Nature Plants最新文献_第7页

Haplotype-resolved genome assembly and resequencing provide insights into the origin and breeding of modern rose 单倍型解析基因组组装和重新测序为现代玫瑰的起源和育种提供了启示

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-11 DOI: 10.1038/s41477-024-01820-x

Zhao Zhang, Tuo Yang, Yang Liu, Shan Wu, Honghe Sun, Jie Wu, Yonghong Li, Yi Zheng, Haoran Ren, Yuyong Yang, Shaochuan Shi, Wenyan Wang, Qi Pan, Lijuan Lian, Shaowen Duan, Yingxiong Zhu, Youming Cai, Hougao Zhou, Hao Zhang, Kaixue Tang, Jiaopeng Cui, Dan Gao, Liyang Chen, Yunhe Jiang, Xiaoming Sun, Xiaofeng Zhou, Zhangjun Fei, Nan Ma, Junping Gao

{"title":"Haplotype-resolved genome assembly and resequencing provide insights into the origin and breeding of modern rose","authors":"Zhao Zhang, Tuo Yang, Yang Liu, Shan Wu, Honghe Sun, Jie Wu, Yonghong Li, Yi Zheng, Haoran Ren, Yuyong Yang, Shaochuan Shi, Wenyan Wang, Qi Pan, Lijuan Lian, Shaowen Duan, Yingxiong Zhu, Youming Cai, Hougao Zhou, Hao Zhang, Kaixue Tang, Jiaopeng Cui, Dan Gao, Liyang Chen, Yunhe Jiang, Xiaoming Sun, Xiaofeng Zhou, Zhangjun Fei, Nan Ma, Junping Gao","doi":"10.1038/s41477-024-01820-x","DOIUrl":"10.1038/s41477-024-01820-x","url":null,"abstract":"Modern rose (Rosa hybrida) is a recently formed interspecific hybrid and has become one of the most important and widely cultivated ornamentals. Here we report the haplotype-resolved chromosome-scale genome assembly of the tetraploid R. hybrida ‘Samantha’ (‘JACmantha’) and a genome variation map of 233 Rosa accessions involving various wild species, and old and modern cultivars. Homologous chromosomes of ‘Samantha’ exhibit frequent homoeologous exchanges. Population genomic and genomic composition analyses reveal the contributions of wild Rosa species to modern roses and highlight that R. odorata and its derived cultivars are important contributors to modern roses, much like R. chinensis ‘Old Blush’. Furthermore, selective sweeps during modern rose breeding associated with major agronomic traits, including continuous and recurrent flowering, double flower, flower senescence and disease resistance, are identified. This study provides insights into the genetic basis of modern rose origin and breeding history, and offers unprecedented genomic resources for rose improvement. The haplotype-resolved genome of tetraploid modern rose, along with a variation map of 233 wild and cultivated Rosa accessions, reveals the complex genome composition of modern roses and elucidates the genomic bases of their origin and breeding.","PeriodicalId":18904,"journal":{"name":"Nature Plants","volume":"10 11","pages":"1659-1671"},"PeriodicalIF":15.8,"publicationDate":"2024-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142405485","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Visualizing plant metabolism 植物新陈代谢可视化

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-10 DOI: 10.1038/s41477-024-01833-6

Jun Lyu

引用次数: 0

Translation and cytokinin for robust shapes 通过翻译和细胞分裂素实现稳健造型

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-10 DOI: 10.1038/s41477-024-01837-2

Guillaume Tena

引用次数: 0

Holliday junction resolvase RuvC targets biofilm eDNA and confers plant resistance to vascular pathogens 霍利迪连接解析酶RuvC靶向生物膜eDNA，使植物对维管束病原体产生抗性

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-09 DOI: 10.1038/s41477-024-01817-6

Xinya Du, Pengyue Li, Changqiu Fan, Jingjing Tian, Yang Lin, Jiatao Xie, Jiasen Cheng, Yanping Fu, Daohong Jiang, Meng Yuan, Xiao Yu, Kenichi Tsuda, Bo Li

