gene regulation requires coordinated control of RNA synthesis and degradation, yet measuring RNA turnover across intact tissues remains challenging. Here we present spatial NT-seq, a method that combines transgenesis-free metabolic RNA labeling with in situ chemical recoding on spatial transcriptomics platforms to co-map newly synthesized and pre-existing RNAs. Applying spatial NT-seq to the mouse brain reveals pronounced regional heterogeneity in RNA turnover and identifies the dentate gyrus as a spatial hotspot marked by coordinated upregulation of basal RNA synthesis and decay. Moreover, spatial NT-seq uncovers rapid, brain region-specific transcriptional and post-transcriptional responses to electroconvulsive stimulation, a clinically relevant treatment for refractory depression. Finally, we leverage computational modeling to identify sequence features and post-transcriptional regulators that shape transcriptome-wide mRNA stability across spatial and cellular contexts in the mouse brain. Together, this integrated 'in vivo timescope' framework provides a spatially resolved view of RNA turnover kinetics and reveals the regulatory architecture of RNA stability in vivo.</p>","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":" ","pages":""},"PeriodicalIF":20.3,"publicationDate":"2026-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148866129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Reesha R Patel, Kelly N Kim, Makenzie Patarino, Rachelle Pamintuan, Felix H Taschbach, Hao Li, Bitna Joo, Anna Pallé, Xianru Yu, Christopher R Lee, Aniek van Hoek, Jesse White, Rogelio Castro, Christian Cazares, Raymundo L Miranda, Caroline Jia, Jeremy Delahanty, Kanha Batra, Laurel R Keyes, Avraham Libster, Romy Wichmann, Talmo D Pereira, Marcus K Benna, Kay M Tye
{"title":"Social isolation recruits amygdala-medial prefrontal cortex projections to escalate alcohol drinking in male mice.","authors":"Reesha R Patel, Kelly N Kim, Makenzie Patarino, Rachelle Pamintuan, Felix H Taschbach, Hao Li, Bitna Joo, Anna Pallé, Xianru Yu, Christopher R Lee, Aniek van Hoek, Jesse White, Rogelio Castro, Christian Cazares, Raymundo L Miranda, Caroline Jia, Jeremy Delahanty, Kanha Batra, Laurel R Keyes, Avraham Libster, Romy Wichmann, Talmo D Pereira, Marcus K Benna, Kay M Tye","doi":"10.1038/s41593-026-02413-x","DOIUrl":"10.1038/s41593-026-02413-x","url":null,"abstract":"<p><p>Social isolation profoundly alters motivation and increases vulnerability to alcohol misuse in humans, yet the underlying neural mechanisms remain unclear. Here we show that isolation escalates alcohol drinking in male mice but suppresses it in females. Whole-cell recordings revealed that neurons in the basolateral amygdala projecting to the medial prefrontal cortex (BLA-mPFC) track alcohol intake in both sexes. Isolation increased BLA-mPFC excitability in males but decreased it in females, mirroring their opposite behavioral adaptations. Given this divergence, we focused subsequent mechanistic studies on males to isolate neural pathway-level drivers of escalated alcohol intake. Cellular-resolution calcium imaging showed that activity in BLA-mPFC neurons encodes and predicts alcohol drinking, and optogenetic activation of this pathway increased alcohol intake. Simultaneous optogenetics and calcium imaging revealed that BLA-mPFC stimulation enhanced mPFC neuronal responses to alcohol, mimicking isolation-induced activity patterns, while photoinhibition reduced drinking in isolated mice. Together, these findings identify a BLA-mPFC pathway mechanism through which social isolation reconfigures prefrontal processing to promote alcohol intake.</p>","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":" ","pages":""},"PeriodicalIF":20.3,"publicationDate":"2026-08-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148819145","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xiu-Wen Sui, Jun-Jie Yi, Yao Zhou, Ye-Li Wang, Xin Zhang, Yuhai Tu, Li-Hui Cao, Dong-Gen Luo