{"title":"Holliday junction resolvase RuvC targets biofilm eDNA and confers plant resistance to vascular pathogens","authors":"Xinya Du, Pengyue Li, Changqiu Fan, Jingjing Tian, Yang Lin, Jiatao Xie, Jiasen Cheng, Yanping Fu, Daohong Jiang, Meng Yuan, Xiao Yu, Kenichi Tsuda, Bo Li","doi":"10.1038/s41477-024-01817-6","DOIUrl":"10.1038/s41477-024-01817-6","url":null,"abstract":"A biofilm lifestyle is critical for bacterial pathogens to colonize and protect themselves from host immunity and antimicrobial chemicals in plants and animals. The formation and regulation mechanisms of phytobacterial biofilm are still obscure. Here we found that the protein Ralstonia solanacearum resistance to ultraviolet C (RuvC) is highly abundant in biofilm and positively regulates pathogenicity by controlling systemic movement in tomato xylem. RuvC protein accumulates at the later stage of biofilm development and specifically targets Holliday junction (HJ)-like structures to disrupt the biofilm extracellular DNA (eDNA) lattice, thus facilitating biofilm dispersal. Recombinant RuvC protein can resolve extracellular HJ to prevent bacterial biofilm formation. Heterologous expression of R. solanacearum or Xanthomonas oryzae pv. oryzae RuvC with plant secretion signal in tomato or rice confers resistance to bacterial wilt or bacterial blight disease, respectively. Plant chloroplast-localized HJ resolvase monokaryotic chloroplast 1 (MOC1), which shares structural similarity with bacterial RuvC, shows a strong inhibitory effect on bacterial biofilm formation. Relocalization of SlMOC1 to apoplast in tomato roots leads to increased resistance to bacterial wilt. Our novel finding reveals a critical pathogenesis mechanism of R. solanacearum and provides an efficient biotechnology strategy to improve plant resistance to bacterial vascular disease. The bacterial pathogen Ralstonia solanacearum secretes endonuclease RuvC, which degrades mature biofilm by targeting the lattice formed by cruciform extracellular DNA. This helps bacterial dispersal, pathogen spread in plant xylem and virulence.","PeriodicalId":18904,"journal":{"name":"Nature Plants","volume":"10 11","pages":"1710-1723"},"PeriodicalIF":15.8,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142385432","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Wildfire smoke exposure reduces tree carbon reserves and yield 野火烟雾会降低树木的碳储量和产量

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-09 DOI: 10.1038/s41477-024-01816-7

引用次数: 0

A promiscuous mechanism to phase separate eukaryotic carbon fixation in the green lineage 绿系真核生物碳固定相分离的杂交机制

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-09 DOI: 10.1038/s41477-024-01812-x

James Barrett, Mihris I. S. Naduthodi, Yuwei Mao, Clément Dégut, Sabina Musiał, Aidan Salter, Mark C. Leake, Michael J. Plevin, Alistair J. McCormick, James N. Blaza, Luke C. M. Mackinder

{"title":"A promiscuous mechanism to phase separate eukaryotic carbon fixation in the green lineage","authors":"James Barrett, Mihris I. S. Naduthodi, Yuwei Mao, Clément Dégut, Sabina Musiał, Aidan Salter, Mark C. Leake, Michael J. Plevin, Alistair J. McCormick, James N. Blaza, Luke C. M. Mackinder","doi":"10.1038/s41477-024-01812-x","DOIUrl":"10.1038/s41477-024-01812-x","url":null,"abstract":"CO2 fixation is commonly limited by inefficiency of the CO2-fixing enzyme Rubisco. Eukaryotic algae concentrate and fix CO2 in phase-separated condensates called pyrenoids, which complete up to one-third of global CO2 fixation. Condensation of Rubisco in pyrenoids is dependent on interaction with disordered linker proteins that show little conservation between species. We developed a sequence-independent bioinformatic pipeline to identify linker proteins in green algae. We report the linker from Chlorella and demonstrate that it binds a conserved site on the Rubisco large subunit. We show that the Chlorella linker phase separates Chlamydomonas Rubisco and that despite their separation by ~800 million years of evolution, the Chlorella linker can support the formation of a functional pyrenoid in Chlamydomonas. This cross-species reactivity extends to plants, with the Chlorella linker able to drive condensation of some native plant Rubiscos in vitro and in planta. Our results represent an exciting frontier for pyrenoid engineering in plants, which is modelled to increase crop yields. Barrett et al. identify a key Rubisco phase-separating protein in the CO2-fixing pyrenoid of Chlorella algae. This protein’s broad promiscuity for green lineage Rubiscos may aid in engineering CO2-supercharging pyrenoids in plants to boost yields.","PeriodicalId":18904,"journal":{"name":"Nature Plants","volume":"10 11","pages":"1801-1813"},"PeriodicalIF":15.8,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.nature.com/articles/s41477-024-01812-x.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142385431","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Algal pyrenoid protein can condense plant Rubiscos: a step towards boosting carbon fixation in crops 藻类类焦磷酸蛋白能凝结植物红宝石：向促进作物碳固定迈出的一步

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-09 DOI: 10.1038/s41477-024-01813-w

引用次数: 0

Global impacts of the European Green Deal 欧洲绿色交易的全球影响

IF 15.8 1区生物学

Nature Plants Pub Date : 2024-10-08 DOI: 10.1038/s41477-024-01835-4

Catherine Walker

引用次数: 0

The spliceosome factor and RNA helicase Brr2a moonlights in miRNA production 剪接体因子和 RNA 螺旋酶 Brr2a 在 miRNA 生产中发挥着重要作用

IF 15.8 1区生物学