{"title":"Motor neurons organize Drosophila feeding sequences via a disinhibitory cascade.","authors":"Xiu-Wen Sui, Jun-Jie Yi, Yao Zhou, Ye-Li Wang, Xin Zhang, Yuhai Tu, Li-Hui Cao, Dong-Gen Luo","doi":"10.1038/s41593-026-02412-y","DOIUrl":"https://doi.org/10.1038/s41593-026-02412-y","url":null,"abstract":"<p><p>Classical models view motor neurons as the final relays of commands driving behaviors such as breathing and feeding. Here, in simultaneous quadruple-electrode recordings from Drosophila performing feeding behavior, we demonstrate that the relevant motor neurons directly coordinate sequential muscle activity through a propagating feedforward disinhibition cascade. Food stimuli trigger rhythmic firing in a leading motor neuron, causing it to release glutamate and thereby simultaneously excite its target muscle and disinhibit a premotor neuron. This disinhibition recruits the next motor neuron in the sequence, triggering a wave that propagates with millisecond precision down the motor chain. By incorporating behavior analysis and computational modeling, we further show that this patterned circuit activity is independent of the pumping rate, enabling this circuit to support robust behavior in the face of changing action contexts. Our work expands the known roles of motor neurons to include the active patterning of precisely ordered motor output.</p>","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":" ","pages":""},"PeriodicalIF":20.3,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148813579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Henry Kim, Edward S Wickstead, Xiaoting Zhou, Insup Choi, Zhenyu Yue
{"title":"Roles of autophagy in brain homeostasis and disease.","authors":"Henry Kim, Edward S Wickstead, Xiaoting Zhou, Insup Choi, Zhenyu Yue","doi":"10.1038/s41593-026-02426-6","DOIUrl":"https://doi.org/10.1038/s41593-026-02426-6","url":null,"abstract":"<p><p>Macroautophagy (autophagy) is a lysosome-dependent degradative pathway that encapsulates proteins and organelles within double-membraned vesicles and recycles the contents back into the cell. The interplay of autophagy with various membrane trafficking pathways is crucial for maintaining cellular homeostasis both under basal conditions and in response to environmental stress. In the CNS, neurons and glial cells rely on a spectrum of quality-control and recycling pathways, notably autophagy, to sustain the intricate functions of the brain. Genetic variants in autophagy genes are known to cause Mendelian disorders primarily affecting the human nervous system, underscoring the critical role of autophagy in brain function. We review the latest research delineating the landscape and network of autophagy in developing and mature neurons, elucidating how conserved autophagy pathways regulate neuronal homeostasis and functions at different ages. We examine the increasing evidence of dysfunctional autophagy that contributes to neurodevelopmental disorders, neurodegenerative diseases and psychiatric conditions. Recent insights into the dysregulation of autophagy provide valuable avenues for biomarker identification and therapeutic development, particularly targeting autophagy-lysosome pathways for neurological disorders.</p>","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":" ","pages":""},"PeriodicalIF":20.3,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148813626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Maria H H Balch, Anton J Blatnik, Kaitlyn M Kray, Vicki L McGovern, Summer R Baxley, Kristen Kent, Rochelle Rodrigo, Arthur H M Burghes, W David Arnold
{"title":"Lack of sensorimotor toxicity when using the clinical SMN expression cassette in scAAV9.","authors":"Maria H H Balch, Anton J Blatnik, Kaitlyn M Kray, Vicki L McGovern, Summer R Baxley, Kristen Kent, Rochelle Rodrigo, Arthur H M Burghes, W David Arnold","doi":"10.1038/s41593-026-02411-z","DOIUrl":"https://doi.org/10.1038/s41593-026-02411-z","url":null,"abstract":"","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":" ","pages":""},"PeriodicalIF":20.3,"publicationDate":"2026-08-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148813584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
James M. Roe, William J. Jagust, Susan M. Landau, Theresa M. Harrison, Håkon Grydeland, Maksim Slivka, José-Luis Alatorre-Warren, Pablo F. Garrido, Øystein Sørensen, Edvard O. S. Grødem, Tyler J. Ward, Esten H. Leonardsen, Alice Murphy, JiaQie Lee, Tormod Fladby, Atle Bjørnerud, Kristine B. Walhovd, Anders M. Fjell, Didac Vidal-Piñeiro, Yunpeng Wang
{"title":"Cortical thickness changes precede high levels of amyloid by at least 7 years","authors":"James M. Roe, William J. Jagust, Susan M. Landau, Theresa M. Harrison, Håkon Grydeland, Maksim Slivka, José-Luis Alatorre-Warren, Pablo F. Garrido, Øystein Sørensen, Edvard O. S. Grødem, Tyler J. Ward, Esten H. Leonardsen, Alice Murphy, JiaQie Lee, Tormod Fladby, Atle Bjørnerud, Kristine B. Walhovd, Anders M. Fjell, Didac Vidal-Piñeiro, Yunpeng Wang","doi":"10.1038/s41593-026-02363-4","DOIUrl":"10.1038/s41593-026-02363-4","url":null,"abstract":"Alzheimer’s disease is now defined by underlying pathology, with elevated amyloid-beta (Aβ) sufficient for diagnosis in the absence of cognitive symptoms. We combined longitudinal magnetic resonance imaging and Aβ positron emission tomography data from three cognitively healthy cohorts to examine cortical thickness trajectories in individuals who later converted to Aβ-positive status, using magnetic resonance images acquired years before conversion. Individuals who subsequently developed elevated Aβ showed a thicker cortex and reduced cortical thinning, detectable up to 7 years before conversion. Many effects persisted after accounting for quantitative Aβ levels, suggesting some cortical thickness changes may be partly independent of Aβ. Differences in cortical thickness and its change showed moderate spatial correspondence with Aβ deposition patterns, and the timing of thickness changes tracked the progression of Aβ accumulation. These findings indicate that cortical thickness alterations can precede positron emission tomography-detectable amyloid positivity by several years, suggesting high amyloid burden may not represent the earliest imaging marker of Alzheimer’s disease. Longitudinal MRI reveals that the cortex becomes relatively thicker years before amyloid positivity is detected on PET, providing insight into the earliest brain changes and potential consequences of amyloid accumulation in Alzheimer’s disease.","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":"29 9","pages":"2164-2175"},"PeriodicalIF":20.3,"publicationDate":"2026-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.nature.comhttps://www.nature.com/articles/s41593-026-02363-4.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148769320","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
David Dahmen, Stefano Recanatesi, Xiaoxuan Jia, Gabriel K. Ocker, Nilufar Lahiji, Simon Musall, Luke Campagnola, Stephanie Seeman, Tim Jarsky, Moritz Helias, Eric Shea-Brown
{"title":"Strong and localized recurrence controls the dimensionality of neural activity across brain areas","authors":"David Dahmen, Stefano Recanatesi, Xiaoxuan Jia, Gabriel K. Ocker, Nilufar Lahiji, Simon Musall, Luke Campagnola, Stephanie Seeman, Tim Jarsky, Moritz Helias, Eric Shea-Brown","doi":"10.1038/s41593-026-02395-w","DOIUrl":"https://doi.org/10.1038/s41593-026-02395-w","url":null,"abstract":"The brain contains an astronomical number of neurons, but it is their collective activity that underlies brain function. The number of degrees of freedom that this activity explores (its dimensionality) is therefore a fundamental signature of neural dynamics. However, it is not known what controls dimensionality in the biological brain. Through analysis of high-density Neuropixels recordings, here, we argue that areas across the mouse cortex predominantly operate in a sensitive regime that gives recurrent synaptic networks a strong role in regulating dimensionality. This control is expressed across time, as cortical activity transitions among states with different dimensionalities. Moreover, this control is mediated through highly tractable features of synaptic networks (network motifs). Analyzing a massive synaptic physiology dataset, we find that motifs impacting dimensionality are prevalent in both mouse and human brains. Thus, local circuitry scales up systematically to help control the degrees of freedom that brain networks may explore and exploit.","PeriodicalId":19076,"journal":{"name":"Nature neuroscience","volume":"131 1","pages":""},"PeriodicalIF":25.0,"publicationDate":"2026-08-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148769319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}